RNA–Protein interactions for RNA: ENST00000430328.6

RIF1-204, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,992 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-204ENST00000430328 CCDC173Q0VFZ6 552 aa20.24■□□□□ 0.83
RIF1-204ENST00000430328 MYO6Q9UM54 1294 aa20.24■□□□□ 0.83
RIF1-204ENST00000430328 DYDC1Q8WWB3 177 aa20.24■□□□□ 0.83
RIF1-204ENST00000430328 MNS1Q8NEH6 495 aa20.24■□□□□ 0.83
RIF1-204ENST00000430328 CCDC47Q96A33 483 aaKnown RBP20.24■□□□□ 0.83
RIF1-204ENST00000430328 CT47A1Q5JQC4 288 aaPredicted RBP20.23■□□□□ 0.83
RIF1-204ENST00000430328 NAP1L1P55209 391 aaKnown RBP20.22■□□□□ 0.83
RIF1-204ENST00000430328 TOMM22Q9NS69 142 aa20.22■□□□□ 0.83
RIF1-204ENST00000430328 ERCC4Q92889 916 aaPredicted RBP20.21■□□□□ 0.83
RIF1-204ENST00000430328 PABPN1Q86U42 306 aaKnown RBP eCLIP20.21■□□□□ 0.83
RIF1-204ENST00000430328 TMF1P82094 1093 aa20.2■□□□□ 0.82
RIF1-204ENST00000430328 RCAN3Q9UKA8 241 aa20.2■□□□□ 0.82
RIF1-204ENST00000430328 PODXL2Q9NZ53 605 aa20.2■□□□□ 0.82
RIF1-204ENST00000430328 LEKR1Q6ZMV7 388 aa20.19■□□□□ 0.82
RIF1-204ENST00000430328 TSPYL1Q9H0U9 437 aa20.19■□□□□ 0.82
RIF1-204ENST00000430328 FAM43AQ8N2R8 423 aa20.19■□□□□ 0.82
RIF1-204ENST00000430328 INCENPQ9NQS7 918 aa20.18■□□□□ 0.82
RIF1-204ENST00000430328 DIAPH3Q9NSV4 1193 aa20.18■□□□□ 0.82
RIF1-204ENST00000430328 ZNF330Q9Y3S2 320 aaPredicted RBP20.18■□□□□ 0.82
RIF1-204ENST00000430328 PKNOX2Q96KN3 472 aa20.17■□□□□ 0.82
RIF1-204ENST00000430328 MORC1Q86VD1 984 aa20.17■□□□□ 0.82
RIF1-204ENST00000430328 HSP90AB2PQ58FF8 381 aa20.16■□□□□ 0.82
RIF1-204ENST00000430328 SOX12O15370 315 aa20.16■□□□□ 0.82
RIF1-204ENST00000430328 GOLGA6L7A0A1B0GV03 622 aa20.15■□□□□ 0.82
RIF1-204ENST00000430328 MCTP1Q6DN14 999 aa20.15■□□□□ 0.82
RIF1-204ENST00000430328 NEFHP12036 1026 aa20.14■□□□□ 0.82
RIF1-204ENST00000430328 STK31Q9BXU1 1019 aa20.14■□□□□ 0.81
RIF1-204ENST00000430328 FRAT2O75474 233 aaPredicted RBP20.14■□□□□ 0.81
RIF1-204ENST00000430328 IFT57Q9NWB7 429 aa20.14■□□□□ 0.81
RIF1-204ENST00000430328 RSF1Q96T23 1441 aaPredicted RBP20.13■□□□□ 0.81
RIF1-204ENST00000430328 FOXD4L6Q3SYB3 417 aaPredicted RBP20.12■□□□□ 0.81
RIF1-204ENST00000430328 FOXD4L3Q6VB84 417 aaPredicted RBP20.12■□□□□ 0.81
RIF1-204ENST00000430328 SPAG9O60271 1321 aaKnown RBP20.12■□□□□ 0.81
RIF1-204ENST00000430328 SYNE3Q6ZMZ3 975 aa20.12■□□□□ 0.81
RIF1-204ENST00000430328 TRIM29Q14134 588 aa20.12■□□□□ 0.81
RIF1-204ENST00000430328 CAGE1Q8TC20 777 aa20.12■□□□□ 0.81
RIF1-204ENST00000430328 CPLX2Q6PUV4 134 aaKnown RBP20.11■□□□□ 0.81
RIF1-204ENST00000430328 SRPK2P78362 688 aaKnown RBP20.1■□□□□ 0.81
RIF1-204ENST00000430328 CCDC180Q9P1Z9 1646 aa20.1■□□□□ 0.81
RIF1-204ENST00000430328 KIAA0754O94854 1291 aa20.1■□□□□ 0.81
RIF1-204ENST00000430328 ZFYVE27Q5T4F4 411 aa20.1■□□□□ 0.81
RIF1-204ENST00000430328 TAF3Q5VWG9 929 aa20.08■□□□□ 0.81
RIF1-204ENST00000430328 SASS6Q6UVJ0 657 aa20.08■□□□□ 0.8
RIF1-204ENST00000430328 CCER2I3L3R5 266 aa20.08■□□□□ 0.8
RIF1-204ENST00000430328 USP8P40818 1118 aa20.08■□□□□ 0.8
RIF1-204ENST00000430328 EPS15P42566 896 aa20.08■□□□□ 0.8
RIF1-204ENST00000430328 SMC4Q9NTJ3 1288 aa20.07■□□□□ 0.8
RIF1-204ENST00000430328 KTN1Q86UP2 1357 aaKnown RBP20.05■□□□□ 0.8
RIF1-204ENST00000430328 AXDND1Q5T1B0 1012 aaPredicted RBP20.05■□□□□ 0.8
RIF1-204ENST00000430328 CLASRPQ8N2M8 674 aaKnown RBP20.05■□□□□ 0.8
RIF1-204ENST00000430328 CCDC43Q96MW1 224 aaKnown RBP20.05■□□□□ 0.8
RIF1-204ENST00000430328 SEPT7Q16181 437 aaKnown RBP20.05■□□□□ 0.8
RIF1-204ENST00000430328 LRRFIP1Q32MZ4 808 aaKnown RBP20.05■□□□□ 0.8
RIF1-204ENST00000430328 ANKRD18AQ8IVF6 992 aa20.04■□□□□ 0.8
RIF1-204ENST00000430328 DEF6Q9H4E7 631 aa20.04■□□□□ 0.8
RIF1-204ENST00000430328 CT47B1P0C2W7 299 aaPredicted RBP20.04■□□□□ 0.8
RIF1-204ENST00000430328 OFD1O75665 1012 aa20.04■□□□□ 0.8
RIF1-204ENST00000430328 GOLGA6L10A6NI86 522 aa20.03■□□□□ 0.8
RIF1-204ENST00000430328 BICD2Q8TD16 824 aa20.03■□□□□ 0.8
RIF1-204ENST00000430328 KCNH8Q96L42 1107 aa20.03■□□□□ 0.8
RIF1-204ENST00000430328 SKIDA1Q1XH10 827 aa20.03■□□□□ 0.8
RIF1-204ENST00000430328 CTDP1Q9Y5B0 961 aaPredicted RBP20.02■□□□□ 0.8
RIF1-204ENST00000430328 ERLIN2O94905 339 aa20.02■□□□□ 0.8
RIF1-204ENST00000430328 SLC4A10Q6U841 1118 aa20.02■□□□□ 0.8
RIF1-204ENST00000430328 AMOTL1Q8IY63 956 aa20.01■□□□□ 0.79
RIF1-204ENST00000430328 NAT10Q9H0A0 1025 aaKnown RBP20.01■□□□□ 0.79
RIF1-204ENST00000430328 R3HCC1Q9Y3T6 440 aaKnown RBP20.01■□□□□ 0.79
RIF1-204ENST00000430328 RILPL2Q969X0 211 aa20.01■□□□□ 0.79
RIF1-204ENST00000430328 EZRP15311 586 aaKnown RBP20■□□□□ 0.79
RIF1-204ENST00000430328 HDGFP51858 240 aaKnown RBP20■□□□□ 0.79
RIF1-204ENST00000430328 U2AF1L5P0DN76 240 aaPredicted RBP19.99■□□□□ 0.79
RIF1-204ENST00000430328 U2AF1Q01081 240 aaKnown RBP eCLIP19.99■□□□□ 0.792e-6■■■■□ 20.3
RIF1-204ENST00000430328 ENOX2Q16206 610 aaKnown RBP19.99■□□□□ 0.79
RIF1-204ENST00000430328 ANKRD62A6NC57 917 aa19.98■□□□□ 0.79
RIF1-204ENST00000430328 TRIM34Q9BYJ4 488 aa19.98■□□□□ 0.79
RIF1-204ENST00000430328 PLEKHD1A6NEE1 506 aa19.98■□□□□ 0.79
RIF1-204ENST00000430328 HDGFL2Q7Z4V5 671 aaPredicted RBP19.97■□□□□ 0.79
RIF1-204ENST00000430328 BCL11BQ9C0K0 894 aaPredicted RBP19.97■□□□□ 0.79
RIF1-204ENST00000430328 CCDC39Q9UFE4 941 aa19.97■□□□□ 0.79
RIF1-204ENST00000430328 TSHZ2Q9NRE2 1034 aa19.96■□□□□ 0.79
RIF1-204ENST00000430328 GIMAP7Q8NHV1 300 aa19.96■□□□□ 0.79
RIF1-204ENST00000430328 PAF1Q8N7H5 531 aa19.96■□□□□ 0.79
RIF1-204ENST00000430328 OLFM4Q6UX06 510 aa19.96■□□□□ 0.79
RIF1-204ENST00000430328 CPLX1O14810 134 aa19.95■□□□□ 0.78
RIF1-204ENST00000430328 NOL10Q9BSC4 688 aaKnown RBP19.94■□□□□ 0.78
RIF1-204ENST00000430328 CCP110O43303 1012 aa19.94■□□□□ 0.78
RIF1-204ENST00000430328 CSB-PGBD3P0DP91 1061 aa19.94■□□□□ 0.78
RIF1-204ENST00000430328 GTF2E1P29083 439 aaPredicted RBP19.94■□□□□ 0.78
RIF1-204ENST00000430328 PDILTQ8N807 584 aa19.94■□□□□ 0.78
RIF1-204ENST00000430328 CLIP1P30622 1438 aa19.93■□□□□ 0.78
RIF1-204ENST00000430328 CGNL1Q0VF96 1302 aa19.93■□□□□ 0.78
RIF1-204ENST00000430328 NF2P35240 595 aa19.93■□□□□ 0.78
RIF1-204ENST00000430328 FAM161AQ3B820 660 aa19.93■□□□□ 0.78
RIF1-204ENST00000430328 RUFY2Q8WXA3 655 aa19.93■□□□□ 0.78
RIF1-204ENST00000430328 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.93■□□□□ 0.78
RIF1-204ENST00000430328 RAD21O60216 631 aa19.93■□□□□ 0.78
RIF1-204ENST00000430328 FBXW7Q969H0 707 aa19.92■□□□□ 0.78
RIF1-204ENST00000430328 ZKSCAN1P17029 563 aaPredicted RBP19.92■□□□□ 0.78
RIF1-204ENST00000430328 TTLL5Q6EMB2 1281 aa19.92■□□□□ 0.78
RIF1-204ENST00000430328 CHMP7Q8WUX9 453 aaPredicted RBP19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms