RNA–Protein interactions for RNA: ENST00000441542.6

HDAC9-214, Transcript of histone deacetylase 9, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HDAC9, Length 3,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-214ENST00000441542 KDM5BQ9UGL1 1544 aa9.72□□□□□ -0.85
HDAC9-214ENST00000441542 IFT140Q96RY7 1462 aa9.72□□□□□ -0.85
HDAC9-214ENST00000441542 ARHGEF11O15085 1522 aa9.71□□□□□ -0.86
HDAC9-214ENST00000441542 URB2Q14146 1524 aaKnown RBP9.7□□□□□ -0.86
HDAC9-214ENST00000441542 PCF11O94913 1555 aaKnown RBP9.7□□□□□ -0.86
HDAC9-214ENST00000441542 ZNF777Q9ULD5 760 aaPredicted RBP9.7□□□□□ -0.86
HDAC9-214ENST00000441542 MYBBP1AQ9BQG0 1328 aaKnown RBP9.7□□□□□ -0.86
HDAC9-214ENST00000441542 CANXP27824 592 aaKnown RBP9.7□□□□□ -0.86
HDAC9-214ENST00000441542 BECN1Q14457 450 aa9.7□□□□□ -0.86
HDAC9-214ENST00000441542 CENPQQ7L2Z9 268 aaPredicted RBP9.7□□□□□ -0.86
HDAC9-214ENST00000441542 KTN1Q86UP2 1357 aaKnown RBP9.7□□□□□ -0.86
HDAC9-214ENST00000441542 TRIM44Q96DX7 344 aaPredicted RBP9.69□□□□□ -0.86
HDAC9-214ENST00000441542 CUX1P39880 1505 aa9.69□□□□□ -0.86
HDAC9-214ENST00000441542 RRP9O43818 475 aaKnown RBP9.69□□□□□ -0.86
HDAC9-214ENST00000441542 PTPN23Q9H3S7 1636 aa9.68□□□□□ -0.86
HDAC9-214ENST00000441542 RAD54L2Q9Y4B4 1467 aa9.68□□□□□ -0.86
HDAC9-214ENST00000441542 CHD1O14646 1710 aa9.68□□□□□ -0.86
HDAC9-214ENST00000441542 CCDC146Q8IYE0 955 aa9.67□□□□□ -0.86
HDAC9-214ENST00000441542 PLCB2Q00722 1185 aa9.67□□□□□ -0.86
HDAC9-214ENST00000441542 CDK11BP21127 795 aaKnown RBP9.67□□□□□ -0.86
HDAC9-214ENST00000441542 NLRP13Q86W25 1043 aa9.67□□□□□ -0.86
HDAC9-214ENST00000441542 CHMP7Q8WUX9 453 aaPredicted RBP9.67□□□□□ -0.86
HDAC9-214ENST00000441542 MYH16Q9H6N6 1097 aa9.67□□□□□ -0.86
HDAC9-214ENST00000441542 ZNF644Q9H582 1327 aaPredicted RBP9.66□□□□□ -0.86
HDAC9-214ENST00000441542 RGL3Q3MIN7 710 aa9.66□□□□□ -0.86
HDAC9-214ENST00000441542 FOXD4L1Q9NU39 408 aa9.66□□□□□ -0.86
HDAC9-214ENST00000441542 KIF15Q9NS87 1388 aa9.66□□□□□ -0.86
HDAC9-214ENST00000441542 ZNF608Q9ULD9 1512 aaPredicted RBP9.65□□□□□ -0.86
HDAC9-214ENST00000441542 BCAR3O75815 825 aa9.65□□□□□ -0.86
HDAC9-214ENST00000441542 PKD2Q13563 968 aa9.65□□□□□ -0.86
HDAC9-214ENST00000441542 OSCARQ8IYS5 282 aa9.65□□□□□ -0.86
HDAC9-214ENST00000441542 FAM13BQ9NYF5 915 aa9.65□□□□□ -0.86
HDAC9-214ENST00000441542 ERCC6L2Q5T890 1561 aa9.65□□□□□ -0.86
HDAC9-214ENST00000441542 KIF13AQ9H1H9 1805 aa9.65□□□□□ -0.87
HDAC9-214ENST00000441542 IGHDP01880 384 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 CLCN1P35523 988 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 PDE3BQ13370 1112 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 RALBP1Q15311 655 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 UPF2Q9HAU5 1272 aaKnown RBP9.64□□□□□ -0.87
HDAC9-214ENST00000441542 TOPBP1Q92547 1522 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 ESPNB1AK53 854 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 PRDM10Q9NQV6 1147 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 ADAMTS8Q9UP79 889 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 ERBB4Q15303 1308 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 KDM2BQ8NHM5 1336 aa9.64□□□□□ -0.87
HDAC9-214ENST00000441542 TRAK2O60296 914 aa9.63□□□□□ -0.87
HDAC9-214ENST00000441542 WDR43Q15061 677 aaKnown RBP eCLIP9.63□□□□□ -0.87
HDAC9-214ENST00000441542 COG6Q9Y2V7 657 aa9.63□□□□□ -0.87
HDAC9-214ENST00000441542 MYOM3Q5VTT5 1437 aa9.63□□□□□ -0.87
HDAC9-214ENST00000441542 AAMPQ13685 434 aa9.63□□□□□ -0.87
HDAC9-214ENST00000441542 NEUROD2Q15784 382 aa9.63□□□□□ -0.87
HDAC9-214ENST00000441542 DNMBPQ6XZF7 1577 aa9.62□□□□□ -0.87
HDAC9-214ENST00000441542 DENND4BO75064 1496 aaPredicted RBP9.62□□□□□ -0.87
HDAC9-214ENST00000441542 RSPH4AQ5TD94 716 aa9.62□□□□□ -0.87
HDAC9-214ENST00000441542 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.62□□□□□ -0.87
HDAC9-214ENST00000441542 PANK1Q8TE04 598 aa9.62□□□□□ -0.87
HDAC9-214ENST00000441542 BRD4O60885 1362 aaPredicted RBP9.62□□□□□ -0.87
HDAC9-214ENST00000441542 MFAP1P55081 439 aaKnown RBP9.62□□□□□ -0.87
HDAC9-214ENST00000441542 TBC1D2Q9BYX2 928 aa9.62□□□□□ -0.87
HDAC9-214ENST00000441542 EIF4G3O43432 1585 aaKnown RBP9.62□□□□□ -0.87
HDAC9-214ENST00000441542 MCM4P33991 863 aa9.61□□□□□ -0.87
HDAC9-214ENST00000441542 KIAA1211Q6ZU35 1233 aa9.61□□□□□ -0.87
HDAC9-214ENST00000441542 ANKRD30BQ9BXX2 1392 aa9.61□□□□□ -0.87
HDAC9-214ENST00000441542 BCL2L13Q9BXK5 485 aa9.61□□□□□ -0.87
HDAC9-214ENST00000441542 SPATA31E1Q6ZUB1 1445 aa9.61□□□□□ -0.87
HDAC9-214ENST00000441542 CLUAP1Q96AJ1 413 aa9.61□□□□□ -0.87
HDAC9-214ENST00000441542 GRPEL1Q9HAV7 217 aa9.6□□□□□ -0.87
HDAC9-214ENST00000441542 ZHX1Q9UKY1 873 aaPredicted RBP9.6□□□□□ -0.87
HDAC9-214ENST00000441542 KDM6BO15054 1643 aa9.6□□□□□ -0.87
HDAC9-214ENST00000441542 HSP90B1P14625 803 aaKnown RBP9.6□□□□□ -0.87
HDAC9-214ENST00000441542 USP19O94966 1318 aa9.6□□□□□ -0.87
HDAC9-214ENST00000441542 LRPPRCP42704 1394 aaKnown RBP9.6□□□□□ -0.87
HDAC9-214ENST00000441542 FGD5Q6ZNL6 1462 aa9.6□□□□□ -0.87
HDAC9-214ENST00000441542 PANK3Q9H999 370 aa9.6□□□□□ -0.87
HDAC9-214ENST00000441542 CASKIN1Q8WXD9 1431 aa9.59□□□□□ -0.87
HDAC9-214ENST00000441542 POLA1P09884 1462 aaPredicted RBP9.59□□□□□ -0.87
HDAC9-214ENST00000441542 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.59□□□□□ -0.87
HDAC9-214ENST00000441542 NCLP19338 710 aaKnown RBP9.58□□□□□ -0.88
HDAC9-214ENST00000441542 GOLGA2Q08379 1002 aa9.58□□□□□ -0.88
HDAC9-214ENST00000441542 R3HCC1Q9Y3T6 440 aaKnown RBP9.58□□□□□ -0.88
HDAC9-214ENST00000441542 MRE11P49959 708 aa9.57□□□□□ -0.88
HDAC9-214ENST00000441542 CYB5RLQ6IPT4 315 aa9.57□□□□□ -0.88
HDAC9-214ENST00000441542 SPINK5Q9NQ38 1064 aaPredicted RBP9.57□□□□□ -0.88
HDAC9-214ENST00000441542 DUSP27Q5VZP5 1158 aa9.56□□□□□ -0.88
HDAC9-214ENST00000441542 FYCO1Q9BQS8 1478 aa9.56□□□□□ -0.88
HDAC9-214ENST00000441542 APAF1O14727 1248 aa9.56□□□□□ -0.88
HDAC9-214ENST00000441542 NBPF1Q3BBV0 1214 aa9.56□□□□□ -0.88
HDAC9-214ENST00000441542 TNNQ9UQP3 1299 aa9.56□□□□□ -0.88
HDAC9-214ENST00000441542 GLI2P10070 1586 aa9.56□□□□□ -0.88
HDAC9-214ENST00000441542 RPRD2Q5VT52 1461 aaKnown RBP9.56□□□□□ -0.88
HDAC9-214ENST00000441542 GAS2L3Q86XJ1 694 aa9.55□□□□□ -0.88
HDAC9-214ENST00000441542 ANTXR1Q9H6X2 564 aa9.55□□□□□ -0.88
HDAC9-214ENST00000441542 ROCK2O75116 1388 aaKnown RBP9.55□□□□□ -0.88
HDAC9-214ENST00000441542 RRP7AQ9Y3A4 280 aaKnown RBP9.54□□□□□ -0.88
HDAC9-214ENST00000441542 PLEKHH1Q9ULM0 1364 aa9.54□□□□□ -0.88
HDAC9-214ENST00000441542 FSD2A1L4K1 749 aa9.54□□□□□ -0.88
HDAC9-214ENST00000441542 BCCIPQ9P287 314 aaKnown RBP eCLIP9.54□□□□□ -0.88
HDAC9-214ENST00000441542 TEX14Q8IWB6 1497 aa9.54□□□□□ -0.88
HDAC9-214ENST00000441542 MSNP26038 577 aaKnown RBP9.54□□□□□ -0.88
HDAC9-214ENST00000441542 MPNDQ8N594 471 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms