RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ARHGEF1Q92888 912 aaKnown RBP8.56□□□□□ -1.04
VPS41-207ENST00000439468 PTGER2P43116 358 aa8.55□□□□□ -1.04
VPS41-207ENST00000439468 ADGRD1Q6QNK2 874 aa8.55□□□□□ -1.04
VPS41-207ENST00000439468 MAP3K7O43318 606 aa8.54□□□□□ -1.04
VPS41-207ENST00000439468 STAC3Q96MF2 364 aa8.54□□□□□ -1.04
VPS41-207ENST00000439468 MYT1LQ9UL68 1186 aa8.53□□□□□ -1.04
VPS41-207ENST00000439468 KDM2AQ9Y2K7 1162 aa8.53□□□□□ -1.04
VPS41-207ENST00000439468 VSIG10Q8N0Z9 540 aa8.52□□□□□ -1.05
VPS41-207ENST00000439468 PPP1R3GB7ZBB8 358 aa8.5□□□□□ -1.05
VPS41-207ENST00000439468 TK2O00142 265 aa8.5□□□□□ -1.05
VPS41-207ENST00000439468 EN1Q05925 392 aaPredicted RBP8.5□□□□□ -1.05
VPS41-207ENST00000439468 C6orf132Q5T0Z8 1188 aa8.5□□□□□ -1.05
VPS41-207ENST00000439468 RNF166Q96A37 237 aaPredicted RBP8.5□□□□□ -1.05
VPS41-207ENST00000439468 COL9A1P20849 921 aa8.49□□□□□ -1.05
VPS41-207ENST00000439468 TSR1Q2NL82 804 aaKnown RBP8.49□□□□□ -1.05
VPS41-207ENST00000439468 VPS9D1Q9Y2B5 631 aa8.49□□□□□ -1.05
VPS41-207ENST00000439468 ZBED2Q9BTP6 218 aa8.48□□□□□ -1.05
VPS41-207ENST00000439468 MLLT3P42568 568 aaPredicted RBP8.47□□□□□ -1.05
VPS41-207ENST00000439468 PROX2Q3B8N5 592 aa8.47□□□□□ -1.05
VPS41-207ENST00000439468 SEMA3EO15041 775 aa8.46□□□□□ -1.06
VPS41-207ENST00000439468 OSBPP22059 807 aa8.46□□□□□ -1.06
VPS41-207ENST00000439468 SLC4A5Q9BY07 1137 aa8.45□□□□□ -1.06
VPS41-207ENST00000439468 GOLGA8CPA6NN73 597 aa8.44□□□□□ -1.06
VPS41-207ENST00000439468 HRO43593 1189 aa8.44□□□□□ -1.06
VPS41-207ENST00000439468 PRIM1P49642 420 aaKnown RBP8.44□□□□□ -1.06
VPS41-207ENST00000439468 NBPF3Q9H094 633 aa8.44□□□□□ -1.06
VPS41-207ENST00000439468 MRPL50Q8N5N7 158 aaKnown RBP8.43□□□□□ -1.06
VPS41-207ENST00000439468 CDHR5Q9HBB8 845 aa8.43□□□□□ -1.06
VPS41-207ENST00000439468 KCTD12Q96CX2 325 aaKnown RBP8.41□□□□□ -1.06
VPS41-207ENST00000439468 KIAA1468Q9P260 1216 aa8.41□□□□□ -1.06
VPS41-207ENST00000439468 TRIM6-TRIM34B2RNG4 842 aa8.4□□□□□ -1.06
VPS41-207ENST00000439468 RABGEF1Q9UJ41 708 aa8.4□□□□□ -1.06
VPS41-207ENST00000439468 NUTM2FA1L443 756 aa8.39□□□□□ -1.07
VPS41-207ENST00000439468 SMYD5Q6GMV2 418 aa8.39□□□□□ -1.07
VPS41-207ENST00000439468 CERKQ8TCT0 537 aa8.39□□□□□ -1.07
VPS41-207ENST00000439468 PACS2Q86VP3 889 aa8.38□□□□□ -1.07
VPS41-207ENST00000439468 CDCA7LQ96GN5 454 aa8.38□□□□□ -1.07
VPS41-207ENST00000439468 SEPT9Q9UHD8 586 aaPredicted RBP8.38□□□□□ -1.07
VPS41-207ENST00000439468 TESPA1A2RU30 521 aaPredicted RBP8.37□□□□□ -1.07
VPS41-207ENST00000439468 BHMG1C9JSJ3 638 aaPredicted RBP8.37□□□□□ -1.07
VPS41-207ENST00000439468 PRSS12P56730 875 aa8.37□□□□□ -1.07
VPS41-207ENST00000439468 WNT2BQ93097 391 aa8.37□□□□□ -1.07
VPS41-207ENST00000439468 TSKSQ9UJT2 592 aa8.36□□□□□ -1.07
VPS41-207ENST00000439468 ONECUT3O60422 494 aaPredicted RBP8.35□□□□□ -1.07
VPS41-207ENST00000439468 TULP1O00294 542 aaPredicted RBP8.34□□□□□ -1.07
VPS41-207ENST00000439468 PTPN5P54829 565 aa8.34□□□□□ -1.07
VPS41-207ENST00000439468 RBM26Q5T8P6 1007 aaKnown RBP8.34□□□□□ -1.07
VPS41-207ENST00000439468 ANKK1Q8NFD2 765 aa8.34□□□□□ -1.07
VPS41-207ENST00000439468 NBPF26B4DH59 902 aa8.33□□□□□ -1.08
VPS41-207ENST00000439468 PADI6Q6TGC4 694 aa8.33□□□□□ -1.08
VPS41-207ENST00000439468 LAPTM4BQ86VI4 370 aa8.33□□□□□ -1.08
VPS41-207ENST00000439468 HCSTQ9UBK5 93 aa8.33□□□□□ -1.08
VPS41-207ENST00000439468 PNMA3Q9UL41 463 aa8.33□□□□□ -1.08
VPS41-207ENST00000439468 SMAPO00193 183 aa8.32□□□□□ -1.08
VPS41-207ENST00000439468 FAM98CQ17RN3 349 aaKnown RBP8.31□□□□□ -1.08
VPS41-207ENST00000439468 ZFRQ96KR1 1074 aaKnown RBP8.31□□□□□ -1.08
VPS41-207ENST00000439468 NPDC1Q9NQX5 325 aaPredicted RBP8.31□□□□□ -1.08
VPS41-207ENST00000439468 RBM27Q9P2N5 1060 aaKnown RBP8.31□□□□□ -1.08
VPS41-207ENST00000439468 FAM198AQ9UFP1 575 aa8.31□□□□□ -1.08
VPS41-207ENST00000439468 FCHSD2O94868 740 aa8.3□□□□□ -1.08
VPS41-207ENST00000439468 PTGDRQ13258 359 aa8.3□□□□□ -1.08
VPS41-207ENST00000439468 THSD4Q6ZMP0 1018 aa8.3□□□□□ -1.08
VPS41-207ENST00000439468 NUDT18Q6ZVK8 323 aa8.3□□□□□ -1.08
VPS41-207ENST00000439468 TATDN2Q93075 761 aa8.3□□□□□ -1.08
VPS41-207ENST00000439468 BCAMP50895 628 aa8.29□□□□□ -1.08
VPS41-207ENST00000439468 GPIHBP1Q8IV16 184 aa8.28□□□□□ -1.08
VPS41-207ENST00000439468 LRCH3Q96II8 777 aa8.28□□□□□ -1.08
VPS41-207ENST00000439468 RNF40O75150 1001 aa8.27□□□□□ -1.09
VPS41-207ENST00000439468 C3orf80F5H4A9 247 aa8.26□□□□□ -1.09
VPS41-207ENST00000439468 HDGFP51858 240 aaKnown RBP8.26□□□□□ -1.09
VPS41-207ENST00000439468 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.26□□□□□ -1.09
VPS41-207ENST00000439468 SOWAHBA6NEL2 793 aa8.25□□□□□ -1.09
VPS41-207ENST00000439468 BCANQ96GW7 911 aa8.25□□□□□ -1.09
VPS41-207ENST00000439468 HIC1Q14526 733 aa8.24□□□□□ -1.09
VPS41-207ENST00000439468 SAMD7Q7Z3H4 446 aa8.24□□□□□ -1.09
VPS41-207ENST00000439468 FAM161AQ3B820 660 aa8.23□□□□□ -1.09
VPS41-207ENST00000439468 TTC13Q8NBP0 860 aa8.23□□□□□ -1.09
VPS41-207ENST00000439468 HPS5Q9UPZ3 1129 aa8.23□□□□□ -1.09
VPS41-207ENST00000439468 RBM46Q8TBY0 533 aaKnown RBP8.22□□□□□ -1.09
VPS41-207ENST00000439468 GNPATO15228 680 aa8.21□□□□□ -1.1
VPS41-207ENST00000439468 PRKCSHP14314 528 aaPredicted RBP8.2□□□□□ -1.1
VPS41-207ENST00000439468 SLC4A3P48751 1232 aa8.2□□□□□ -1.1
VPS41-207ENST00000439468 PPP4CP60510 307 aa8.2□□□□□ -1.1
VPS41-207ENST00000439468 WBP1LQ9NX94 342 aa8.2□□□□□ -1.1
VPS41-207ENST00000439468 PLA2G2EQ9NZK7 142 aa8.2□□□□□ -1.1
VPS41-207ENST00000439468 TSR3Q9UJK0 312 aaKnown RBP8.2□□□□□ -1.1
VPS41-207ENST00000439468 ADGRG1Q9Y653 693 aa8.2□□□□□ -1.1
VPS41-207ENST00000439468 FECHP22830 423 aa8.19□□□□□ -1.1
VPS41-207ENST00000439468 SWT1Q5T5J6 900 aaKnown RBP8.19□□□□□ -1.1
VPS41-207ENST00000439468 EYA1Q99502 592 aa8.19□□□□□ -1.1
VPS41-207ENST00000439468 GPR37O15354 613 aa8.18□□□□□ -1.1
VPS41-207ENST00000439468 DNAJB2P25686 324 aa8.18□□□□□ -1.1
VPS41-207ENST00000439468 OATP04181 439 aa8.17□□□□□ -1.1
VPS41-207ENST00000439468 LMOD2Q6P5Q4 547 aa8.17□□□□□ -1.1
VPS41-207ENST00000439468 SLF2Q8IX21 1173 aa8.17□□□□□ -1.1
VPS41-207ENST00000439468 RCCD1A6NED2 376 aa8.16□□□□□ -1.1
VPS41-207ENST00000439468 NYAP1Q6ZVC0 841 aa8.15□□□□□ -1.1
VPS41-207ENST00000439468 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.15□□□□□ -1.1
VPS41-207ENST00000439468 NECTIN2Q92692 538 aa8.14□□□□□ -1.11
VPS41-207ENST00000439468 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms