RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 ADGRL2O95490 1459 aa16.26■□□□□ 0.19
PTPRN-204ENST00000423636 ADGBQ8N7X0 1667 aa16.24■□□□□ 0.19
PTPRN-204ENST00000423636 SCAPERQ9BY12 1400 aa16.24■□□□□ 0.19
PTPRN-204ENST00000423636 FAM135AQ9P2D6 1515 aa16.24■□□□□ 0.19
PTPRN-204ENST00000423636 ADCY10Q96PN6 1610 aa16.23■□□□□ 0.19
PTPRN-204ENST00000423636 DHX29Q7Z478 1369 aaKnown RBP16.22■□□□□ 0.19
PTPRN-204ENST00000423636 PANK3Q9H999 370 aa16.22■□□□□ 0.19
PTPRN-204ENST00000423636 CROCC2H7BZ55 1655 aa16.21■□□□□ 0.19
PTPRN-204ENST00000423636 PLA2R1Q13018 1463 aa16.21■□□□□ 0.19
PTPRN-204ENST00000423636 RAPGEF3O95398 923 aa16.21■□□□□ 0.18
PTPRN-204ENST00000423636 ABCC2Q92887 1545 aa16.19■□□□□ 0.18
PTPRN-204ENST00000423636 NPM1P06748 294 aaKnown RBP eCLIP16.19■□□□□ 0.18
PTPRN-204ENST00000423636 DISP3Q9P2K9 1392 aa16.18■□□□□ 0.18
PTPRN-204ENST00000423636 RSPH4AQ5TD94 716 aa16.18■□□□□ 0.18
PTPRN-204ENST00000423636 CYB5RLQ6IPT4 315 aa16.18■□□□□ 0.18
PTPRN-204ENST00000423636 CFAP65Q6ZU64 1925 aaKnown RBP16.18■□□□□ 0.18
PTPRN-204ENST00000423636 SAFB2Q14151 953 aaKnown RBP eCLIP16.17■□□□□ 0.18
PTPRN-204ENST00000423636 TNNT2P45379 298 aaPredicted RBP16.17■□□□□ 0.18
PTPRN-204ENST00000423636 CFAP70Q5T0N1 1121 aa16.17■□□□□ 0.18
PTPRN-204ENST00000423636 PLCH2O75038 1416 aa16.15■□□□□ 0.18
PTPRN-204ENST00000423636 PREX2Q70Z35 1606 aa16.15■□□□□ 0.18
PTPRN-204ENST00000423636 CDCA7LQ96GN5 454 aa16.15■□□□□ 0.18
PTPRN-204ENST00000423636 PNISRQ8TF01 805 aaKnown RBP16.14■□□□□ 0.17
PTPRN-204ENST00000423636 OSCARQ8IYS5 282 aa16.14■□□□□ 0.17
PTPRN-204ENST00000423636 RBM19Q9Y4C8 960 aaKnown RBP16.14■□□□□ 0.17
PTPRN-204ENST00000423636 ZCCHC11Q5TAX3 1644 aaKnown RBP16.14■□□□□ 0.17
PTPRN-204ENST00000423636 TMEM132EQ6IEE7 984 aa16.13■□□□□ 0.17
PTPRN-204ENST00000423636 A2MP01023 1474 aa16.13■□□□□ 0.17
PTPRN-204ENST00000423636 SHANK2Q9UPX8 1470 aa16.13■□□□□ 0.17
PTPRN-204ENST00000423636 TESK2Q96S53 571 aa16.12■□□□□ 0.17
PTPRN-204ENST00000423636 KDM5CP41229 1560 aa16.11■□□□□ 0.17
PTPRN-204ENST00000423636 PLIN1O60240 522 aa16.11■□□□□ 0.17
PTPRN-204ENST00000423636 PRAG1Q86YV5 1406 aa16.1■□□□□ 0.17
PTPRN-204ENST00000423636 ZBED9Q6R2W3 1325 aa16.1■□□□□ 0.17
PTPRN-204ENST00000423636 TRAK1Q9UPV9 953 aa16.09■□□□□ 0.17
PTPRN-204ENST00000423636 ADGRF5Q8IZF2 1346 aa16.09■□□□□ 0.17
PTPRN-204ENST00000423636 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
PTPRN-204ENST00000423636 RALGAPBQ86X10 1494 aa16.09■□□□□ 0.17
PTPRN-204ENST00000423636 UGGT1Q9NYU2 1555 aa16.09■□□□□ 0.17
PTPRN-204ENST00000423636 FANCAO15360 1455 aa16.08■□□□□ 0.17
PTPRN-204ENST00000423636 SKAP1Q86WV1 359 aa16.08■□□□□ 0.17
PTPRN-204ENST00000423636 MYO5CQ9NQX4 1742 aa16.08■□□□□ 0.16
PTPRN-204ENST00000423636 CCDC146Q8IYE0 955 aa16.07■□□□□ 0.16
PTPRN-204ENST00000423636 TMF1P82094 1093 aa16.07■□□□□ 0.16
PTPRN-204ENST00000423636 ASXL2Q76L83 1435 aa16.07■□□□□ 0.16
PTPRN-204ENST00000423636 ARHGEF5Q12774 1597 aa16.07■□□□□ 0.16
PTPRN-204ENST00000423636 MLECQ14165 292 aa16.06■□□□□ 0.16
PTPRN-204ENST00000423636 SHROOM2Q13796 1616 aa16.05■□□□□ 0.16
PTPRN-204ENST00000423636 PER1O15534 1290 aaPredicted RBP16.05■□□□□ 0.16
PTPRN-204ENST00000423636 STK26Q9P289 416 aa16.04■□□□□ 0.16
PTPRN-204ENST00000423636 MYBBP1AQ9BQG0 1328 aaKnown RBP16.04■□□□□ 0.16
PTPRN-204ENST00000423636 UHRF1BP1Q6BDS2 1440 aa16.04■□□□□ 0.16
PTPRN-204ENST00000423636 ADGRL1O94910 1474 aa16.04■□□□□ 0.16
PTPRN-204ENST00000423636 KDM5DQ9BY66 1539 aa16.04■□□□□ 0.16
PTPRN-204ENST00000423636 KNSTRNQ9Y448 316 aa16.02■□□□□ 0.16
PTPRN-204ENST00000423636 KTN1Q86UP2 1357 aaKnown RBP16.02■□□□□ 0.16
PTPRN-204ENST00000423636 CLASP1Q7Z460 1538 aa16.01■□□□□ 0.15
PTPRN-204ENST00000423636 NUDCQ9Y266 331 aa16.01■□□□□ 0.15
PTPRN-204ENST00000423636 WASHC2CQ9Y4E1 1318 aa16.01■□□□□ 0.15
PTPRN-204ENST00000423636 WDR7Q9Y4E6 1490 aa16.01■□□□□ 0.15
PTPRN-204ENST00000423636 NEUROD2Q15784 382 aa16.01■□□□□ 0.15
PTPRN-204ENST00000423636 ADAMTS8Q9UP79 889 aa16.01■□□□□ 0.15
PTPRN-204ENST00000423636 ERBINQ96RT1 1412 aa16■□□□□ 0.15
PTPRN-204ENST00000423636 CCDC136Q96JN2 1154 aa16■□□□□ 0.15
PTPRN-204ENST00000423636 PPP4R2Q9NY27 417 aa16■□□□□ 0.15
PTPRN-204ENST00000423636 DUOX2Q9NRD8 1548 aa15.99■□□□□ 0.15
PTPRN-204ENST00000423636 NLRP13Q86W25 1043 aa15.99■□□□□ 0.15
PTPRN-204ENST00000423636 ABCC1P33527 1531 aa15.98■□□□□ 0.15
PTPRN-204ENST00000423636 EXOC6Q8TAG9 804 aa15.97■□□□□ 0.15
PTPRN-204ENST00000423636 RALBP1Q15311 655 aa15.97■□□□□ 0.15
PTPRN-204ENST00000423636 KANK1Q14678 1352 aa15.97■□□□□ 0.15
PTPRN-204ENST00000423636 SLC12A5Q9H2X9 1139 aa15.95■□□□□ 0.14
PTPRN-204ENST00000423636 ATP10AO60312 1499 aa15.95■□□□□ 0.14
PTPRN-204ENST00000423636 CD109Q6YHK3 1445 aa15.94■□□□□ 0.14
PTPRN-204ENST00000423636 FBXO31Q5XUX0 539 aaPredicted RBP15.93■□□□□ 0.14
PTPRN-204ENST00000423636 RRP7AQ9Y3A4 280 aaKnown RBP15.93■□□□□ 0.14
PTPRN-204ENST00000423636 MSH5O43196 834 aa15.92■□□□□ 0.14
PTPRN-204ENST00000423636 TRPM1Q7Z4N2 1603 aa15.92■□□□□ 0.14
PTPRN-204ENST00000423636 WDR43Q15061 677 aaKnown RBP eCLIP15.92■□□□□ 0.14
PTPRN-204ENST00000423636 PPP2R1AP30153 589 aa15.91■□□□□ 0.14
PTPRN-204ENST00000423636 MAST1Q9Y2H9 1570 aa15.91■□□□□ 0.14
PTPRN-204ENST00000423636 ZFYVE16Q7Z3T8 1539 aa15.91■□□□□ 0.14
PTPRN-204ENST00000423636 C20orf194Q5TEA3 1177 aa15.91■□□□□ 0.14
PTPRN-204ENST00000423636 RCAN3Q9UKA8 241 aa15.91■□□□□ 0.14
PTPRN-204ENST00000423636 E9PCH4 1651 aa15.9■□□□□ 0.14
PTPRN-204ENST00000423636 ARID4BQ4LE39 1312 aaPredicted RBP15.9■□□□□ 0.14
PTPRN-204ENST00000423636 FAM69CQ0P6D2 419 aa15.9■□□□□ 0.14
PTPRN-204ENST00000423636 CARD14Q9BXL6 1004 aa15.9■□□□□ 0.14
PTPRN-204ENST00000423636 ATP7AQ04656 1500 aa15.9■□□□□ 0.14
PTPRN-204ENST00000423636 MAGI2Q86UL8 1455 aa15.9■□□□□ 0.14
PTPRN-204ENST00000423636 NPM2Q86SE8 214 aaKnown RBP15.9■□□□□ 0.14
PTPRN-204ENST00000423636 UNC13BO14795 1591 aa15.89■□□□□ 0.13
PTPRN-204ENST00000423636 NOS1P29475 1434 aa15.89■□□□□ 0.13
PTPRN-204ENST00000423636 CABP2Q9NPB3 220 aa15.88■□□□□ 0.13
PTPRN-204ENST00000423636 IQGAP3Q86VI3 1631 aa15.88■□□□□ 0.13
PTPRN-204ENST00000423636 BRD4O60885 1362 aaPredicted RBP15.88■□□□□ 0.13
PTPRN-204ENST00000423636 UHRF1BP1LA0JNW5 1464 aa15.88■□□□□ 0.13
PTPRN-204ENST00000423636 PARD3Q8TEW0 1356 aa15.87■□□□□ 0.13
PTPRN-204ENST00000423636 FBLN1P23142 703 aa15.87■□□□□ 0.13
PTPRN-204ENST00000423636 AMER1Q5JTC6 1135 aaPredicted RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms