RNA–Protein interactions for RNA: ENST00000461558.2

CFHR3-204, Transcript of complement factor H related 3, humanhuman

TSL 2

Gene CFHR3, Length 785 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CFHR3-204ENST00000461558 BBXQ8WY36 941 aaPredicted RBP13.09□□□□□ -0.31
CFHR3-204ENST00000461558 FBXW7Q969H0 707 aa13.08□□□□□ -0.32
CFHR3-204ENST00000461558 CAMK2BQ13554 666 aa13.07□□□□□ -0.32
CFHR3-204ENST00000461558 COL9A1P20849 921 aa13.06□□□□□ -0.32
CFHR3-204ENST00000461558 TYW1BQ6NUM6 668 aa13.06□□□□□ -0.32
CFHR3-204ENST00000461558 PHF14O94880 888 aa13.05□□□□□ -0.32
CFHR3-204ENST00000461558 LAPTM4BQ86VI4 370 aa13.04□□□□□ -0.32
CFHR3-204ENST00000461558 ITGBL1O95965 494 aaPredicted RBP13.03□□□□□ -0.32
CFHR3-204ENST00000461558 DPYSL4O14531 572 aa13.02□□□□□ -0.33
CFHR3-204ENST00000461558 BCAMP50895 628 aa13.02□□□□□ -0.33
CFHR3-204ENST00000461558 SOWAHBA6NEL2 793 aa13.01□□□□□ -0.33
CFHR3-204ENST00000461558 NYAP1Q6ZVC0 841 aa12.99□□□□□ -0.33
CFHR3-204ENST00000461558 KIAA1468Q9P260 1216 aa12.99□□□□□ -0.33
CFHR3-204ENST00000461558 ZFRQ96KR1 1074 aaKnown RBP12.98□□□□□ -0.33
CFHR3-204ENST00000461558 ONECUT3O60422 494 aaPredicted RBP12.97□□□□□ -0.33
CFHR3-204ENST00000461558 EPAS1Q99814 870 aa12.97□□□□□ -0.33
CFHR3-204ENST00000461558 C6orf132Q5T0Z8 1188 aa12.95□□□□□ -0.34
CFHR3-204ENST00000461558 AMER1Q5JTC6 1135 aaPredicted RBP12.94□□□□□ -0.34
CFHR3-204ENST00000461558 SPRYD3Q8NCJ5 442 aa12.94□□□□□ -0.34
CFHR3-204ENST00000461558 WBP1LQ9NX94 342 aa12.93□□□□□ -0.34
CFHR3-204ENST00000461558 SEPT9Q9UHD8 586 aaPredicted RBP12.93□□□□□ -0.34
CFHR3-204ENST00000461558 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.92□□□□□ -0.34
CFHR3-204ENST00000461558 TRIM6-TRIM34B2RNG4 842 aa12.91□□□□□ -0.34
CFHR3-204ENST00000461558 KCNC4Q03721 635 aa12.91□□□□□ -0.34
CFHR3-204ENST00000461558 FAM98CQ17RN3 349 aaKnown RBP12.9□□□□□ -0.34
CFHR3-204ENST00000461558 DDX12PQ92771 950 aa12.9□□□□□ -0.34
CFHR3-204ENST00000461558 RBM33Q96EV2 1170 aaKnown RBP12.88□□□□□ -0.35
CFHR3-204ENST00000461558 PDIA6Q15084 440 aa12.87□□□□□ -0.35
CFHR3-204ENST00000461558 LRCH3Q96II8 777 aa12.87□□□□□ -0.35
CFHR3-204ENST00000461558 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.87□□□□□ -0.35
CFHR3-204ENST00000461558 RTN4Q9NQC3 1192 aaKnown RBP12.86□□□□□ -0.35
CFHR3-204ENST00000461558 TSR3Q9UJK0 312 aaKnown RBP12.86□□□□□ -0.35
CFHR3-204ENST00000461558 Q6ZNB5 142 aa12.85□□□□□ -0.35
CFHR3-204ENST00000461558 HPS5Q9UPZ3 1129 aa12.85□□□□□ -0.35
CFHR3-204ENST00000461558 SPDYE16A6NNV3 312 aaPredicted RBP12.83□□□□□ -0.36
CFHR3-204ENST00000461558 NBR1Q14596 966 aa12.83□□□□□ -0.36
CFHR3-204ENST00000461558 EN1Q05925 392 aaPredicted RBP12.82□□□□□ -0.36
CFHR3-204ENST00000461558 PAXIP1Q6ZW49 1069 aaPredicted RBP12.81□□□□□ -0.36
CFHR3-204ENST00000461558 CFAP44Q96MT7 982 aa12.81□□□□□ -0.36
CFHR3-204ENST00000461558 E2F4Q16254 413 aa12.8□□□□□ -0.36
CFHR3-204ENST00000461558 MAP3K7O43318 606 aa12.79□□□□□ -0.36
CFHR3-204ENST00000461558 TSR1Q2NL82 804 aaKnown RBP12.79□□□□□ -0.36
CFHR3-204ENST00000461558 PACS2Q86VP3 889 aa12.79□□□□□ -0.36
CFHR3-204ENST00000461558 TSKSQ9UJT2 592 aa12.77□□□□□ -0.37
CFHR3-204ENST00000461558 ARIH1Q9Y4X5 557 aaPredicted RBP12.77□□□□□ -0.37
CFHR3-204ENST00000461558 WDR70Q9NW82 654 aa12.76□□□□□ -0.37
CFHR3-204ENST00000461558 PPP4CP60510 307 aa12.74□□□□□ -0.37
CFHR3-204ENST00000461558 LAPTM4AQ15012 233 aa12.74□□□□□ -0.37
CFHR3-204ENST00000461558 PRIM1P49642 420 aaKnown RBP12.71□□□□□ -0.37
CFHR3-204ENST00000461558 GRXCR2A6NFK2 248 aa12.69□□□□□ -0.38
CFHR3-204ENST00000461558 CDCA7LQ96GN5 454 aa12.69□□□□□ -0.38
CFHR3-204ENST00000461558 SAMD7Q7Z3H4 446 aa12.68□□□□□ -0.38
CFHR3-204ENST00000461558 SMAPO00193 183 aa12.67□□□□□ -0.38
CFHR3-204ENST00000461558 PRSS12P56730 875 aa12.67□□□□□ -0.38
CFHR3-204ENST00000461558 CERKQ8TCT0 537 aa12.67□□□□□ -0.38
CFHR3-204ENST00000461558 TJAP1Q5JTD0 557 aa12.66□□□□□ -0.38
CFHR3-204ENST00000461558 GFRA3O60609 400 aa12.65□□□□□ -0.38
CFHR3-204ENST00000461558 FAM198AQ9UFP1 575 aa12.65□□□□□ -0.38
CFHR3-204ENST00000461558 NBPF26B4DH59 902 aa12.64□□□□□ -0.39
CFHR3-204ENST00000461558 LCE2BO14633 110 aa12.63□□□□□ -0.39
CFHR3-204ENST00000461558 OSBPP22059 807 aa12.63□□□□□ -0.39
CFHR3-204ENST00000461558 TATDN2Q93075 761 aa12.62□□□□□ -0.39
CFHR3-204ENST00000461558 MTRQ99707 1265 aa12.62□□□□□ -0.39
CFHR3-204ENST00000461558 CDHR5Q9HBB8 845 aa12.62□□□□□ -0.39
CFHR3-204ENST00000461558 IL21Q9HBE4 155 aa12.62□□□□□ -0.39
CFHR3-204ENST00000461558 PNMA3Q9UL41 463 aa12.62□□□□□ -0.39
CFHR3-204ENST00000461558 PRKD2Q9BZL6 878 aa12.61□□□□□ -0.39
CFHR3-204ENST00000461558 C3orf80F5H4A9 247 aa12.6□□□□□ -0.39
CFHR3-204ENST00000461558 TRAF7Q6Q0C0 670 aa12.6□□□□□ -0.39
CFHR3-204ENST00000461558 RNF40O75150 1001 aa12.59□□□□□ -0.39
CFHR3-204ENST00000461558 HDGFP51858 240 aaKnown RBP12.58□□□□□ -0.4
CFHR3-204ENST00000461558 PPP1R18Q6NYC8 613 aa12.58□□□□□ -0.4
CFHR3-204ENST00000461558 RBM27Q9P2N5 1060 aaKnown RBP12.58□□□□□ -0.4
CFHR3-204ENST00000461558 NRG2O14511 850 aaPredicted RBP12.56□□□□□ -0.4
CFHR3-204ENST00000461558 V9GY48 417 aaPredicted RBP12.56□□□□□ -0.4
CFHR3-204ENST00000461558 NUDT18Q6ZVK8 323 aa12.55□□□□□ -0.4
CFHR3-204ENST00000461558 ZNF516Q92618 1163 aa12.53□□□□□ -0.4
CFHR3-204ENST00000461558 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.53□□□□□ -0.4
CFHR3-204ENST00000461558 APLP1P51693 650 aa12.52□□□□□ -0.41
CFHR3-204ENST00000461558 NECTIN2Q92692 538 aa12.52□□□□□ -0.41
CFHR3-204ENST00000461558 TSHZ2Q9NRE2 1034 aa12.51□□□□□ -0.41
CFHR3-204ENST00000461558 TTC13Q8NBP0 860 aa12.5□□□□□ -0.41
CFHR3-204ENST00000461558 NPDC1Q9NQX5 325 aaPredicted RBP12.5□□□□□ -0.41
CFHR3-204ENST00000461558 PADI6Q6TGC4 694 aa12.49□□□□□ -0.41
CFHR3-204ENST00000461558 ARHGEF1Q92888 912 aaKnown RBP12.48□□□□□ -0.41
CFHR3-204ENST00000461558 GGCXP38435 758 aa12.47□□□□□ -0.41
CFHR3-204ENST00000461558 SLF2Q8IX21 1173 aa12.46□□□□□ -0.41
CFHR3-204ENST00000461558 SWT1Q5T5J6 900 aaKnown RBP12.45□□□□□ -0.42
CFHR3-204ENST00000461558 NKX2-3Q8TAU0 364 aa12.45□□□□□ -0.42
CFHR3-204ENST00000461558 KCNV2Q8TDN2 545 aa12.45□□□□□ -0.42
CFHR3-204ENST00000461558 MLLT3P42568 568 aaPredicted RBP12.44□□□□□ -0.42
CFHR3-204ENST00000461558 COPS2P61201 443 aa12.44□□□□□ -0.42
CFHR3-204ENST00000461558 PDZRN3Q9UPQ7 1066 aa12.44□□□□□ -0.42
CFHR3-204ENST00000461558 SLC4A3P48751 1232 aa12.43□□□□□ -0.42
CFHR3-204ENST00000461558 EYA1Q99502 592 aa12.39□□□□□ -0.43
CFHR3-204ENST00000461558 TMUB1Q9BVT8 246 aa12.39□□□□□ -0.43
CFHR3-204ENST00000461558 ZPR1O75312 459 aa12.37□□□□□ -0.43
CFHR3-204ENST00000461558 PRR14Q9BWN1 585 aa12.37□□□□□ -0.43
CFHR3-204ENST00000461558 ZNF787Q6DD87 383 aa12.36□□□□□ -0.43
CFHR3-204ENST00000461558 PTGDRQ13258 359 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms