RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 MAST1Q9Y2H9 1570 aa19.59■□□□□ 0.73
LIG1-202ENST00000427526 AFAP1Q8N556 730 aa19.59■□□□□ 0.73
LIG1-202ENST00000427526 KDM5DQ9BY66 1539 aa19.59■□□□□ 0.73
LIG1-202ENST00000427526 USP47Q96K76 1375 aa19.58■□□□□ 0.73
LIG1-202ENST00000427526 IRX6P78412 446 aaPredicted RBP19.58■□□□□ 0.73
LIG1-202ENST00000427526 UHRF1BP1Q6BDS2 1440 aa19.58■□□□□ 0.73
LIG1-202ENST00000427526 KDM5CP41229 1560 aa19.57■□□□□ 0.72
LIG1-202ENST00000427526 ASXL2Q76L83 1435 aa19.57■□□□□ 0.72
LIG1-202ENST00000427526 ABCC1P33527 1531 aa19.56■□□□□ 0.72
LIG1-202ENST00000427526 ARID4BQ4LE39 1312 aaPredicted RBP19.56■□□□□ 0.72
LIG1-202ENST00000427526 ZNF326Q5BKZ1 582 aaKnown RBP19.55■□□□□ 0.72
LIG1-202ENST00000427526 FAM135AQ9P2D6 1515 aa19.54■□□□□ 0.72
LIG1-202ENST00000427526 ERICH6Q7L0X2 663 aa19.54■□□□□ 0.72
LIG1-202ENST00000427526 NPM1P06748 294 aaKnown RBP eCLIP19.53■□□□□ 0.72
LIG1-202ENST00000427526 RALGAPBQ86X10 1494 aa19.52■□□□□ 0.72
LIG1-202ENST00000427526 SPAG9O60271 1321 aaKnown RBP19.52■□□□□ 0.72
LIG1-202ENST00000427526 PLXNC1O60486 1568 aa19.52■□□□□ 0.72
LIG1-202ENST00000427526 PPP4R2Q9NY27 417 aa19.51■□□□□ 0.71
LIG1-202ENST00000427526 FANCAO15360 1455 aa19.5■□□□□ 0.71
LIG1-202ENST00000427526 ARAP3Q8WWN8 1544 aa19.5■□□□□ 0.71
LIG1-202ENST00000427526 DUOX2Q9NRD8 1548 aa19.5■□□□□ 0.71
LIG1-202ENST00000427526 KDM2AQ9Y2K7 1162 aa19.48■□□□□ 0.71
LIG1-202ENST00000427526 ABCA9Q8IUA7 1624 aa19.47■□□□□ 0.71
LIG1-202ENST00000427526 UNC13BO14795 1591 aa19.46■□□□□ 0.71
LIG1-202ENST00000427526 ERBINQ96RT1 1412 aa19.46■□□□□ 0.71
LIG1-202ENST00000427526 ROCK2O75116 1388 aaKnown RBP19.46■□□□□ 0.71
LIG1-202ENST00000427526 SCAPERQ9BY12 1400 aa19.45■□□□□ 0.7
LIG1-202ENST00000427526 DCAF11Q8TEB1 546 aa19.45■□□□□ 0.7
LIG1-202ENST00000427526 MYT1LQ9UL68 1186 aa19.44■□□□□ 0.7
LIG1-202ENST00000427526 CARD11Q9BXL7 1154 aa19.44■□□□□ 0.7
LIG1-202ENST00000427526 PLA2R1Q13018 1463 aa19.43■□□□□ 0.7
LIG1-202ENST00000427526 RTEL1-TNFRSF6BF6WH68 1400 aa19.43■□□□□ 0.7
LIG1-202ENST00000427526 SMG6Q86US8 1419 aaKnown RBP19.43■□□□□ 0.7
LIG1-202ENST00000427526 ADGRL1O94910 1474 aa19.43■□□□□ 0.7
LIG1-202ENST00000427526 POLR3GLQ9BT43 218 aa19.42■□□□□ 0.7
LIG1-202ENST00000427526 RGL3Q3MIN7 710 aa19.41■□□□□ 0.7
LIG1-202ENST00000427526 ZFYVE16Q7Z3T8 1539 aa19.41■□□□□ 0.7
LIG1-202ENST00000427526 CCDC144AA2RUR9 1427 aa19.41■□□□□ 0.7
LIG1-202ENST00000427526 IQGAP3Q86VI3 1631 aa19.4■□□□□ 0.7
LIG1-202ENST00000427526 FANCIQ9NVI1 1328 aa19.4■□□□□ 0.7
LIG1-202ENST00000427526 PNISRQ8TF01 805 aaKnown RBP19.39■□□□□ 0.69
LIG1-202ENST00000427526 MAGI2Q86UL8 1455 aa19.39■□□□□ 0.69
LIG1-202ENST00000427526 ST20-MTHFSA0A0A6YYL1 179 aa19.38■□□□□ 0.69
LIG1-202ENST00000427526 MSH5O43196 834 aa19.37■□□□□ 0.69
LIG1-202ENST00000427526 RNF123Q5XPI4 1314 aa19.36■□□□□ 0.69
LIG1-202ENST00000427526 CD109Q6YHK3 1445 aa19.36■□□□□ 0.69
LIG1-202ENST00000427526 ATP7AQ04656 1500 aa19.36■□□□□ 0.69
LIG1-202ENST00000427526 CNGB1Q14028 1251 aaPredicted RBP19.35■□□□□ 0.69
LIG1-202ENST00000427526 B4GALNT3Q6L9W6 998 aa19.35■□□□□ 0.69
LIG1-202ENST00000427526 NUDCQ9Y266 331 aa19.35■□□□□ 0.69
LIG1-202ENST00000427526 KIF3BO15066 747 aa19.35■□□□□ 0.69
LIG1-202ENST00000427526 CYB5RLQ6IPT4 315 aa19.35■□□□□ 0.69
LIG1-202ENST00000427526 E9PCH4 1651 aa19.34■□□□□ 0.69
LIG1-202ENST00000427526 KTN1Q86UP2 1357 aaKnown RBP19.33■□□□□ 0.69
LIG1-202ENST00000427526 INO80Q9ULG1 1556 aaPredicted RBP19.33■□□□□ 0.68
LIG1-202ENST00000427526 LRPPRCP42704 1394 aaKnown RBP19.32■□□□□ 0.68
LIG1-202ENST00000427526 TMC1Q8TDI8 760 aa19.32■□□□□ 0.68
LIG1-202ENST00000427526 PRAG1Q86YV5 1406 aa19.32■□□□□ 0.68
LIG1-202ENST00000427526 TRPM1Q7Z4N2 1603 aa19.31■□□□□ 0.68
LIG1-202ENST00000427526 BRD4O60885 1362 aaPredicted RBP19.3■□□□□ 0.68
LIG1-202ENST00000427526 RALBP1Q15311 655 aa19.3■□□□□ 0.68
LIG1-202ENST00000427526 ATP10AO60312 1499 aa19.29■□□□□ 0.68
LIG1-202ENST00000427526 MYBBP1AQ9BQG0 1328 aaKnown RBP19.29■□□□□ 0.68
LIG1-202ENST00000427526 A2MP01023 1474 aa19.28■□□□□ 0.68
LIG1-202ENST00000427526 NBPF1Q3BBV0 1214 aa19.27■□□□□ 0.68
LIG1-202ENST00000427526 ZNF518AQ6AHZ1 1483 aa19.27■□□□□ 0.67
LIG1-202ENST00000427526 GPRASP1Q5JY77 1395 aa19.26■□□□□ 0.67
LIG1-202ENST00000427526 KANK1Q14678 1352 aa19.25■□□□□ 0.67
LIG1-202ENST00000427526 KIDINS220Q9ULH0 1771 aa19.24■□□□□ 0.67
LIG1-202ENST00000427526 RAPGEF3O95398 923 aa19.24■□□□□ 0.67
LIG1-202ENST00000427526 DEPDC5O75140 1603 aa19.23■□□□□ 0.67
LIG1-202ENST00000427526 LAMC1P11047 1609 aa19.23■□□□□ 0.67
LIG1-202ENST00000427526 POGZQ7Z3K3 1410 aa19.23■□□□□ 0.67
LIG1-202ENST00000427526 PARD3Q8TEW0 1356 aa19.22■□□□□ 0.67
LIG1-202ENST00000427526 PER1O15534 1290 aaPredicted RBP19.22■□□□□ 0.67
LIG1-202ENST00000427526 PRDM15P57071 1507 aaPredicted RBP19.2■□□□□ 0.66
LIG1-202ENST00000427526 PTPRTO14522 1441 aa19.2■□□□□ 0.66
LIG1-202ENST00000427526 VWDEQ8N2E2 1590 aa19.2■□□□□ 0.66
LIG1-202ENST00000427526 SENP3-EIF4A1A0A087X0R7 540 aa19.19■□□□□ 0.66
LIG1-202ENST00000427526 TESK2Q96S53 571 aa19.19■□□□□ 0.66
LIG1-202ENST00000427526 NLRP13Q86W25 1043 aa19.18■□□□□ 0.66
LIG1-202ENST00000427526 MROH1Q8NDA8 1641 aa19.18■□□□□ 0.66
LIG1-202ENST00000427526 COL17A1Q9UMD9 1497 aaPredicted RBP19.18■□□□□ 0.66
LIG1-202ENST00000427526 CFAP74Q9C0B2 1584 aa19.17■□□□□ 0.66
LIG1-202ENST00000427526 TET3O43151 1660 aa19.17■□□□□ 0.66
LIG1-202ENST00000427526 TRPM2O94759 1503 aa19.17■□□□□ 0.66
LIG1-202ENST00000427526 GGT6Q6P531 493 aa19.17■□□□□ 0.66
LIG1-202ENST00000427526 MLH3Q9UHC1 1453 aa19.16■□□□□ 0.66
LIG1-202ENST00000427526 EIF2AK4Q9P2K8 1649 aaKnown RBP19.16■□□□□ 0.66
LIG1-202ENST00000427526 WASHC2CQ9Y4E1 1318 aa19.16■□□□□ 0.66
LIG1-202ENST00000427526 RIMBP3CA6NJZ7 1639 aa19.15■□□□□ 0.66
LIG1-202ENST00000427526 RIMBP3BA6NNM3 1639 aa19.15■□□□□ 0.66
LIG1-202ENST00000427526 RIMBP3Q9UFD9 1639 aa19.15■□□□□ 0.66
LIG1-202ENST00000427526 NEO1Q92859 1461 aa19.15■□□□□ 0.66
LIG1-202ENST00000427526 CCDC136Q96JN2 1154 aa19.15■□□□□ 0.66
LIG1-202ENST00000427526 DISP3Q9P2K9 1392 aa19.14■□□□□ 0.66
LIG1-202ENST00000427526 CLTCL1P53675 1640 aa19.13■□□□□ 0.65
LIG1-202ENST00000427526 SPHKAPQ2M3C7 1700 aa19.13■□□□□ 0.65
LIG1-202ENST00000427526 FRMPD1Q5SYB0 1578 aa19.12■□□□□ 0.65
LIG1-202ENST00000427526 FAM69CQ0P6D2 419 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms