RNA–Protein interactions for RNA: ENST00000461558.2

CFHR3-204, Transcript of complement factor H related 3, humanhuman

TSL 2

Gene CFHR3, Length 785 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CFHR3-204ENST00000461558 AEBP2Q6ZN18 517 aaPredicted RBP32.73■■■□□ 2.83
CFHR3-204ENST00000461558 CHIC1Q5VXU3 224 aa30.89■■■□□ 2.54
CFHR3-204ENST00000461558 SENP3Q9H4L4 574 aaPredicted RBP28.03■■■□□ 2.08
CFHR3-204ENST00000461558 PHF23Q9BUL5 403 aaPredicted RBP27.6■■■□□ 2.01
CFHR3-204ENST00000461558 FOXD1Q16676 465 aa26.12■■□□□ 1.77
CFHR3-204ENST00000461558 POTEDQ86YR6 584 aa24.87■■□□□ 1.57
CFHR3-204ENST00000461558 PLPPR3Q6T4P5 718 aa24.61■■□□□ 1.53
CFHR3-204ENST00000461558 MSH5O43196 834 aa24.59■■□□□ 1.53
CFHR3-204ENST00000461558 PIAS4Q8N2W9 510 aaPredicted RBP24.39■■□□□ 1.49
CFHR3-204ENST00000461558 PPP6R1Q9UPN7 881 aa24.2■■□□□ 1.46
CFHR3-204ENST00000461558 ADRA2BP18089 450 aa24.13■■□□□ 1.45
CFHR3-204ENST00000461558 MAPK8IP2Q13387 824 aaPredicted RBP22.22■■□□□ 1.15
CFHR3-204ENST00000461558 DMRT2Q9Y5R5 561 aa22.17■■□□□ 1.14
CFHR3-204ENST00000461558 SCAF1Q9H7N4 1312 aaKnown RBP22.15■■□□□ 1.14
CFHR3-204ENST00000461558 PPP4R3CPQ6ZMV5 832 aa21.52■■□□□ 1.04
CFHR3-204ENST00000461558 CACNB1Q02641 598 aaPredicted RBP21.34■■□□□ 1.01
CFHR3-204ENST00000461558 DCAF8L1A6NGE4 600 aa21.32■■□□□ 1
CFHR3-204ENST00000461558 HOXD11P31277 338 aaPredicted RBP21.26■□□□□ 0.99
CFHR3-204ENST00000461558 CNKSR2Q8WXI2 1034 aa21.19■□□□□ 0.98
CFHR3-204ENST00000461558 RNF216Q9NWF9 866 aaPredicted RBP21.05■□□□□ 0.96
CFHR3-204ENST00000461558 RNF39Q9H2S5 420 aa20.91■□□□□ 0.94
CFHR3-204ENST00000461558 NCBP3Q53F19 620 aaKnown RBP20.65■□□□□ 0.9
CFHR3-204ENST00000461558 C1QBPQ07021 282 aaKnown RBP20.62■□□□□ 0.89
CFHR3-204ENST00000461558 DNAJC5BQ9UF47 199 aa20.58■□□□□ 0.89
CFHR3-204ENST00000461558 NPM3O75607 178 aaKnown RBP20.31■□□□□ 0.84
CFHR3-204ENST00000461558 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.28■□□□□ 0.84
CFHR3-204ENST00000461558 KCNA4P22459 653 aa19.81■□□□□ 0.76
CFHR3-204ENST00000461558 U3KPZ7 1027 aaPredicted RBP19.8■□□□□ 0.76
CFHR3-204ENST00000461558 CAPN15O75808 1086 aa19.6■□□□□ 0.73
CFHR3-204ENST00000461558 SPINK5Q9NQ38 1064 aaPredicted RBP19.58■□□□□ 0.72
CFHR3-204ENST00000461558 DSG3P32926 999 aa19.51■□□□□ 0.71
CFHR3-204ENST00000461558 SLC4A2P04920 1241 aa19.44■□□□□ 0.7
CFHR3-204ENST00000461558 POTEHQ6S545 545 aa19.35■□□□□ 0.69
CFHR3-204ENST00000461558 APLP2Q06481 763 aa19.3■□□□□ 0.68
CFHR3-204ENST00000461558 TRHP20396 242 aaPredicted RBP19.22■□□□□ 0.67
CFHR3-204ENST00000461558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.21■□□□□ 0.67
CFHR3-204ENST00000461558 HNRNPUL2Q1KMD3 747 aaKnown RBP19.21■□□□□ 0.67
CFHR3-204ENST00000461558 ZNF219Q9P2Y4 722 aaPredicted RBP19.2■□□□□ 0.66
CFHR3-204ENST00000461558 ABCB7O75027 752 aa19.11■□□□□ 0.65
CFHR3-204ENST00000461558 SAMD1Q6SPF0 538 aaPredicted RBP19.08■□□□□ 0.64
CFHR3-204ENST00000461558 MYCNP04198 464 aaPredicted RBP18.83■□□□□ 0.6
CFHR3-204ENST00000461558 SLC4A1APQ9BWU0 796 aaKnown RBP18.71■□□□□ 0.59
CFHR3-204ENST00000461558 RBM42Q9BTD8 480 aaKnown RBP18.68■□□□□ 0.58
CFHR3-204ENST00000461558 POLA2Q14181 598 aa18.64■□□□□ 0.57
CFHR3-204ENST00000461558 FOXD4L1Q9NU39 408 aa18.5■□□□□ 0.55
CFHR3-204ENST00000461558 ATF5Q9Y2D1 282 aaPredicted RBP18.35■□□□□ 0.53
CFHR3-204ENST00000461558 CHRDL2Q6WN34 429 aa18.33■□□□□ 0.52
CFHR3-204ENST00000461558 ZBTB12Q9Y330 459 aaPredicted RBP18.29■□□□□ 0.52
CFHR3-204ENST00000461558 ZBTB22O15209 634 aa18.22■□□□□ 0.51
CFHR3-204ENST00000461558 AKT1S1Q96B36 256 aa18.16■□□□□ 0.5
CFHR3-204ENST00000461558 OSCARQ8IYS5 282 aa18.06■□□□□ 0.48
CFHR3-204ENST00000461558 REM2Q8IYK8 340 aaPredicted RBP17.97■□□□□ 0.47
CFHR3-204ENST00000461558 ATXN8OSP0DMR3 200 aa17.94■□□□□ 0.46
CFHR3-204ENST00000461558 SP7Q8TDD2 431 aaPredicted RBP17.88■□□□□ 0.45
CFHR3-204ENST00000461558 PIP4P2Q8N4L2 257 aa17.83■□□□□ 0.44
CFHR3-204ENST00000461558 PITPNM1O00562 1244 aa17.8■□□□□ 0.44
CFHR3-204ENST00000461558 FBLN2P98095 1184 aa17.73■□□□□ 0.43
CFHR3-204ENST00000461558 FXR2P51116 673 aaKnown RBP eCLIP17.68■□□□□ 0.42
CFHR3-204ENST00000461558 SPDYE2BA6NHP3 402 aa17.67■□□□□ 0.42
CFHR3-204ENST00000461558 SPDYE6P0CI01 402 aa17.67■□□□□ 0.42
CFHR3-204ENST00000461558 SPDYE2Q495Y8 402 aa17.67■□□□□ 0.42
CFHR3-204ENST00000461558 HAX1O00165 279 aa17.6■□□□□ 0.41
CFHR3-204ENST00000461558 MKRN4PQ13434 485 aaPredicted RBP17.5■□□□□ 0.39
CFHR3-204ENST00000461558 SPDYE1Q8NFV5 336 aaPredicted RBP17.44■□□□□ 0.38
CFHR3-204ENST00000461558 ZNF692Q9BU19 519 aaPredicted RBP17.43■□□□□ 0.38
CFHR3-204ENST00000461558 CLEC11AQ9Y240 323 aa17.43■□□□□ 0.38
CFHR3-204ENST00000461558 CSRNP3Q8WYN3 585 aa17.42■□□□□ 0.38
CFHR3-204ENST00000461558 EVX2Q03828 476 aa17.39■□□□□ 0.37
CFHR3-204ENST00000461558 SSUH2Q9Y2M2 353 aa17.39■□□□□ 0.37
CFHR3-204ENST00000461558 PRKAR2AP13861 404 aaKnown RBP17.35■□□□□ 0.37
CFHR3-204ENST00000461558 EHMT2Q96KQ7 1210 aa17.23■□□□□ 0.35
CFHR3-204ENST00000461558 PABPN1Q86U42 306 aaKnown RBP eCLIP17.15■□□□□ 0.34
CFHR3-204ENST00000461558 C19orf67A6NJJ6 358 aa17.12■□□□□ 0.33
CFHR3-204ENST00000461558 PRR29P0C7W0 189 aa17.1■□□□□ 0.33
CFHR3-204ENST00000461558 CHADLQ6NUI6 762 aa17.08■□□□□ 0.32
CFHR3-204ENST00000461558 GABBR2O75899 941 aa16.93■□□□□ 0.3
CFHR3-204ENST00000461558 FARP1Q9Y4F1 1045 aaPredicted RBP16.81■□□□□ 0.28
CFHR3-204ENST00000461558 CD44P16070 742 aaKnown RBP16.79■□□□□ 0.28
CFHR3-204ENST00000461558 LHX8Q68G74 356 aa16.78■□□□□ 0.28
CFHR3-204ENST00000461558 STAG3Q9UJ98 1225 aa16.66■□□□□ 0.26
CFHR3-204ENST00000461558 CLCN6P51797 869 aa16.63■□□□□ 0.25
CFHR3-204ENST00000461558 SPDYE4A6NLX3 237 aa16.6■□□□□ 0.25
CFHR3-204ENST00000461558 POTEIP0CG38 1075 aa16.59■□□□□ 0.25
CFHR3-204ENST00000461558 CREBZFQ9NS37 354 aa16.57■□□□□ 0.24
CFHR3-204ENST00000461558 ZRANB1Q9UGI0 708 aa16.52■□□□□ 0.24
CFHR3-204ENST00000461558 ZNF579Q8NAF0 562 aaKnown RBP16.51■□□□□ 0.23
CFHR3-204ENST00000461558 DCBLD2Q96PD2 775 aa16.47■□□□□ 0.23
CFHR3-204ENST00000461558 PAK3O75914 559 aaPredicted RBP16.37■□□□□ 0.21
CFHR3-204ENST00000461558 GALR2O43603 387 aaPredicted RBP16.32■□□□□ 0.2
CFHR3-204ENST00000461558 NPM1P06748 294 aaKnown RBP eCLIP16.32■□□□□ 0.2
CFHR3-204ENST00000461558 MNX1P50219 401 aaPredicted RBP16.24■□□□□ 0.19
CFHR3-204ENST00000461558 PHF12Q96QT6 1004 aa16.24■□□□□ 0.19
CFHR3-204ENST00000461558 PROM2Q8N271 834 aa16.2■□□□□ 0.18
CFHR3-204ENST00000461558 PLSCR2Q9NRY7 297 aa16.13■□□□□ 0.17
CFHR3-204ENST00000461558 OTUD5Q96G74 571 aa16.06■□□□□ 0.16
CFHR3-204ENST00000461558 POTEB2H3BUK9 544 aa16.04■□□□□ 0.16
CFHR3-204ENST00000461558 MS4A3Q96HJ5 214 aa16.03■□□□□ 0.16
CFHR3-204ENST00000461558 PELP1Q8IZL8 1130 aaKnown RBP15.99■□□□□ 0.15
CFHR3-204ENST00000461558 TSPYL2Q9H2G4 693 aaPredicted RBP15.99■□□□□ 0.15
CFHR3-204ENST00000461558 ASTLQ6HA08 431 aaPredicted RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms