RNA–Protein interactions for RNA: ENST00000462030.5

HPS3-204, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2

Gene HPS3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-204ENST00000462030 KDM5DQ9BY66 1539 aa24.67■■□□□ 1.54
HPS3-204ENST00000462030 SHANK2Q9UPX8 1470 aa24.66■■□□□ 1.54
HPS3-204ENST00000462030 RCAN3Q9UKA8 241 aa24.65■■□□□ 1.54
HPS3-204ENST00000462030 NPM2Q86SE8 214 aaKnown RBP24.61■■□□□ 1.53
HPS3-204ENST00000462030 ABCC10Q5T3U5 1492 aa24.61■■□□□ 1.53
HPS3-204ENST00000462030 PARD3Q8TEW0 1356 aa24.6■■□□□ 1.53
HPS3-204ENST00000462030 PTPRGP23470 1445 aa24.6■■□□□ 1.53
HPS3-204ENST00000462030 RTL5Q5HYW3 569 aaPredicted RBP24.6■■□□□ 1.53
HPS3-204ENST00000462030 NLRP13Q86W25 1043 aa24.59■■□□□ 1.53
HPS3-204ENST00000462030 TCERG1O14776 1098 aaKnown RBP24.58■■□□□ 1.53
HPS3-204ENST00000462030 TRPM1Q7Z4N2 1603 aa24.57■■□□□ 1.52
HPS3-204ENST00000462030 TSPY4P0CV99 314 aa24.56■■□□□ 1.52
HPS3-204ENST00000462030 TSPY10P0CW01 314 aa24.56■■□□□ 1.52
HPS3-204ENST00000462030 PLEKHD1A6NEE1 506 aa24.56■■□□□ 1.52
HPS3-204ENST00000462030 CDCA7LQ96GN5 454 aa24.56■■□□□ 1.52
HPS3-204ENST00000462030 PDE4AP27815 886 aa24.55■■□□□ 1.52
HPS3-204ENST00000462030 CHMP7Q8WUX9 453 aaPredicted RBP24.55■■□□□ 1.52
HPS3-204ENST00000462030 MAGI1Q96QZ7 1491 aaPredicted RBP24.55■■□□□ 1.52
HPS3-204ENST00000462030 CARMIL2Q6F5E8 1435 aa24.54■■□□□ 1.52
HPS3-204ENST00000462030 HNRNPMP52272 730 aaKnown RBP eCLIP24.54■■□□□ 1.52
HPS3-204ENST00000462030 PDE3BQ13370 1112 aa24.54■■□□□ 1.52
HPS3-204ENST00000462030 ABCA8O94911 1581 aa24.53■■□□□ 1.52
HPS3-204ENST00000462030 PRAG1Q86YV5 1406 aa24.53■■□□□ 1.52
HPS3-204ENST00000462030 FBLN2P98095 1184 aa24.53■■□□□ 1.52
HPS3-204ENST00000462030 ATP10BO94823 1461 aa24.52■■□□□ 1.52
HPS3-204ENST00000462030 PER1O15534 1290 aaPredicted RBP24.52■■□□□ 1.52
HPS3-204ENST00000462030 FAM135AQ9P2D6 1515 aa24.52■■□□□ 1.52
HPS3-204ENST00000462030 SYNJ2O15056 1496 aa24.51■■□□□ 1.51
HPS3-204ENST00000462030 NBPF1Q3BBV0 1214 aa24.51■■□□□ 1.51
HPS3-204ENST00000462030 JPH4Q96JJ6 628 aa24.51■■□□□ 1.51
HPS3-204ENST00000462030 BACH2Q9BYV9 841 aa24.51■■□□□ 1.51
HPS3-204ENST00000462030 ARHGEF5Q12774 1597 aa24.49■■□□□ 1.51
HPS3-204ENST00000462030 PLIN1O60240 522 aa24.49■■□□□ 1.51
HPS3-204ENST00000462030 CC2D1BQ5T0F9 858 aaKnown RBP24.47■■□□□ 1.51
HPS3-204ENST00000462030 RGL3Q3MIN7 710 aa24.46■■□□□ 1.51
HPS3-204ENST00000462030 CCDC144AA2RUR9 1427 aa24.46■■□□□ 1.51
HPS3-204ENST00000462030 COL17A1Q9UMD9 1497 aaPredicted RBP24.46■■□□□ 1.51
HPS3-204ENST00000462030 MS4A1P11836 297 aa24.46■■□□□ 1.51
HPS3-204ENST00000462030 LAS1LQ9Y4W2 734 aaKnown RBP24.46■■□□□ 1.51
HPS3-204ENST00000462030 DISP3Q9P2K9 1392 aa24.45■■□□□ 1.5
HPS3-204ENST00000462030 SKAP1Q86WV1 359 aa24.44■■□□□ 1.5
HPS3-204ENST00000462030 BLMP54132 1417 aaPredicted RBP24.44■■□□□ 1.5
HPS3-204ENST00000462030 NUP160Q12769 1436 aa24.43■■□□□ 1.5
HPS3-204ENST00000462030 SAMD9LQ8IVG5 1584 aa24.42■■□□□ 1.5
HPS3-204ENST00000462030 A2MP01023 1474 aa24.42■■□□□ 1.5
HPS3-204ENST00000462030 GPRASP1Q5JY77 1395 aa24.42■■□□□ 1.5
HPS3-204ENST00000462030 CRBNQ96SW2 442 aa24.42■■□□□ 1.5
HPS3-204ENST00000462030 CCDC141Q6ZP82 1450 aa24.42■■□□□ 1.5
HPS3-204ENST00000462030 TESK2Q96S53 571 aa24.41■■□□□ 1.5
HPS3-204ENST00000462030 PRDM15P57071 1507 aaPredicted RBP24.41■■□□□ 1.5
HPS3-204ENST00000462030 PLA2R1Q13018 1463 aa24.4■■□□□ 1.5
HPS3-204ENST00000462030 ERCC6Q03468 1493 aa24.4■■□□□ 1.5
HPS3-204ENST00000462030 CDC42BPBQ9Y5S2 1711 aa24.39■■□□□ 1.5
HPS3-204ENST00000462030 PANK3Q9H999 370 aa24.39■■□□□ 1.49
HPS3-204ENST00000462030 LAMC1P11047 1609 aa24.38■■□□□ 1.49
HPS3-204ENST00000462030 MYO5CQ9NQX4 1742 aa24.38■■□□□ 1.49
HPS3-204ENST00000462030 NEFMP07197 916 aa24.38■■□□□ 1.49
HPS3-204ENST00000462030 WASHC2CQ9Y4E1 1318 aa24.36■■□□□ 1.49
HPS3-204ENST00000462030 INSRP06213 1382 aa24.36■■□□□ 1.49
HPS3-204ENST00000462030 ZMYM4Q5VZL5 1548 aa24.36■■□□□ 1.49
HPS3-204ENST00000462030 ERBINQ96RT1 1412 aa24.36■■□□□ 1.49
HPS3-204ENST00000462030 PREX2Q70Z35 1606 aa24.35■■□□□ 1.49
HPS3-204ENST00000462030 UNC13BO14795 1591 aa24.34■■□□□ 1.49
HPS3-204ENST00000462030 C20orf194Q5TEA3 1177 aa24.33■■□□□ 1.49
HPS3-204ENST00000462030 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.33■■□□□ 1.49
HPS3-204ENST00000462030 PLEKHH2Q8IVE3 1493 aa24.32■■□□□ 1.48
HPS3-204ENST00000462030 SYCP2Q9BX26 1530 aa24.3■■□□□ 1.48
HPS3-204ENST00000462030 USP35Q9P2H5 1018 aa24.3■■□□□ 1.48
HPS3-204ENST00000462030 EIF2AK4Q9P2K8 1649 aaKnown RBP24.29■■□□□ 1.48
HPS3-204ENST00000462030 TMF1P82094 1093 aa24.28■■□□□ 1.48
HPS3-204ENST00000462030 IL27Q8NEV9 243 aa24.28■■□□□ 1.48
HPS3-204ENST00000462030 ADAMTS8Q9UP79 889 aa24.28■■□□□ 1.48
HPS3-204ENST00000462030 PPM1GO15355 546 aaPredicted RBP24.27■■□□□ 1.48
HPS3-204ENST00000462030 IQGAP3Q86VI3 1631 aa24.26■■□□□ 1.47
HPS3-204ENST00000462030 KDM2BQ8NHM5 1336 aa24.25■■□□□ 1.47
HPS3-204ENST00000462030 RSPH4AQ5TD94 716 aa24.25■■□□□ 1.47
HPS3-204ENST00000462030 PLEKHH1Q9ULM0 1364 aa24.24■■□□□ 1.47
HPS3-204ENST00000462030 MAST1Q9Y2H9 1570 aa24.24■■□□□ 1.47
HPS3-204ENST00000462030 DDRGK1Q96HY6 314 aa24.23■■□□□ 1.47
HPS3-204ENST00000462030 RNF17Q9BXT8 1623 aaKnown RBP24.23■■□□□ 1.47
HPS3-204ENST00000462030 MAGI2Q86UL8 1455 aa24.22■■□□□ 1.47
HPS3-204ENST00000462030 TTC37Q6PGP7 1564 aa24.21■■□□□ 1.47
HPS3-204ENST00000462030 ARHGAP5Q13017 1502 aa24.21■■□□□ 1.47
HPS3-204ENST00000462030 WDR7Q9Y4E6 1490 aa24.2■■□□□ 1.46
HPS3-204ENST00000462030 DUSP27Q5VZP5 1158 aa24.2■■□□□ 1.46
HPS3-204ENST00000462030 PPP2R1AP30153 589 aa24.19■■□□□ 1.46
HPS3-204ENST00000462030 SLC4A3P48751 1232 aa24.18■■□□□ 1.46
HPS3-204ENST00000462030 PLXNC1O60486 1568 aa24.18■■□□□ 1.46
HPS3-204ENST00000462030 CENPQQ7L2Z9 268 aaPredicted RBP24.17■■□□□ 1.46
HPS3-204ENST00000462030 WDR43Q15061 677 aaKnown RBP eCLIP24.16■■□□□ 1.46
HPS3-204ENST00000462030 RTN4Q9NQC3 1192 aaKnown RBP24.16■■□□□ 1.46
HPS3-204ENST00000462030 ATP10AO60312 1499 aa24.16■■□□□ 1.46
HPS3-204ENST00000462030 ZNF521Q96K83 1311 aa24.15■■□□□ 1.46
HPS3-204ENST00000462030 KNSTRNQ9Y448 316 aa24.15■■□□□ 1.46
HPS3-204ENST00000462030 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.14■■□□□ 1.45
HPS3-204ENST00000462030 AMER1Q5JTC6 1135 aaPredicted RBP24.12■■□□□ 1.45
HPS3-204ENST00000462030 IQGAP1P46940 1657 aa24.12■■□□□ 1.45
HPS3-204ENST00000462030 C8orf34Q49A92 452 aa24.12■■□□□ 1.45
HPS3-204ENST00000462030 GOLGA2Q08379 1002 aa24.11■■□□□ 1.45
HPS3-204ENST00000462030 NFKBIBQ15653 356 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms