RNA–Protein interactions for RNA: ENST00000423572.6

SCN5A-205, Transcript of sodium voltage-gated channel alpha subunit 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN5A, Length 8,362 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN5A-205ENST00000423572 U2AF1Q01081 240 aaKnown RBP eCLIP13.82□□□□□ -0.2
SCN5A-205ENST00000423572 PDS5BQ9NTI5 1447 aa13.81□□□□□ -0.2
SCN5A-205ENST00000423572 PPM1FP49593 454 aaPredicted RBP13.81□□□□□ -0.2
SCN5A-205ENST00000423572 SPDYE4A6NLX3 237 aa13.81□□□□□ -0.2
SCN5A-205ENST00000423572 NUTM2BA6NNL0 878 aaPredicted RBP13.81□□□□□ -0.2
SCN5A-205ENST00000423572 NUTM2EB1AL46 878 aaPredicted RBP13.81□□□□□ -0.2
SCN5A-205ENST00000423572 TPM2P07951 284 aa13.81□□□□□ -0.2
SCN5A-205ENST00000423572 TPD52L1Q16890 204 aaPredicted RBP13.81□□□□□ -0.2
SCN5A-205ENST00000423572 SYNE3Q6ZMZ3 975 aa13.81□□□□□ -0.2
SCN5A-205ENST00000423572 NUTM2AQ8IVF1 878 aaPredicted RBP13.81□□□□□ -0.2
SCN5A-205ENST00000423572 IKQ13123 557 aaPredicted RBP13.79□□□□□ -0.2
SCN5A-205ENST00000423572 NEXNQ0ZGT2 675 aa13.79□□□□□ -0.2
SCN5A-205ENST00000423572 HMMRO75330 724 aa13.78□□□□□ -0.2
SCN5A-205ENST00000423572 VSIG10Q8N0Z9 540 aa13.78□□□□□ -0.2
SCN5A-205ENST00000423572 TEFQ10587 303 aa13.78□□□□□ -0.2
SCN5A-205ENST00000423572 SMC4Q9NTJ3 1288 aa13.78□□□□□ -0.2
SCN5A-205ENST00000423572 LMOD3Q0VAK6 560 aa13.77□□□□□ -0.2
SCN5A-205ENST00000423572 TSR1Q2NL82 804 aaKnown RBP13.77□□□□□ -0.2
SCN5A-205ENST00000423572 TMEM87AQ8NBN3 555 aa13.77□□□□□ -0.2
SCN5A-205ENST00000423572 FHAD1B1AJZ9 1412 aa13.77□□□□□ -0.2
SCN5A-205ENST00000423572 KIF3AQ9Y496 699 aa13.77□□□□□ -0.21
SCN5A-205ENST00000423572 PTMSP20962 102 aa13.76□□□□□ -0.21
SCN5A-205ENST00000423572 ODF2Q5BJF6 829 aa13.76□□□□□ -0.21
SCN5A-205ENST00000423572 USP35Q9P2H5 1018 aa13.75□□□□□ -0.21
SCN5A-205ENST00000423572 FAM69CQ0P6D2 419 aa13.75□□□□□ -0.21
SCN5A-205ENST00000423572 APPP05067 770 aa13.75□□□□□ -0.21
SCN5A-205ENST00000423572 TPM3P06753 285 aa13.75□□□□□ -0.21
SCN5A-205ENST00000423572 ITPRIPQ8IWB1 547 aa13.75□□□□□ -0.21
SCN5A-205ENST00000423572 WRNQ14191 1432 aaPredicted RBP eCLIP13.75□□□□□ -0.21
SCN5A-205ENST00000423572 WDR70Q9NW82 654 aa13.74□□□□□ -0.21
SCN5A-205ENST00000423572 HMGB2P26583 209 aaKnown RBP13.74□□□□□ -0.21
SCN5A-205ENST00000423572 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.73□□□□□ -0.21
SCN5A-205ENST00000423572 SF3A1Q15459 793 aaKnown RBP13.73□□□□□ -0.21
SCN5A-205ENST00000423572 SLC4A3P48751 1232 aa13.73□□□□□ -0.21
SCN5A-205ENST00000423572 GOLGA6L1Q8N7Z2 621 aa13.72□□□□□ -0.21
SCN5A-205ENST00000423572 C16orf71Q8IYS4 520 aaPredicted RBP13.72□□□□□ -0.21
SCN5A-205ENST00000423572 ROCK2O75116 1388 aaKnown RBP13.71□□□□□ -0.22
SCN5A-205ENST00000423572 CEP164Q9UPV0 1460 aa13.7□□□□□ -0.22
SCN5A-205ENST00000423572 CT47A1Q5JQC4 288 aaPredicted RBP13.7□□□□□ -0.22
SCN5A-205ENST00000423572 COG3Q96JB2 828 aa13.7□□□□□ -0.22
SCN5A-205ENST00000423572 ERICH2A1L162 156 aa13.7□□□□□ -0.22
SCN5A-205ENST00000423572 CCDC47Q96A33 483 aaKnown RBP13.7□□□□□ -0.22
SCN5A-205ENST00000423572 CECR2Q9BXF3 1484 aa13.69□□□□□ -0.22
SCN5A-205ENST00000423572 CSPP1Q1MSJ5 1256 aa13.69□□□□□ -0.22
SCN5A-205ENST00000423572 CCDC27Q2M243 656 aa13.68□□□□□ -0.22
SCN5A-205ENST00000423572 RAPGEF4Q8WZA2 1011 aa13.68□□□□□ -0.22
SCN5A-205ENST00000423572 CHMP4CQ96CF2 233 aa13.68□□□□□ -0.22
SCN5A-205ENST00000423572 C9orf78Q9NZ63 289 aaPredicted RBP13.68□□□□□ -0.22
SCN5A-205ENST00000423572 KIF16BQ96L93 1317 aa13.68□□□□□ -0.22
SCN5A-205ENST00000423572 H3BQV1 296 aa13.67□□□□□ -0.22
SCN5A-205ENST00000423572 MAP3K9P80192 1104 aa13.67□□□□□ -0.22
SCN5A-205ENST00000423572 TRIM29Q14134 588 aa13.67□□□□□ -0.22
SCN5A-205ENST00000423572 IFFO2Q5TF58 517 aa13.67□□□□□ -0.22
SCN5A-205ENST00000423572 FYB1O15117 783 aa13.67□□□□□ -0.22
SCN5A-205ENST00000423572 PDE3BQ13370 1112 aa13.67□□□□□ -0.22
SCN5A-205ENST00000423572 CPLX2Q6PUV4 134 aaKnown RBP13.66□□□□□ -0.22
SCN5A-205ENST00000423572 MSNP26038 577 aaKnown RBP13.66□□□□□ -0.22
SCN5A-205ENST00000423572 DDX58O95786 925 aaKnown RBP13.66□□□□□ -0.22
SCN5A-205ENST00000423572 SYAP1Q96A49 352 aaPredicted RBP13.66□□□□□ -0.22
SCN5A-205ENST00000423572 PCMTD1Q96MG8 357 aaPredicted RBP13.66□□□□□ -0.22
SCN5A-205ENST00000423572 STRN4Q9NRL3 753 aa13.66□□□□□ -0.22
SCN5A-205ENST00000423572 RBM5P52756 815 aaKnown RBP eCLIP13.65□□□□□ -0.22
SCN5A-205ENST00000423572 SPRYD3Q8NCJ5 442 aa13.65□□□□□ -0.22
SCN5A-205ENST00000423572 MYCNP04198 464 aaPredicted RBP13.65□□□□□ -0.22
SCN5A-205ENST00000423572 TPM1P09493 284 aa13.65□□□□□ -0.23
SCN5A-205ENST00000423572 TRDNQ13061 729 aa13.64□□□□□ -0.23
SCN5A-205ENST00000423572 TTLL12Q14166 644 aaPredicted RBP13.64□□□□□ -0.23
SCN5A-205ENST00000423572 ZFYVE27Q5T4F4 411 aa13.64□□□□□ -0.23
SCN5A-205ENST00000423572 KTN1Q86UP2 1357 aaKnown RBP13.64□□□□□ -0.23
SCN5A-205ENST00000423572 IBSPP21815 317 aaPredicted RBP13.64□□□□□ -0.23
SCN5A-205ENST00000423572 B4GALNT3Q6L9W6 998 aa13.64□□□□□ -0.23
SCN5A-205ENST00000423572 FAM184AQ8NB25 1140 aa13.64□□□□□ -0.23
SCN5A-205ENST00000423572 CUX2O14529 1486 aa13.63□□□□□ -0.23
SCN5A-205ENST00000423572 EIF2S2P20042 333 aaKnown RBP13.63□□□□□ -0.23
SCN5A-205ENST00000423572 CEP162Q5TB80 1403 aa13.63□□□□□ -0.23
SCN5A-205ENST00000423572 KIF6Q6ZMV9 814 aa13.63□□□□□ -0.23
SCN5A-205ENST00000423572 CCDC97Q96F63 343 aaPredicted RBP13.63□□□□□ -0.23
SCN5A-205ENST00000423572 PRDM2Q13029 1718 aa13.62□□□□□ -0.23
SCN5A-205ENST00000423572 NLRP2Q9NX02 1062 aa13.62□□□□□ -0.23
SCN5A-205ENST00000423572 NFXL1Q6ZNB6 911 aa13.62□□□□□ -0.23
SCN5A-205ENST00000423572 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
SCN5A-205ENST00000423572 MPHOSPH10O00566 681 aaKnown RBP13.61□□□□□ -0.23
SCN5A-205ENST00000423572 EPS15P42566 896 aa13.61□□□□□ -0.23
SCN5A-205ENST00000423572 PKD2Q13563 968 aa13.61□□□□□ -0.23
SCN5A-205ENST00000423572 NAP1L5Q96NT1 182 aaPredicted RBP13.6□□□□□ -0.23
SCN5A-205ENST00000423572 NUP155O75694 1391 aa13.6□□□□□ -0.23
SCN5A-205ENST00000423572 ANKRD30AQ9BXX3 1397 aa13.59□□□□□ -0.23
SCN5A-205ENST00000423572 UACAQ9BZF9 1416 aa13.59□□□□□ -0.23
SCN5A-205ENST00000423572 CCDC70Q6NSX1 233 aa13.59□□□□□ -0.23
SCN5A-205ENST00000423572 FAM177BA6PVY3 158 aa13.58□□□□□ -0.23
SCN5A-205ENST00000423572 PROSER2Q86WR7 435 aaPredicted RBP13.58□□□□□ -0.23
SCN5A-205ENST00000423572 RDXP35241 583 aaKnown RBP13.58□□□□□ -0.24
SCN5A-205ENST00000423572 MTMR7Q9Y216 660 aa13.58□□□□□ -0.24
SCN5A-205ENST00000423572 ANKRD20A12PQ8NF67 263 aa13.58□□□□□ -0.24
SCN5A-205ENST00000423572 ATP2B2Q01814 1243 aa13.58□□□□□ -0.24
SCN5A-205ENST00000423572 PLIN1O60240 522 aa13.58□□□□□ -0.24
SCN5A-205ENST00000423572 TRAK1Q9UPV9 953 aa13.58□□□□□ -0.24
SCN5A-205ENST00000423572 GPRASP1Q5JY77 1395 aa13.58□□□□□ -0.24
SCN5A-205ENST00000423572 VGFO15240 615 aaPredicted RBP13.58□□□□□ -0.24
SCN5A-205ENST00000423572 NOL8Q76FK4 1167 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms