RNA–Protein interactions for RNA: ENST00000420047.1

SEMA3A-202, Transcript of semaphorin 3A, humanhuman

TSL 4

Gene SEMA3A, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-202ENST00000420047 AEBP2Q6ZN18 517 aaPredicted RBP24.68■■□□□ 1.54
SEMA3A-202ENST00000420047 CHIC1Q5VXU3 224 aa23.41■■□□□ 1.34
SEMA3A-202ENST00000420047 SENP3Q9H4L4 574 aaPredicted RBP21.15■□□□□ 0.98
SEMA3A-202ENST00000420047 PHF23Q9BUL5 403 aaPredicted RBP20.83■□□□□ 0.93
SEMA3A-202ENST00000420047 FOXD1Q16676 465 aa19.68■□□□□ 0.74
SEMA3A-202ENST00000420047 PLPPR3Q6T4P5 718 aa18.69■□□□□ 0.58
SEMA3A-202ENST00000420047 MSH5O43196 834 aa18.52■□□□□ 0.56
SEMA3A-202ENST00000420047 PIAS4Q8N2W9 510 aaPredicted RBP18.37■□□□□ 0.53
SEMA3A-202ENST00000420047 PPP6R1Q9UPN7 881 aa18.29■□□□□ 0.52
SEMA3A-202ENST00000420047 ADRA2BP18089 450 aa18.23■□□□□ 0.51
SEMA3A-202ENST00000420047 POTEDQ86YR6 584 aa18.17■□□□□ 0.5
SEMA3A-202ENST00000420047 SCAF1Q9H7N4 1312 aaKnown RBP16.8■□□□□ 0.28
SEMA3A-202ENST00000420047 MAPK8IP2Q13387 824 aaPredicted RBP16.76■□□□□ 0.27
SEMA3A-202ENST00000420047 DMRT2Q9Y5R5 561 aa16.75■□□□□ 0.27
SEMA3A-202ENST00000420047 PPP4R3CPQ6ZMV5 832 aa16.33■□□□□ 0.2
SEMA3A-202ENST00000420047 HOXD11P31277 338 aaPredicted RBP16.11■□□□□ 0.17
SEMA3A-202ENST00000420047 CNKSR2Q8WXI2 1034 aa16.08■□□□□ 0.16
SEMA3A-202ENST00000420047 DCAF8L1A6NGE4 600 aa16.01■□□□□ 0.15
SEMA3A-202ENST00000420047 RNF216Q9NWF9 866 aaPredicted RBP15.97■□□□□ 0.15
SEMA3A-202ENST00000420047 CACNB1Q02641 598 aaPredicted RBP15.9■□□□□ 0.14
SEMA3A-202ENST00000420047 RNF39Q9H2S5 420 aa15.76■□□□□ 0.11
SEMA3A-202ENST00000420047 NCBP3Q53F19 620 aaKnown RBP15.74■□□□□ 0.11
SEMA3A-202ENST00000420047 DNAJC5BQ9UF47 199 aa15.66■□□□□ 0.1
SEMA3A-202ENST00000420047 C1QBPQ07021 282 aaKnown RBP15.57■□□□□ 0.08
SEMA3A-202ENST00000420047 NPM3O75607 178 aaKnown RBP15.43■□□□□ 0.06
SEMA3A-202ENST00000420047 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.33■□□□□ 0.04
SEMA3A-202ENST00000420047 KCNA4P22459 653 aa15.03■□□□□ -0
SEMA3A-202ENST00000420047 U3KPZ7 1027 aaPredicted RBP14.97□□□□□ -0.01
SEMA3A-202ENST00000420047 CAPN15O75808 1086 aa14.77□□□□□ -0.05
SEMA3A-202ENST00000420047 SLC4A2P04920 1241 aa14.76□□□□□ -0.05
SEMA3A-202ENST00000420047 SPINK5Q9NQ38 1064 aaPredicted RBP14.75□□□□□ -0.05
SEMA3A-202ENST00000420047 DSG3P32926 999 aa14.72□□□□□ -0.05
SEMA3A-202ENST00000420047 APLP2Q06481 763 aa14.65□□□□□ -0.06
SEMA3A-202ENST00000420047 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.61□□□□□ -0.07
SEMA3A-202ENST00000420047 HNRNPUL2Q1KMD3 747 aaKnown RBP14.61□□□□□ -0.07
SEMA3A-202ENST00000420047 ZNF219Q9P2Y4 722 aaPredicted RBP14.52□□□□□ -0.09
SEMA3A-202ENST00000420047 TRHP20396 242 aaPredicted RBP14.49□□□□□ -0.09
SEMA3A-202ENST00000420047 SAMD1Q6SPF0 538 aaPredicted RBP14.49□□□□□ -0.09
SEMA3A-202ENST00000420047 ABCB7O75027 752 aa14.37□□□□□ -0.11
SEMA3A-202ENST00000420047 MYCNP04198 464 aaPredicted RBP14.31□□□□□ -0.12
SEMA3A-202ENST00000420047 POTEHQ6S545 545 aa14.23□□□□□ -0.13
SEMA3A-202ENST00000420047 SLC4A1APQ9BWU0 796 aaKnown RBP14.2□□□□□ -0.14
SEMA3A-202ENST00000420047 POLA2Q14181 598 aa14.11□□□□□ -0.15
SEMA3A-202ENST00000420047 RBM42Q9BTD8 480 aaKnown RBP14.1□□□□□ -0.15
SEMA3A-202ENST00000420047 FOXD4L1Q9NU39 408 aa14.1□□□□□ -0.15
SEMA3A-202ENST00000420047 ATF5Q9Y2D1 282 aaPredicted RBP13.92□□□□□ -0.18
SEMA3A-202ENST00000420047 ZBTB12Q9Y330 459 aaPredicted RBP13.88□□□□□ -0.19
SEMA3A-202ENST00000420047 ZBTB22O15209 634 aa13.79□□□□□ -0.2
SEMA3A-202ENST00000420047 CHRDL2Q6WN34 429 aa13.78□□□□□ -0.2
SEMA3A-202ENST00000420047 ATXN8OSP0DMR3 200 aa13.74□□□□□ -0.21
SEMA3A-202ENST00000420047 AKT1S1Q96B36 256 aa13.74□□□□□ -0.21
SEMA3A-202ENST00000420047 OSCARQ8IYS5 282 aa13.62□□□□□ -0.23
SEMA3A-202ENST00000420047 REM2Q8IYK8 340 aaPredicted RBP13.58□□□□□ -0.24
SEMA3A-202ENST00000420047 FBLN2P98095 1184 aa13.47□□□□□ -0.25
SEMA3A-202ENST00000420047 SPDYE2BA6NHP3 402 aa13.42□□□□□ -0.26
SEMA3A-202ENST00000420047 SPDYE6P0CI01 402 aa13.42□□□□□ -0.26
SEMA3A-202ENST00000420047 SPDYE2Q495Y8 402 aa13.42□□□□□ -0.26
SEMA3A-202ENST00000420047 PIP4P2Q8N4L2 257 aa13.42□□□□□ -0.26
SEMA3A-202ENST00000420047 PITPNM1O00562 1244 aa13.41□□□□□ -0.26
SEMA3A-202ENST00000420047 FXR2P51116 673 aaKnown RBP eCLIP13.36□□□□□ -0.27
SEMA3A-202ENST00000420047 SP7Q8TDD2 431 aaPredicted RBP13.31□□□□□ -0.28
SEMA3A-202ENST00000420047 MKRN4PQ13434 485 aaPredicted RBP13.29□□□□□ -0.28
SEMA3A-202ENST00000420047 ZNF692Q9BU19 519 aaPredicted RBP13.22□□□□□ -0.29
SEMA3A-202ENST00000420047 HAX1O00165 279 aa13.21□□□□□ -0.29
SEMA3A-202ENST00000420047 SPDYE1Q8NFV5 336 aaPredicted RBP13.2□□□□□ -0.3
SEMA3A-202ENST00000420047 SSUH2Q9Y2M2 353 aa13.2□□□□□ -0.3
SEMA3A-202ENST00000420047 CLEC11AQ9Y240 323 aa13.13□□□□□ -0.31
SEMA3A-202ENST00000420047 CSRNP3Q8WYN3 585 aa13.1□□□□□ -0.31
SEMA3A-202ENST00000420047 PRKAR2AP13861 404 aaKnown RBP13.08□□□□□ -0.32
SEMA3A-202ENST00000420047 PABPN1Q86U42 306 aaKnown RBP eCLIP13□□□□□ -0.33
SEMA3A-202ENST00000420047 EVX2Q03828 476 aa12.99□□□□□ -0.33
SEMA3A-202ENST00000420047 PRR29P0C7W0 189 aa12.94□□□□□ -0.34
SEMA3A-202ENST00000420047 C19orf67A6NJJ6 358 aa12.93□□□□□ -0.34
SEMA3A-202ENST00000420047 CHADLQ6NUI6 762 aa12.86□□□□□ -0.35
SEMA3A-202ENST00000420047 EHMT2Q96KQ7 1210 aa12.83□□□□□ -0.36
SEMA3A-202ENST00000420047 GABBR2O75899 941 aa12.74□□□□□ -0.37
SEMA3A-202ENST00000420047 FARP1Q9Y4F1 1045 aaPredicted RBP12.72□□□□□ -0.37
SEMA3A-202ENST00000420047 STAG3Q9UJ98 1225 aa12.7□□□□□ -0.38
SEMA3A-202ENST00000420047 CD44P16070 742 aaKnown RBP12.66□□□□□ -0.38
SEMA3A-202ENST00000420047 SPDYE4A6NLX3 237 aa12.65□□□□□ -0.38
SEMA3A-202ENST00000420047 CLCN6P51797 869 aa12.64□□□□□ -0.39
SEMA3A-202ENST00000420047 CREBZFQ9NS37 354 aa12.57□□□□□ -0.4
SEMA3A-202ENST00000420047 LHX8Q68G74 356 aa12.48□□□□□ -0.41
SEMA3A-202ENST00000420047 ZNF579Q8NAF0 562 aaKnown RBP12.48□□□□□ -0.41
SEMA3A-202ENST00000420047 ZRANB1Q9UGI0 708 aa12.46□□□□□ -0.41
SEMA3A-202ENST00000420047 POTEIP0CG38 1075 aa12.44□□□□□ -0.42
SEMA3A-202ENST00000420047 NPM1P06748 294 aaKnown RBP eCLIP12.4□□□□□ -0.42
SEMA3A-202ENST00000420047 DCBLD2Q96PD2 775 aa12.4□□□□□ -0.42
SEMA3A-202ENST00000420047 PAK3O75914 559 aaPredicted RBP12.38□□□□□ -0.43
SEMA3A-202ENST00000420047 MNX1P50219 401 aaPredicted RBP12.35□□□□□ -0.43
SEMA3A-202ENST00000420047 PROM2Q8N271 834 aa12.35□□□□□ -0.43
SEMA3A-202ENST00000420047 GALR2O43603 387 aaPredicted RBP12.29□□□□□ -0.44
SEMA3A-202ENST00000420047 PHF12Q96QT6 1004 aa12.24□□□□□ -0.45
SEMA3A-202ENST00000420047 PLEKHG5O94827 1062 aa12.14□□□□□ -0.47
SEMA3A-202ENST00000420047 MIER1Q8N108 512 aa12.09□□□□□ -0.47
SEMA3A-202ENST00000420047 MS4A3Q96HJ5 214 aa12.09□□□□□ -0.47
SEMA3A-202ENST00000420047 TSPYL2Q9H2G4 693 aaPredicted RBP12.09□□□□□ -0.47
SEMA3A-202ENST00000420047 CCDC61Q9Y6R9 512 aa12.08□□□□□ -0.48
SEMA3A-202ENST00000420047 ASTLQ6HA08 431 aaPredicted RBP12.07□□□□□ -0.48
SEMA3A-202ENST00000420047 PELP1Q8IZL8 1130 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms