RNA–Protein interactions for RNA: ENST00000423442.6

LINC00458-201, long intergenic non-protein coding RNA 458, humanhuman

TSL 1 (best) BASIC

Gene LINC00458, Length 1,060 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-201ENST00000423442 BBXQ8WY36 941 aaPredicted RBP12.4□□□□□ -0.42
LINC00458-201ENST00000423442 NBPF3Q9H094 633 aa12.4□□□□□ -0.42
LINC00458-201ENST00000423442 IFFO2Q5TF58 517 aa12.39□□□□□ -0.43
LINC00458-201ENST00000423442 FBXW7Q969H0 707 aa12.38□□□□□ -0.43
LINC00458-201ENST00000423442 RABGEF1Q9UJ41 708 aa12.36□□□□□ -0.43
LINC00458-201ENST00000423442 RGS20O76081 388 aa12.34□□□□□ -0.43
LINC00458-201ENST00000423442 CCDC180Q9P1Z9 1646 aa12.33□□□□□ -0.43
LINC00458-201ENST00000423442 DDX12PQ92771 950 aa12.33□□□□□ -0.44
LINC00458-201ENST00000423442 C6orf132Q5T0Z8 1188 aa12.32□□□□□ -0.44
LINC00458-201ENST00000423442 RBM33Q96EV2 1170 aaKnown RBP12.32□□□□□ -0.44
LINC00458-201ENST00000423442 EPAS1Q99814 870 aa12.31□□□□□ -0.44
LINC00458-201ENST00000423442 KIAA1468Q9P260 1216 aa12.31□□□□□ -0.44
LINC00458-201ENST00000423442 SPRYD3Q8NCJ5 442 aa12.29□□□□□ -0.44
LINC00458-201ENST00000423442 BCAMP50895 628 aa12.28□□□□□ -0.44
LINC00458-201ENST00000423442 ANKK1Q8NFD2 765 aa12.28□□□□□ -0.44
LINC00458-201ENST00000423442 A0A0G2JS52 829 aa12.27□□□□□ -0.45
LINC00458-201ENST00000423442 SEPT9Q9UHD8 586 aaPredicted RBP12.26□□□□□ -0.45
LINC00458-201ENST00000423442 LAPTM4BQ86VI4 370 aa12.24□□□□□ -0.45
LINC00458-201ENST00000423442 ZFRQ96KR1 1074 aaKnown RBP12.24□□□□□ -0.45
LINC00458-201ENST00000423442 TRIM6-TRIM34B2RNG4 842 aa12.23□□□□□ -0.45
LINC00458-201ENST00000423442 NBR1Q14596 966 aa12.23□□□□□ -0.45
LINC00458-201ENST00000423442 SOWAHBA6NEL2 793 aa12.22□□□□□ -0.45
LINC00458-201ENST00000423442 ONECUT3O60422 494 aaPredicted RBP12.22□□□□□ -0.45
LINC00458-201ENST00000423442 PDIA6Q15084 440 aa12.22□□□□□ -0.45
LINC00458-201ENST00000423442 TSR1Q2NL82 804 aaKnown RBP12.22□□□□□ -0.45
LINC00458-201ENST00000423442 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.22□□□□□ -0.45
LINC00458-201ENST00000423442 EN1Q05925 392 aaPredicted RBP12.2□□□□□ -0.46
LINC00458-201ENST00000423442 MAP3K7O43318 606 aa12.19□□□□□ -0.46
LINC00458-201ENST00000423442 PAXIP1Q6ZW49 1069 aaPredicted RBP12.19□□□□□ -0.46
LINC00458-201ENST00000423442 CFAP44Q96MT7 982 aa12.19□□□□□ -0.46
LINC00458-201ENST00000423442 IRX2Q9BZI1 471 aaPredicted RBP12.19□□□□□ -0.46
LINC00458-201ENST00000423442 RTN4Q9NQC3 1192 aaKnown RBP12.19□□□□□ -0.46
LINC00458-201ENST00000423442 AMER1Q5JTC6 1135 aaPredicted RBP12.18□□□□□ -0.46
LINC00458-201ENST00000423442 WBP1LQ9NX94 342 aa12.18□□□□□ -0.46
LINC00458-201ENST00000423442 E2F4Q16254 413 aa12.17□□□□□ -0.46
LINC00458-201ENST00000423442 SPDYE16A6NNV3 312 aaPredicted RBP12.16□□□□□ -0.46
LINC00458-201ENST00000423442 ITGBL1O95965 494 aaPredicted RBP12.16□□□□□ -0.46
LINC00458-201ENST00000423442 FAM98CQ17RN3 349 aaKnown RBP12.16□□□□□ -0.46
LINC00458-201ENST00000423442 TSKSQ9UJT2 592 aa12.16□□□□□ -0.46
LINC00458-201ENST00000423442 PRIM1P49642 420 aaKnown RBP12.15□□□□□ -0.46
LINC00458-201ENST00000423442 GRXCR2A6NFK2 248 aa12.12□□□□□ -0.47
LINC00458-201ENST00000423442 WDR70Q9NW82 654 aa12.12□□□□□ -0.47
LINC00458-201ENST00000423442 NYAP1Q6ZVC0 841 aa12.11□□□□□ -0.47
LINC00458-201ENST00000423442 PACS2Q86VP3 889 aa12.11□□□□□ -0.47
LINC00458-201ENST00000423442 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.11□□□□□ -0.47
LINC00458-201ENST00000423442 LRCH3Q96II8 777 aa12.1□□□□□ -0.47
LINC00458-201ENST00000423442 HPS5Q9UPZ3 1129 aa12.1□□□□□ -0.47
LINC00458-201ENST00000423442 SMAPO00193 183 aa12.09□□□□□ -0.47
LINC00458-201ENST00000423442 CDCA7LQ96GN5 454 aa12.09□□□□□ -0.47
LINC00458-201ENST00000423442 FAM198AQ9UFP1 575 aa12.09□□□□□ -0.47
LINC00458-201ENST00000423442 TSR3Q9UJK0 312 aaKnown RBP12.09□□□□□ -0.47
LINC00458-201ENST00000423442 ARIH1Q9Y4X5 557 aaPredicted RBP12.09□□□□□ -0.47
LINC00458-201ENST00000423442 C3orf80F5H4A9 247 aa12.07□□□□□ -0.48
LINC00458-201ENST00000423442 PRSS12P56730 875 aa12.07□□□□□ -0.48
LINC00458-201ENST00000423442 KCNC4Q03721 635 aa12.05□□□□□ -0.48
LINC00458-201ENST00000423442 CDHR5Q9HBB8 845 aa12.05□□□□□ -0.48
LINC00458-201ENST00000423442 OSBPP22059 807 aa12.04□□□□□ -0.48
LINC00458-201ENST00000423442 SAMD7Q7Z3H4 446 aa12.03□□□□□ -0.48
LINC00458-201ENST00000423442 PPP4CP60510 307 aa12.01□□□□□ -0.49
LINC00458-201ENST00000423442 CERKQ8TCT0 537 aa12.01□□□□□ -0.49
LINC00458-201ENST00000423442 TATDN2Q93075 761 aa12.01□□□□□ -0.49
LINC00458-201ENST00000423442 PNMA3Q9UL41 463 aa12□□□□□ -0.49
LINC00458-201ENST00000423442 NBPF26B4DH59 902 aa11.97□□□□□ -0.49
LINC00458-201ENST00000423442 NUDT18Q6ZVK8 323 aa11.96□□□□□ -0.49
LINC00458-201ENST00000423442 TJAP1Q5JTD0 557 aa11.93□□□□□ -0.5
LINC00458-201ENST00000423442 NPDC1Q9NQX5 325 aaPredicted RBP11.93□□□□□ -0.5
LINC00458-201ENST00000423442 RNF40O75150 1001 aa11.91□□□□□ -0.5
LINC00458-201ENST00000423442 PADI6Q6TGC4 694 aa11.91□□□□□ -0.5
LINC00458-201ENST00000423442 Q6ZNB5 142 aa11.91□□□□□ -0.5
LINC00458-201ENST00000423442 TSHZ2Q9NRE2 1034 aa11.91□□□□□ -0.5
LINC00458-201ENST00000423442 RBM27Q9P2N5 1060 aaKnown RBP11.91□□□□□ -0.5
LINC00458-201ENST00000423442 RB1CC1Q8TDY2 1594 aa11.91□□□□□ -0.5
LINC00458-201ENST00000423442 TTC13Q8NBP0 860 aa11.89□□□□□ -0.51
LINC00458-201ENST00000423442 MTRQ99707 1265 aa11.89□□□□□ -0.51
LINC00458-201ENST00000423442 MLLT3P42568 568 aaPredicted RBP11.87□□□□□ -0.51
LINC00458-201ENST00000423442 HDGFP51858 240 aaKnown RBP11.87□□□□□ -0.51
LINC00458-201ENST00000423442 APLP1P51693 650 aa11.86□□□□□ -0.51
LINC00458-201ENST00000423442 SWT1Q5T5J6 900 aaKnown RBP11.85□□□□□ -0.51
LINC00458-201ENST00000423442 ZNF516Q92618 1163 aa11.85□□□□□ -0.51
LINC00458-201ENST00000423442 IL21Q9HBE4 155 aa11.85□□□□□ -0.51
LINC00458-201ENST00000423442 LAPTM4AQ15012 233 aa11.84□□□□□ -0.51
LINC00458-201ENST00000423442 KCNV2Q8TDN2 545 aa11.84□□□□□ -0.51
LINC00458-201ENST00000423442 ARHGEF1Q92888 912 aaKnown RBP11.83□□□□□ -0.52
LINC00458-201ENST00000423442 EYA1Q99502 592 aa11.81□□□□□ -0.52
LINC00458-201ENST00000423442 PPP1R18Q6NYC8 613 aa11.8□□□□□ -0.52
LINC00458-201ENST00000423442 NKX2-3Q8TAU0 364 aa11.79□□□□□ -0.52
LINC00458-201ENST00000423442 SLF2Q8IX21 1173 aa11.78□□□□□ -0.52
LINC00458-201ENST00000423442 PRKD2Q9BZL6 878 aa11.78□□□□□ -0.52
LINC00458-201ENST00000423442 GFRA3O60609 400 aa11.77□□□□□ -0.53
LINC00458-201ENST00000423442 COPS2P61201 443 aa11.77□□□□□ -0.53
LINC00458-201ENST00000423442 LCE2BO14633 110 aa11.76□□□□□ -0.53
LINC00458-201ENST00000423442 PTGDRQ13258 359 aa11.75□□□□□ -0.53
LINC00458-201ENST00000423442 TRAF7Q6Q0C0 670 aa11.74□□□□□ -0.53
LINC00458-201ENST00000423442 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.74□□□□□ -0.53
LINC00458-201ENST00000423442 NACADO15069 1562 aa11.74□□□□□ -0.53
LINC00458-201ENST00000423442 NECTIN2Q92692 538 aa11.73□□□□□ -0.53
LINC00458-201ENST00000423442 NUTM2FA1L443 756 aa11.71□□□□□ -0.53
LINC00458-201ENST00000423442 FAM161AQ3B820 660 aa11.71□□□□□ -0.53
LINC00458-201ENST00000423442 V9GY48 417 aaPredicted RBP11.71□□□□□ -0.53
LINC00458-201ENST00000423442 SLC4A3P48751 1232 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms