RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 A0A0G2JS52 829 aa11.64□□□□□ -0.55
USH2A-203ENST00000463147 EMILIN3Q9NT22 766 aa11.64□□□□□ -0.55
USH2A-203ENST00000463147 NYAP1Q6ZVC0 841 aa11.63□□□□□ -0.55
USH2A-203ENST00000463147 EPAS1Q99814 870 aa11.63□□□□□ -0.55
USH2A-203ENST00000463147 CAMK2BQ13554 666 aa11.57□□□□□ -0.56
USH2A-203ENST00000463147 IRX2Q9BZI1 471 aaPredicted RBP11.57□□□□□ -0.56
USH2A-203ENST00000463147 ITGBL1O95965 494 aaPredicted RBP11.56□□□□□ -0.56
USH2A-203ENST00000463147 PROX2Q3B8N5 592 aa11.56□□□□□ -0.56
USH2A-203ENST00000463147 SOWAHBA6NEL2 793 aa11.55□□□□□ -0.56
USH2A-203ENST00000463147 COL9A1P20849 921 aa11.55□□□□□ -0.56
USH2A-203ENST00000463147 C6orf132Q5T0Z8 1188 aa11.54□□□□□ -0.56
USH2A-203ENST00000463147 ZFRQ96KR1 1074 aaKnown RBP11.53□□□□□ -0.56
USH2A-203ENST00000463147 KIAA1468Q9P260 1216 aa11.53□□□□□ -0.56
USH2A-203ENST00000463147 CADPS2Q86UW7 1296 aa11.52□□□□□ -0.57
USH2A-203ENST00000463147 TRIM6-TRIM34B2RNG4 842 aa11.5□□□□□ -0.57
USH2A-203ENST00000463147 DPYSL4O14531 572 aa11.49□□□□□ -0.57
USH2A-203ENST00000463147 BCAMP50895 628 aa11.49□□□□□ -0.57
USH2A-203ENST00000463147 FAM98CQ17RN3 349 aaKnown RBP11.49□□□□□ -0.57
USH2A-203ENST00000463147 KCNC4Q03721 635 aa11.47□□□□□ -0.57
USH2A-203ENST00000463147 LRCH3Q96II8 777 aa11.45□□□□□ -0.58
USH2A-203ENST00000463147 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.45□□□□□ -0.58
USH2A-203ENST00000463147 TSR3Q9UJK0 312 aaKnown RBP11.45□□□□□ -0.58
USH2A-203ENST00000463147 SPDYE16A6NNV3 312 aaPredicted RBP11.44□□□□□ -0.58
USH2A-203ENST00000463147 PACS2Q86VP3 889 aa11.44□□□□□ -0.58
USH2A-203ENST00000463147 BBXQ8WY36 941 aaPredicted RBP11.43□□□□□ -0.58
USH2A-203ENST00000463147 WBP1LQ9NX94 342 aa11.43□□□□□ -0.58
USH2A-203ENST00000463147 SEPT9Q9UHD8 586 aaPredicted RBP11.43□□□□□ -0.58
USH2A-203ENST00000463147 RBM33Q96EV2 1170 aaKnown RBP11.42□□□□□ -0.58
USH2A-203ENST00000463147 EN1Q05925 392 aaPredicted RBP11.41□□□□□ -0.58
USH2A-203ENST00000463147 DDX12PQ92771 950 aa11.41□□□□□ -0.58
USH2A-203ENST00000463147 PDIA6Q15084 440 aa11.4□□□□□ -0.58
USH2A-203ENST00000463147 CERKQ8TCT0 537 aa11.4□□□□□ -0.58
USH2A-203ENST00000463147 MAP3K7O43318 606 aa11.39□□□□□ -0.59
USH2A-203ENST00000463147 NBR1Q14596 966 aa11.39□□□□□ -0.59
USH2A-203ENST00000463147 HPS5Q9UPZ3 1129 aa11.39□□□□□ -0.59
USH2A-203ENST00000463147 PPP4CP60510 307 aa11.35□□□□□ -0.59
USH2A-203ENST00000463147 LAPTM4AQ15012 233 aa11.35□□□□□ -0.59
USH2A-203ENST00000463147 SPRYD3Q8NCJ5 442 aa11.33□□□□□ -0.6
USH2A-203ENST00000463147 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.33□□□□□ -0.6
USH2A-203ENST00000463147 TSKSQ9UJT2 592 aa11.32□□□□□ -0.6
USH2A-203ENST00000463147 PRSS12P56730 875 aa11.31□□□□□ -0.6
USH2A-203ENST00000463147 E2F4Q16254 413 aa11.31□□□□□ -0.6
USH2A-203ENST00000463147 CDCA7LQ96GN5 454 aa11.31□□□□□ -0.6
USH2A-203ENST00000463147 ARIH1Q9Y4X5 557 aaPredicted RBP11.31□□□□□ -0.6
USH2A-203ENST00000463147 NBPF26B4DH59 902 aa11.3□□□□□ -0.6
USH2A-203ENST00000463147 HDGFP51858 240 aaKnown RBP11.3□□□□□ -0.6
USH2A-203ENST00000463147 TSR1Q2NL82 804 aaKnown RBP11.3□□□□□ -0.6
USH2A-203ENST00000463147 Q6ZNB5 142 aa11.3□□□□□ -0.6
USH2A-203ENST00000463147 NECTIN2Q92692 538 aa11.3□□□□□ -0.6
USH2A-203ENST00000463147 WDR70Q9NW82 654 aa11.3□□□□□ -0.6
USH2A-203ENST00000463147 RBM27Q9P2N5 1060 aaKnown RBP11.27□□□□□ -0.61
USH2A-203ENST00000463147 SAMD7Q7Z3H4 446 aa11.25□□□□□ -0.61
USH2A-203ENST00000463147 TATDN2Q93075 761 aa11.25□□□□□ -0.61
USH2A-203ENST00000463147 IL21Q9HBE4 155 aa11.24□□□□□ -0.61
USH2A-203ENST00000463147 PNMA3Q9UL41 463 aa11.23□□□□□ -0.61
USH2A-203ENST00000463147 GRXCR2A6NFK2 248 aa11.22□□□□□ -0.61
USH2A-203ENST00000463147 TJAP1Q5JTD0 557 aa11.22□□□□□ -0.61
USH2A-203ENST00000463147 SLC4A3P48751 1232 aa11.2□□□□□ -0.62
USH2A-203ENST00000463147 SMAPO00193 183 aa11.19□□□□□ -0.62
USH2A-203ENST00000463147 MTRQ99707 1265 aa11.18□□□□□ -0.62
USH2A-203ENST00000463147 V9GY48 417 aaPredicted RBP11.18□□□□□ -0.62
USH2A-203ENST00000463147 FAM198AQ9UFP1 575 aa11.17□□□□□ -0.62
USH2A-203ENST00000463147 GFRA3O60609 400 aa11.16□□□□□ -0.62
USH2A-203ENST00000463147 NUDT18Q6ZVK8 323 aa11.16□□□□□ -0.62
USH2A-203ENST00000463147 OSBPP22059 807 aa11.15□□□□□ -0.62
USH2A-203ENST00000463147 GGCXP38435 758 aa11.15□□□□□ -0.62
USH2A-203ENST00000463147 SLF2Q8IX21 1173 aa11.15□□□□□ -0.62
USH2A-203ENST00000463147 PRKD2Q9BZL6 878 aa11.15□□□□□ -0.62
USH2A-203ENST00000463147 RNF40O75150 1001 aa11.14□□□□□ -0.63
USH2A-203ENST00000463147 PPP1R18Q6NYC8 613 aa11.13□□□□□ -0.63
USH2A-203ENST00000463147 TRAF7Q6Q0C0 670 aa11.13□□□□□ -0.63
USH2A-203ENST00000463147 PRR14Q9BWN1 585 aa11.13□□□□□ -0.63
USH2A-203ENST00000463147 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.13□□□□□ -0.63
USH2A-203ENST00000463147 NRG2O14511 850 aaPredicted RBP11.12□□□□□ -0.63
USH2A-203ENST00000463147 PRIM1P49642 420 aaKnown RBP11.12□□□□□ -0.63
USH2A-203ENST00000463147 AMER1Q5JTC6 1135 aaPredicted RBP11.11□□□□□ -0.63
USH2A-203ENST00000463147 PAXIP1Q6ZW49 1069 aaPredicted RBP11.1□□□□□ -0.63
USH2A-203ENST00000463147 TTC13Q8NBP0 860 aa11.1□□□□□ -0.63
USH2A-203ENST00000463147 CFAP44Q96MT7 982 aa11.1□□□□□ -0.63
USH2A-203ENST00000463147 CDHR5Q9HBB8 845 aa11.1□□□□□ -0.63
USH2A-203ENST00000463147 APLP1P51693 650 aa11.08□□□□□ -0.64
USH2A-203ENST00000463147 TMUB1Q9BVT8 246 aa11.08□□□□□ -0.64
USH2A-203ENST00000463147 C3orf80F5H4A9 247 aa11.07□□□□□ -0.64
USH2A-203ENST00000463147 SWT1Q5T5J6 900 aaKnown RBP11.06□□□□□ -0.64
USH2A-203ENST00000463147 PADI6Q6TGC4 694 aa11.05□□□□□ -0.64
USH2A-203ENST00000463147 ZNF516Q92618 1163 aa11.05□□□□□ -0.64
USH2A-203ENST00000463147 NPDC1Q9NQX5 325 aaPredicted RBP11.03□□□□□ -0.64
USH2A-203ENST00000463147 EYA1Q99502 592 aa11.01□□□□□ -0.65
USH2A-203ENST00000463147 ZPR1O75312 459 aa11□□□□□ -0.65
USH2A-203ENST00000463147 ARHGEF1Q92888 912 aaKnown RBP11□□□□□ -0.65
USH2A-203ENST00000463147 PDZRN3Q9UPQ7 1066 aa11□□□□□ -0.65
USH2A-203ENST00000463147 COPS2P61201 443 aa10.99□□□□□ -0.65
USH2A-203ENST00000463147 PCDHB3Q9Y5E6 796 aa10.99□□□□□ -0.65
USH2A-203ENST00000463147 NKX2-3Q8TAU0 364 aa10.98□□□□□ -0.65
USH2A-203ENST00000463147 DNAJB2P25686 324 aa10.97□□□□□ -0.65
USH2A-203ENST00000463147 RBM46Q8TBY0 533 aaKnown RBP10.97□□□□□ -0.65
USH2A-203ENST00000463147 LCE2BO14633 110 aa10.95□□□□□ -0.66
USH2A-203ENST00000463147 KMT5BQ4FZB7 885 aa10.94□□□□□ -0.66
USH2A-203ENST00000463147 PTGDRQ13258 359 aa10.92□□□□□ -0.66
USH2A-203ENST00000463147 SLC19A1P41440 591 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms