RNA–Protein interactions for RNA: ENST00000464362.5

HPS4-208, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 4,277 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-208ENST00000464362 PLCB2Q00722 1185 aa11.57□□□□□ -0.56
HPS4-208ENST00000464362 SMC4Q9NTJ3 1288 aa11.57□□□□□ -0.56
HPS4-208ENST00000464362 CENPJQ9HC77 1338 aaPredicted RBP11.57□□□□□ -0.56
HPS4-208ENST00000464362 MSH5O43196 834 aa11.57□□□□□ -0.56
HPS4-208ENST00000464362 KANK1Q14678 1352 aa11.57□□□□□ -0.56
HPS4-208ENST00000464362 CUX1P39880 1505 aa11.57□□□□□ -0.56
HPS4-208ENST00000464362 SPAG9O60271 1321 aaKnown RBP11.56□□□□□ -0.56
HPS4-208ENST00000464362 LMOD2Q6P5Q4 547 aa11.56□□□□□ -0.56
HPS4-208ENST00000464362 TAOK2Q9UL54 1235 aa11.56□□□□□ -0.56
HPS4-208ENST00000464362 CASKIN1Q8WXD9 1431 aa11.55□□□□□ -0.56
HPS4-208ENST00000464362 NESP48681 1621 aa11.55□□□□□ -0.56
HPS4-208ENST00000464362 ERICH3Q5RHP9 1530 aa11.55□□□□□ -0.56
HPS4-208ENST00000464362 NUTM2FA1L443 756 aa11.55□□□□□ -0.56
HPS4-208ENST00000464362 ADAMTS8Q9UP79 889 aa11.55□□□□□ -0.56
HPS4-208ENST00000464362 PTMAP06454 111 aaKnown RBP11.55□□□□□ -0.56
HPS4-208ENST00000464362 A0A0G2JS52 829 aa11.54□□□□□ -0.56
HPS4-208ENST00000464362 RWDD1Q9H446 243 aaPredicted RBP11.54□□□□□ -0.56
HPS4-208ENST00000464362 BIVM-ERCC5R4GMW8 1640 aa11.53□□□□□ -0.56
HPS4-208ENST00000464362 FAM161AQ3B820 660 aa11.52□□□□□ -0.57
HPS4-208ENST00000464362 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.52□□□□□ -0.57
HPS4-208ENST00000464362 MS4A1P11836 297 aa11.52□□□□□ -0.57
HPS4-208ENST00000464362 DNTTIP2Q5QJE6 756 aaKnown RBP11.52□□□□□ -0.57
HPS4-208ENST00000464362 PNISRQ8TF01 805 aaKnown RBP11.52□□□□□ -0.57
HPS4-208ENST00000464362 CENPQQ7L2Z9 268 aaPredicted RBP11.51□□□□□ -0.57
HPS4-208ENST00000464362 TOP2BQ02880 1626 aa11.51□□□□□ -0.57
HPS4-208ENST00000464362 ANKRD50Q9ULJ7 1429 aa11.5□□□□□ -0.57
HPS4-208ENST00000464362 PANK1Q8TE04 598 aa11.5□□□□□ -0.57
HPS4-208ENST00000464362 TIAM1Q13009 1591 aa11.5□□□□□ -0.57
HPS4-208ENST00000464362 CASC1Q6TDU7 716 aa11.49□□□□□ -0.57
HPS4-208ENST00000464362 ARID3AQ99856 593 aa11.49□□□□□ -0.57
HPS4-208ENST00000464362 HFM1A2PYH4 1435 aa11.49□□□□□ -0.57
HPS4-208ENST00000464362 NAIPQ13075 1403 aa11.49□□□□□ -0.57
HPS4-208ENST00000464362 GSE1Q14687 1217 aa11.48□□□□□ -0.57
HPS4-208ENST00000464362 PMFBP1Q8TBY8 1022 aa11.48□□□□□ -0.57
HPS4-208ENST00000464362 PTPRGP23470 1445 aa11.47□□□□□ -0.57
HPS4-208ENST00000464362 WASHC2CQ9Y4E1 1318 aa11.47□□□□□ -0.57
HPS4-208ENST00000464362 NOL8Q76FK4 1167 aaKnown RBP11.47□□□□□ -0.57
HPS4-208ENST00000464362 IPO8O15397 1037 aaKnown RBP11.47□□□□□ -0.57
HPS4-208ENST00000464362 RSPH4AQ5TD94 716 aa11.47□□□□□ -0.57
HPS4-208ENST00000464362 HDGFL2Q7Z4V5 671 aaPredicted RBP11.47□□□□□ -0.57
HPS4-208ENST00000464362 TMEM132EQ6IEE7 984 aa11.46□□□□□ -0.57
HPS4-208ENST00000464362 FYCO1Q9BQS8 1478 aa11.46□□□□□ -0.57
HPS4-208ENST00000464362 OS9Q13438 667 aaPredicted RBP11.46□□□□□ -0.57
HPS4-208ENST00000464362 FOXD4L5Q5VV16 416 aaPredicted RBP11.46□□□□□ -0.57
HPS4-208ENST00000464362 AFAP1Q8N556 730 aa11.46□□□□□ -0.57
HPS4-208ENST00000464362 FOXD4L4Q8WXT5 416 aaPredicted RBP11.46□□□□□ -0.57
HPS4-208ENST00000464362 KIF21AQ7Z4S6 1674 aa11.46□□□□□ -0.58
HPS4-208ENST00000464362 E9PSI1 815 aa11.46□□□□□ -0.58
HPS4-208ENST00000464362 IL27Q8NEV9 243 aa11.46□□□□□ -0.58
HPS4-208ENST00000464362 L1TD1Q5T7N2 865 aaKnown RBP11.45□□□□□ -0.58
HPS4-208ENST00000464362 NFKBIBQ15653 356 aa11.45□□□□□ -0.58
HPS4-208ENST00000464362 SLC4A10Q6U841 1118 aa11.45□□□□□ -0.58
HPS4-208ENST00000464362 PRG4Q92954 1404 aaPredicted RBP11.45□□□□□ -0.58
HPS4-208ENST00000464362 CFAP70Q5T0N1 1121 aa11.45□□□□□ -0.58
HPS4-208ENST00000464362 MINK1Q8N4C8 1332 aaPredicted RBP11.45□□□□□ -0.58
HPS4-208ENST00000464362 BCAR3O75815 825 aa11.44□□□□□ -0.58
HPS4-208ENST00000464362 PNNQ9H307 717 aaKnown RBP11.43□□□□□ -0.58
HPS4-208ENST00000464362 EIF3AQ14152 1382 aaKnown RBP11.43□□□□□ -0.58
HPS4-208ENST00000464362 KCNJ4P48050 445 aa11.43□□□□□ -0.58
HPS4-208ENST00000464362 POLA1P09884 1462 aaPredicted RBP11.43□□□□□ -0.58
HPS4-208ENST00000464362 GOLGA6L3A6NEY3 463 aa11.43□□□□□ -0.58
HPS4-208ENST00000464362 FOXD4L6Q3SYB3 417 aaPredicted RBP11.43□□□□□ -0.58
HPS4-208ENST00000464362 ANKRD45Q5TZF3 282 aa11.43□□□□□ -0.58
HPS4-208ENST00000464362 FOXD4L3Q6VB84 417 aaPredicted RBP11.43□□□□□ -0.58
HPS4-208ENST00000464362 USP35Q9P2H5 1018 aa11.42□□□□□ -0.58
HPS4-208ENST00000464362 LAMC3Q9Y6N6 1575 aa11.42□□□□□ -0.58
HPS4-208ENST00000464362 BRPF3Q9ULD4 1205 aa11.42□□□□□ -0.58
HPS4-208ENST00000464362 CHMP4BQ9H444 224 aaKnown RBP11.42□□□□□ -0.58
HPS4-208ENST00000464362 CGNL1Q0VF96 1302 aa11.42□□□□□ -0.58
HPS4-208ENST00000464362 BRD4O60885 1362 aaPredicted RBP11.42□□□□□ -0.58
HPS4-208ENST00000464362 FRAT2O75474 233 aaPredicted RBP11.41□□□□□ -0.58
HPS4-208ENST00000464362 PPP2R1AP30153 589 aa11.41□□□□□ -0.58
HPS4-208ENST00000464362 GGNBP2Q9H3C7 697 aa11.41□□□□□ -0.58
HPS4-208ENST00000464362 C20orf194Q5TEA3 1177 aa11.41□□□□□ -0.58
HPS4-208ENST00000464362 ZKSCAN2Q63HK3 967 aa11.41□□□□□ -0.58
HPS4-208ENST00000464362 NAP1L2Q9ULW6 460 aaPredicted RBP11.41□□□□□ -0.58
HPS4-208ENST00000464362 ANO8Q9HCE9 1232 aaPredicted RBP11.4□□□□□ -0.58
HPS4-208ENST00000464362 TERF2IPQ9NYB0 399 aa11.4□□□□□ -0.58
HPS4-208ENST00000464362 RTF1Q92541 710 aaKnown RBP11.4□□□□□ -0.58
HPS4-208ENST00000464362 LNPKQ9C0E8 428 aa11.4□□□□□ -0.58
HPS4-208ENST00000464362 CDK13Q14004 1512 aaKnown RBP11.4□□□□□ -0.58
HPS4-208ENST00000464362 GBP4Q96PP9 640 aa11.4□□□□□ -0.59
HPS4-208ENST00000464362 BACH2Q9BYV9 841 aa11.4□□□□□ -0.59
HPS4-208ENST00000464362 MTHFSP49914 203 aa11.39□□□□□ -0.59
HPS4-208ENST00000464362 LTV1Q96GA3 475 aaPredicted RBP11.39□□□□□ -0.59
HPS4-208ENST00000464362 MSNP26038 577 aaKnown RBP11.38□□□□□ -0.59
HPS4-208ENST00000464362 TCP11L2Q8N4U5 519 aa11.38□□□□□ -0.59
HPS4-208ENST00000464362 PCF11O94913 1555 aaKnown RBP11.38□□□□□ -0.59
HPS4-208ENST00000464362 TOPBP1Q92547 1522 aa11.38□□□□□ -0.59
HPS4-208ENST00000464362 FGD1P98174 961 aa11.38□□□□□ -0.59
HPS4-208ENST00000464362 SLC12A5Q9H2X9 1139 aa11.38□□□□□ -0.59
HPS4-208ENST00000464362 HMOX1P09601 288 aa11.38□□□□□ -0.59
HPS4-208ENST00000464362 TRIM6-TRIM34B2RNG4 842 aa11.37□□□□□ -0.59
HPS4-208ENST00000464362 CABP2Q9NPB3 220 aa11.37□□□□□ -0.59
HPS4-208ENST00000464362 RIPK4P57078 832 aa11.37□□□□□ -0.59
HPS4-208ENST00000464362 DZIP1LQ8IYY4 767 aaKnown RBP11.37□□□□□ -0.59
HPS4-208ENST00000464362 PTPRKQ15262 1439 aa11.37□□□□□ -0.59
HPS4-208ENST00000464362 KIAA1107Q9UPP5 1409 aa11.37□□□□□ -0.59
HPS4-208ENST00000464362 MAPKBP1O60336 1514 aa11.36□□□□□ -0.59
HPS4-208ENST00000464362 NECTIN2Q92692 538 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms