RNA–Protein interactions for RNA: ENST00000420047.1

SEMA3A-202, Transcript of semaphorin 3A, humanhuman

TSL 4

Gene SEMA3A, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-202ENST00000420047 CAMK2BQ13554 666 aa9.93□□□□□ -0.82
SEMA3A-202ENST00000420047 CADPS2Q86UW7 1296 aa9.93□□□□□ -0.82
SEMA3A-202ENST00000420047 LAPTM4BQ86VI4 370 aa9.93□□□□□ -0.82
SEMA3A-202ENST00000420047 ANKK1Q8NFD2 765 aa9.93□□□□□ -0.82
SEMA3A-202ENST00000420047 COL9A1P20849 921 aa9.92□□□□□ -0.82
SEMA3A-202ENST00000420047 EPAS1Q99814 870 aa9.92□□□□□ -0.82
SEMA3A-202ENST00000420047 PROX2Q3B8N5 592 aa9.91□□□□□ -0.82
SEMA3A-202ENST00000420047 NYAP1Q6ZVC0 841 aa9.89□□□□□ -0.83
SEMA3A-202ENST00000420047 C6orf132Q5T0Z8 1188 aa9.88□□□□□ -0.83
SEMA3A-202ENST00000420047 KIAA1468Q9P260 1216 aa9.88□□□□□ -0.83
SEMA3A-202ENST00000420047 SOWAHBA6NEL2 793 aa9.87□□□□□ -0.83
SEMA3A-202ENST00000420047 ITGBL1O95965 494 aaPredicted RBP9.87□□□□□ -0.83
SEMA3A-202ENST00000420047 ZFRQ96KR1 1074 aaKnown RBP9.85□□□□□ -0.83
SEMA3A-202ENST00000420047 IRX2Q9BZI1 471 aaPredicted RBP9.85□□□□□ -0.83
SEMA3A-202ENST00000420047 DPYSL4O14531 572 aa9.84□□□□□ -0.83
SEMA3A-202ENST00000420047 TRIM6-TRIM34B2RNG4 842 aa9.83□□□□□ -0.84
SEMA3A-202ENST00000420047 BCAMP50895 628 aa9.83□□□□□ -0.84
SEMA3A-202ENST00000420047 FAM98CQ17RN3 349 aaKnown RBP9.8□□□□□ -0.84
SEMA3A-202ENST00000420047 BBXQ8WY36 941 aaPredicted RBP9.8□□□□□ -0.84
SEMA3A-202ENST00000420047 DDX12PQ92771 950 aa9.78□□□□□ -0.84
SEMA3A-202ENST00000420047 RBM33Q96EV2 1170 aaKnown RBP9.78□□□□□ -0.84
SEMA3A-202ENST00000420047 WBP1LQ9NX94 342 aa9.78□□□□□ -0.84
SEMA3A-202ENST00000420047 SEPT9Q9UHD8 586 aaPredicted RBP9.78□□□□□ -0.84
SEMA3A-202ENST00000420047 KCNC4Q03721 635 aa9.77□□□□□ -0.85
SEMA3A-202ENST00000420047 TSR3Q9UJK0 312 aaKnown RBP9.77□□□□□ -0.85
SEMA3A-202ENST00000420047 SPDYE16A6NNV3 312 aaPredicted RBP9.76□□□□□ -0.85
SEMA3A-202ENST00000420047 EN1Q05925 392 aaPredicted RBP9.76□□□□□ -0.85
SEMA3A-202ENST00000420047 PACS2Q86VP3 889 aa9.76□□□□□ -0.85
SEMA3A-202ENST00000420047 LRCH3Q96II8 777 aa9.76□□□□□ -0.85
SEMA3A-202ENST00000420047 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.76□□□□□ -0.85
SEMA3A-202ENST00000420047 PDIA6Q15084 440 aa9.75□□□□□ -0.85
SEMA3A-202ENST00000420047 NBR1Q14596 966 aa9.73□□□□□ -0.85
SEMA3A-202ENST00000420047 MAP3K7O43318 606 aa9.72□□□□□ -0.85
SEMA3A-202ENST00000420047 HPS5Q9UPZ3 1129 aa9.72□□□□□ -0.85
SEMA3A-202ENST00000420047 TSKSQ9UJT2 592 aa9.71□□□□□ -0.86
SEMA3A-202ENST00000420047 TSR1Q2NL82 804 aaKnown RBP9.7□□□□□ -0.86
SEMA3A-202ENST00000420047 CERKQ8TCT0 537 aa9.7□□□□□ -0.86
SEMA3A-202ENST00000420047 SPRYD3Q8NCJ5 442 aa9.69□□□□□ -0.86
SEMA3A-202ENST00000420047 ARIH1Q9Y4X5 557 aaPredicted RBP9.69□□□□□ -0.86
SEMA3A-202ENST00000420047 PPP4CP60510 307 aa9.68□□□□□ -0.86
SEMA3A-202ENST00000420047 PRSS12P56730 875 aa9.67□□□□□ -0.86
SEMA3A-202ENST00000420047 E2F4Q16254 413 aa9.67□□□□□ -0.86
SEMA3A-202ENST00000420047 CDCA7LQ96GN5 454 aa9.67□□□□□ -0.86
SEMA3A-202ENST00000420047 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.65□□□□□ -0.86
SEMA3A-202ENST00000420047 LAPTM4AQ15012 233 aa9.63□□□□□ -0.87
SEMA3A-202ENST00000420047 WDR70Q9NW82 654 aa9.63□□□□□ -0.87
SEMA3A-202ENST00000420047 NBPF26B4DH59 902 aa9.62□□□□□ -0.87
SEMA3A-202ENST00000420047 SAMD7Q7Z3H4 446 aa9.62□□□□□ -0.87
SEMA3A-202ENST00000420047 TJAP1Q5JTD0 557 aa9.61□□□□□ -0.87
SEMA3A-202ENST00000420047 Q6ZNB5 142 aa9.61□□□□□ -0.87
SEMA3A-202ENST00000420047 TATDN2Q93075 761 aa9.61□□□□□ -0.87
SEMA3A-202ENST00000420047 FAM198AQ9UFP1 575 aa9.61□□□□□ -0.87
SEMA3A-202ENST00000420047 GRXCR2A6NFK2 248 aa9.6□□□□□ -0.87
SEMA3A-202ENST00000420047 SMAPO00193 183 aa9.6□□□□□ -0.87
SEMA3A-202ENST00000420047 RBM27Q9P2N5 1060 aaKnown RBP9.6□□□□□ -0.87
SEMA3A-202ENST00000420047 PRIM1P49642 420 aaKnown RBP9.59□□□□□ -0.87
SEMA3A-202ENST00000420047 HDGFP51858 240 aaKnown RBP9.59□□□□□ -0.87
SEMA3A-202ENST00000420047 PNMA3Q9UL41 463 aa9.59□□□□□ -0.87
SEMA3A-202ENST00000420047 OSBPP22059 807 aa9.58□□□□□ -0.88
SEMA3A-202ENST00000420047 IL21Q9HBE4 155 aa9.58□□□□□ -0.88
SEMA3A-202ENST00000420047 NECTIN2Q92692 538 aa9.57□□□□□ -0.88
SEMA3A-202ENST00000420047 MTRQ99707 1265 aa9.56□□□□□ -0.88
SEMA3A-202ENST00000420047 C3orf80F5H4A9 247 aa9.55□□□□□ -0.88
SEMA3A-202ENST00000420047 NUDT18Q6ZVK8 323 aa9.55□□□□□ -0.88
SEMA3A-202ENST00000420047 TTC13Q8NBP0 860 aa9.53□□□□□ -0.88
SEMA3A-202ENST00000420047 GFRA3O60609 400 aa9.52□□□□□ -0.89
SEMA3A-202ENST00000420047 PPP1R18Q6NYC8 613 aa9.52□□□□□ -0.89
SEMA3A-202ENST00000420047 PAXIP1Q6ZW49 1069 aaPredicted RBP9.52□□□□□ -0.89
SEMA3A-202ENST00000420047 PRKD2Q9BZL6 878 aa9.52□□□□□ -0.89
SEMA3A-202ENST00000420047 CDHR5Q9HBB8 845 aa9.52□□□□□ -0.89
SEMA3A-202ENST00000420047 V9GY48 417 aaPredicted RBP9.52□□□□□ -0.89
SEMA3A-202ENST00000420047 CFAP44Q96MT7 982 aa9.51□□□□□ -0.89
SEMA3A-202ENST00000420047 APLP1P51693 650 aa9.5□□□□□ -0.89
SEMA3A-202ENST00000420047 AMER1Q5JTC6 1135 aaPredicted RBP9.5□□□□□ -0.89
SEMA3A-202ENST00000420047 RNF40O75150 1001 aa9.49□□□□□ -0.89
SEMA3A-202ENST00000420047 SLF2Q8IX21 1173 aa9.49□□□□□ -0.89
SEMA3A-202ENST00000420047 NPDC1Q9NQX5 325 aaPredicted RBP9.49□□□□□ -0.89
SEMA3A-202ENST00000420047 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.49□□□□□ -0.89
SEMA3A-202ENST00000420047 NRG2O14511 850 aaPredicted RBP9.48□□□□□ -0.89
SEMA3A-202ENST00000420047 SLC4A3P48751 1232 aa9.48□□□□□ -0.89
SEMA3A-202ENST00000420047 TRAF7Q6Q0C0 670 aa9.48□□□□□ -0.89
SEMA3A-202ENST00000420047 ZNF516Q92618 1163 aa9.48□□□□□ -0.89
SEMA3A-202ENST00000420047 GGCXP38435 758 aa9.46□□□□□ -0.9
SEMA3A-202ENST00000420047 SWT1Q5T5J6 900 aaKnown RBP9.46□□□□□ -0.9
SEMA3A-202ENST00000420047 PADI6Q6TGC4 694 aa9.46□□□□□ -0.9
SEMA3A-202ENST00000420047 EYA1Q99502 592 aa9.44□□□□□ -0.9
SEMA3A-202ENST00000420047 TMUB1Q9BVT8 246 aa9.44□□□□□ -0.9
SEMA3A-202ENST00000420047 PRR14Q9BWN1 585 aa9.44□□□□□ -0.9
SEMA3A-202ENST00000420047 LCE2BO14633 110 aa9.43□□□□□ -0.9
SEMA3A-202ENST00000420047 NKX2-3Q8TAU0 364 aa9.42□□□□□ -0.9
SEMA3A-202ENST00000420047 ARHGEF1Q92888 912 aaKnown RBP9.41□□□□□ -0.9
SEMA3A-202ENST00000420047 ZPR1O75312 459 aa9.4□□□□□ -0.9
SEMA3A-202ENST00000420047 COPS2P61201 443 aa9.4□□□□□ -0.9
SEMA3A-202ENST00000420047 PDZRN3Q9UPQ7 1066 aa9.38□□□□□ -0.91
SEMA3A-202ENST00000420047 DNAJB2P25686 324 aa9.36□□□□□ -0.91
SEMA3A-202ENST00000420047 PCDHB3Q9Y5E6 796 aa9.36□□□□□ -0.91
SEMA3A-202ENST00000420047 MLLT3P42568 568 aaPredicted RBP9.35□□□□□ -0.91
SEMA3A-202ENST00000420047 PTGDRQ13258 359 aa9.35□□□□□ -0.91
SEMA3A-202ENST00000420047 RBM46Q8TBY0 533 aaKnown RBP9.35□□□□□ -0.91
SEMA3A-202ENST00000420047 RTN4Q9NQC3 1192 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms