RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 EHBP1L1Q8N3D4 1523 aa15.81■□□□□ 0.12
TCOF1-205ENST00000439160 MIA2Q96PC5 1412 aa15.8■□□□□ 0.12
TCOF1-205ENST00000439160 NGDNQ8NEJ9 315 aaKnown RBP15.8■□□□□ 0.12
TCOF1-205ENST00000439160 RRP7AQ9Y3A4 280 aaKnown RBP15.79■□□□□ 0.12
TCOF1-205ENST00000439160 CCDC7Q96M83 1385 aa15.79■□□□□ 0.12
TCOF1-205ENST00000439160 HFM1A2PYH4 1435 aa15.79■□□□□ 0.12
TCOF1-205ENST00000439160 WASHC2AQ641Q2 1341 aa15.78■□□□□ 0.12
TCOF1-205ENST00000439160 EPRSP07814 1512 aaKnown RBP15.78■□□□□ 0.12
TCOF1-205ENST00000439160 ANP32BQ92688 251 aaKnown RBP15.78■□□□□ 0.12
TCOF1-205ENST00000439160 C9orf84Q5VXU9 1444 aa15.77■□□□□ 0.12
TCOF1-205ENST00000439160 CHMP4BQ9H444 224 aaKnown RBP15.77■□□□□ 0.11
TCOF1-205ENST00000439160 EVC2Q86UK5 1308 aa15.77■□□□□ 0.11
TCOF1-205ENST00000439160 NBPF8Q3BBV2 869 aa15.76■□□□□ 0.11
TCOF1-205ENST00000439160 TMEM132EQ6IEE7 984 aa15.76■□□□□ 0.11
TCOF1-205ENST00000439160 CLUAP1Q96AJ1 413 aa15.76■□□□□ 0.11
TCOF1-205ENST00000439160 ZNF608Q9ULD9 1512 aaPredicted RBP15.76■□□□□ 0.11
TCOF1-205ENST00000439160 NBPF1Q3BBV0 1214 aa15.75■□□□□ 0.11
TCOF1-205ENST00000439160 HECW1Q76N89 1606 aa15.74■□□□□ 0.11
TCOF1-205ENST00000439160 IQGAP2Q13576 1575 aa15.74■□□□□ 0.11
TCOF1-205ENST00000439160 PCF11O94913 1555 aaKnown RBP15.74■□□□□ 0.11
TCOF1-205ENST00000439160 PDE3BQ13370 1112 aa15.74■□□□□ 0.11
TCOF1-205ENST00000439160 ERICH6BQ5W0A0 696 aa15.74■□□□□ 0.11
TCOF1-205ENST00000439160 PLB1Q6P1J6 1458 aa15.74■□□□□ 0.11
TCOF1-205ENST00000439160 CFAP70Q5T0N1 1121 aa15.74■□□□□ 0.11
TCOF1-205ENST00000439160 SCAPERQ9BY12 1400 aa15.73■□□□□ 0.11
TCOF1-205ENST00000439160 CGNL1Q0VF96 1302 aa15.73■□□□□ 0.11
TCOF1-205ENST00000439160 DAPK1P53355 1430 aa15.72■□□□□ 0.11
TCOF1-205ENST00000439160 IPO8O15397 1037 aaKnown RBP15.72■□□□□ 0.11
TCOF1-205ENST00000439160 CENPJQ9HC77 1338 aaPredicted RBP15.72■□□□□ 0.11
TCOF1-205ENST00000439160 OS9Q13438 667 aaPredicted RBP15.72■□□□□ 0.11
TCOF1-205ENST00000439160 LTV1Q96GA3 475 aaPredicted RBP15.72■□□□□ 0.11
TCOF1-205ENST00000439160 NAIPQ13075 1403 aa15.71■□□□□ 0.11
TCOF1-205ENST00000439160 ITPRIPQ8IWB1 547 aa15.71■□□□□ 0.11
TCOF1-205ENST00000439160 APBB1O00213 710 aa15.71■□□□□ 0.11
TCOF1-205ENST00000439160 CASC1Q6TDU7 716 aa15.71■□□□□ 0.11
TCOF1-205ENST00000439160 SMC4Q9NTJ3 1288 aa15.71■□□□□ 0.11
TCOF1-205ENST00000439160 RAPGEF3O95398 923 aa15.71■□□□□ 0.11
TCOF1-205ENST00000439160 CSB-PGBD3P0DP91 1061 aa15.7■□□□□ 0.1
TCOF1-205ENST00000439160 CALD1Q05682 793 aaKnown RBP15.7■□□□□ 0.1
TCOF1-205ENST00000439160 APAF1O14727 1248 aa15.7■□□□□ 0.1
TCOF1-205ENST00000439160 AMPHP49418 695 aa15.7■□□□□ 0.1
TCOF1-205ENST00000439160 GRIN2AQ12879 1464 aa15.7■□□□□ 0.1
TCOF1-205ENST00000439160 ZBED9Q6R2W3 1325 aa15.7■□□□□ 0.1
TCOF1-205ENST00000439160 KIAA1107Q9UPP5 1409 aa15.69■□□□□ 0.1
TCOF1-205ENST00000439160 PLIN1O60240 522 aa15.69■□□□□ 0.1
TCOF1-205ENST00000439160 BIVM-ERCC5R4GMW8 1640 aa15.68■□□□□ 0.1
TCOF1-205ENST00000439160 STAC3Q96MF2 364 aa15.68■□□□□ 0.1
TCOF1-205ENST00000439160 BCL2L13Q9BXK5 485 aa15.68■□□□□ 0.1
TCOF1-205ENST00000439160 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.68■□□□□ 0.1
TCOF1-205ENST00000439160 CUL7Q14999 1698 aa15.68■□□□□ 0.1
TCOF1-205ENST00000439160 SUPT6HQ7KZ85 1726 aaKnown RBP15.68■□□□□ 0.1
TCOF1-205ENST00000439160 ARHGEF11O15085 1522 aa15.67■□□□□ 0.1
TCOF1-205ENST00000439160 NOP58Q9Y2X3 529 aaKnown RBP15.67■□□□□ 0.1
TCOF1-205ENST00000439160 CNTLNQ9NXG0 1405 aa15.66■□□□□ 0.1
TCOF1-205ENST00000439160 ELL2O00472 640 aaPredicted RBP15.66■□□□□ 0.1
TCOF1-205ENST00000439160 COG3Q96JB2 828 aa15.66■□□□□ 0.1
TCOF1-205ENST00000439160 CABP2Q9NPB3 220 aa15.64■□□□□ 0.09
TCOF1-205ENST00000439160 RWDD1Q9H446 243 aaPredicted RBP15.63■□□□□ 0.09
TCOF1-205ENST00000439160 MAGI1Q96QZ7 1491 aaPredicted RBP15.63■□□□□ 0.09
TCOF1-205ENST00000439160 RTN4Q9NQC3 1192 aaKnown RBP15.63■□□□□ 0.09
TCOF1-205ENST00000439160 PLEKHH2Q8IVE3 1493 aa15.62■□□□□ 0.09
TCOF1-205ENST00000439160 GGNBP2Q9H3C7 697 aa15.62■□□□□ 0.09
TCOF1-205ENST00000439160 TPRNQ4KMQ1 711 aa15.61■□□□□ 0.09
TCOF1-205ENST00000439160 STK31Q9BXU1 1019 aa15.61■□□□□ 0.09
TCOF1-205ENST00000439160 NCLP19338 710 aaKnown RBP15.6■□□□□ 0.09
TCOF1-205ENST00000439160 EXOC6Q8TAG9 804 aa15.6■□□□□ 0.09
TCOF1-205ENST00000439160 GOLGA6L22H0YM25 854 aa15.6■□□□□ 0.09
TCOF1-205ENST00000439160 ABCC5O15440 1437 aa15.6■□□□□ 0.09
TCOF1-205ENST00000439160 WDR97A6NE52 1622 aa15.6■□□□□ 0.09
TCOF1-205ENST00000439160 TCERG1O14776 1098 aaKnown RBP15.6■□□□□ 0.09
TCOF1-205ENST00000439160 ZNF330Q9Y3S2 320 aaPredicted RBP15.6■□□□□ 0.09
TCOF1-205ENST00000439160 SLC4A10Q6U841 1118 aa15.59■□□□□ 0.09
TCOF1-205ENST00000439160 ROCK1Q13464 1354 aa15.59■□□□□ 0.09
TCOF1-205ENST00000439160 LMOD3Q0VAK6 560 aa15.59■□□□□ 0.09
TCOF1-205ENST00000439160 E9PSI1 815 aa15.58■□□□□ 0.09
TCOF1-205ENST00000439160 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.58■□□□□ 0.09
TCOF1-205ENST00000439160 RRP1P56182 461 aaKnown RBP15.58■□□□□ 0.08
TCOF1-205ENST00000439160 DEKP35659 375 aaKnown RBP15.58■□□□□ 0.08
TCOF1-205ENST00000439160 MAP3K1Q13233 1512 aa15.58■□□□□ 0.08
TCOF1-205ENST00000439160 NPHP1O15259 732 aa15.58■□□□□ 0.08
TCOF1-205ENST00000439160 DIAPH1O60610 1272 aaKnown RBP15.58■□□□□ 0.08
TCOF1-205ENST00000439160 SPRYD3Q8NCJ5 442 aa15.58■□□□□ 0.08
TCOF1-205ENST00000439160 HSP90AB1P08238 724 aaKnown RBP15.57■□□□□ 0.08
TCOF1-205ENST00000439160 KCNJ4P48050 445 aa15.57■□□□□ 0.08
TCOF1-205ENST00000439160 ADAMTS8Q9UP79 889 aa15.56■□□□□ 0.08
TCOF1-205ENST00000439160 CAMSAP2Q08AD1 1489 aa15.56■□□□□ 0.08
TCOF1-205ENST00000439160 PMFBP1Q8TBY8 1022 aa15.56■□□□□ 0.08
TCOF1-205ENST00000439160 SLC12A5Q9H2X9 1139 aa15.55■□□□□ 0.08
TCOF1-205ENST00000439160 CRBNQ96SW2 442 aa15.55■□□□□ 0.08
TCOF1-205ENST00000439160 COG6Q9Y2V7 657 aa15.55■□□□□ 0.08
TCOF1-205ENST00000439160 PTPN23Q9H3S7 1636 aa15.54■□□□□ 0.08
TCOF1-205ENST00000439160 MTHFSP49914 203 aa15.54■□□□□ 0.08
TCOF1-205ENST00000439160 CCDC141Q6ZP82 1450 aa15.53■□□□□ 0.08
TCOF1-205ENST00000439160 PRAM1Q96QH2 718 aa15.53■□□□□ 0.08
TCOF1-205ENST00000439160 ANKRD30BQ9BXX2 1392 aa15.53■□□□□ 0.08
TCOF1-205ENST00000439160 RIPK4P57078 832 aa15.53■□□□□ 0.08
TCOF1-205ENST00000439160 CCDC184Q52MB2 194 aa15.53■□□□□ 0.08
TCOF1-205ENST00000439160 TAOK2Q9UL54 1235 aa15.53■□□□□ 0.08
TCOF1-205ENST00000439160 HMOX1P09601 288 aa15.52■□□□□ 0.08
TCOF1-205ENST00000439160 NCOA1Q15788 1441 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms