RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 EPAS1Q99814 870 aa8.94□□□□□ -0.98
HMGB3P20-201ENST00000417997 KCNV2Q8TDN2 545 aa8.93□□□□□ -0.98
HMGB3P20-201ENST00000417997 TK2O00142 265 aa8.92□□□□□ -0.98
HMGB3P20-201ENST00000417997 ARIH1Q9Y4X5 557 aaPredicted RBP8.92□□□□□ -0.98
HMGB3P20-201ENST00000417997 MAP3K7O43318 606 aa8.91□□□□□ -0.98
HMGB3P20-201ENST00000417997 ARHGEF1Q92888 912 aaKnown RBP8.9□□□□□ -0.98
HMGB3P20-201ENST00000417997 VPS9D1Q9Y2B5 631 aa8.9□□□□□ -0.98
HMGB3P20-201ENST00000417997 COL9A1P20849 921 aa8.89□□□□□ -0.99
HMGB3P20-201ENST00000417997 C6orf132Q5T0Z8 1188 aa8.89□□□□□ -0.99
HMGB3P20-201ENST00000417997 P3H3Q8IVL6 736 aa8.89□□□□□ -0.99
HMGB3P20-201ENST00000417997 PPP1R3GB7ZBB8 358 aa8.88□□□□□ -0.99
HMGB3P20-201ENST00000417997 ZBED2Q9BTP6 218 aa8.88□□□□□ -0.99
HMGB3P20-201ENST00000417997 EN1Q05925 392 aaPredicted RBP8.87□□□□□ -0.99
HMGB3P20-201ENST00000417997 HRO43593 1189 aa8.86□□□□□ -0.99
HMGB3P20-201ENST00000417997 PROX2Q3B8N5 592 aa8.86□□□□□ -0.99
HMGB3P20-201ENST00000417997 TSR1Q2NL82 804 aaKnown RBP8.85□□□□□ -0.99
HMGB3P20-201ENST00000417997 SLC4A5Q9BY07 1137 aa8.85□□□□□ -0.99
HMGB3P20-201ENST00000417997 GOLGA8CPA6NN73 597 aa8.84□□□□□ -0.99
HMGB3P20-201ENST00000417997 MRPL50Q8N5N7 158 aaKnown RBP8.83□□□□□ -1
HMGB3P20-201ENST00000417997 KCTD12Q96CX2 325 aaKnown RBP8.83□□□□□ -1
HMGB3P20-201ENST00000417997 KDM2AQ9Y2K7 1162 aa8.83□□□□□ -1
HMGB3P20-201ENST00000417997 OSBPP22059 807 aa8.82□□□□□ -1
HMGB3P20-201ENST00000417997 MLLT3P42568 568 aaPredicted RBP8.82□□□□□ -1
HMGB3P20-201ENST00000417997 PRIM1P49642 420 aaKnown RBP8.82□□□□□ -1
HMGB3P20-201ENST00000417997 NBPF3Q9H094 633 aa8.82□□□□□ -1
HMGB3P20-201ENST00000417997 KIAA1468Q9P260 1216 aa8.8□□□□□ -1
HMGB3P20-201ENST00000417997 RABGEF1Q9UJ41 708 aa8.8□□□□□ -1
HMGB3P20-201ENST00000417997 CDHR5Q9HBB8 845 aa8.79□□□□□ -1
HMGB3P20-201ENST00000417997 TRIM6-TRIM34B2RNG4 842 aa8.78□□□□□ -1
HMGB3P20-201ENST00000417997 BHMG1C9JSJ3 638 aaPredicted RBP8.78□□□□□ -1
HMGB3P20-201ENST00000417997 SEMA3EO15041 775 aa8.78□□□□□ -1
HMGB3P20-201ENST00000417997 VSIG10Q8N0Z9 540 aa8.78□□□□□ -1
HMGB3P20-201ENST00000417997 WNT2BQ93097 391 aa8.77□□□□□ -1.01
HMGB3P20-201ENST00000417997 SEPT9Q9UHD8 586 aaPredicted RBP8.77□□□□□ -1.01
HMGB3P20-201ENST00000417997 HCSTQ9UBK5 93 aa8.76□□□□□ -1.01
HMGB3P20-201ENST00000417997 PTPN5P54829 565 aa8.75□□□□□ -1.01
HMGB3P20-201ENST00000417997 PRSS12P56730 875 aa8.75□□□□□ -1.01
HMGB3P20-201ENST00000417997 PACS2Q86VP3 889 aa8.75□□□□□ -1.01
HMGB3P20-201ENST00000417997 CERKQ8TCT0 537 aa8.75□□□□□ -1.01
HMGB3P20-201ENST00000417997 CDCA7LQ96GN5 454 aa8.75□□□□□ -1.01
HMGB3P20-201ENST00000417997 NUTM2FA1L443 756 aa8.74□□□□□ -1.01
HMGB3P20-201ENST00000417997 TSKSQ9UJT2 592 aa8.74□□□□□ -1.01
HMGB3P20-201ENST00000417997 ONECUT3O60422 494 aaPredicted RBP8.73□□□□□ -1.01
HMGB3P20-201ENST00000417997 ANKK1Q8NFD2 765 aa8.73□□□□□ -1.01
HMGB3P20-201ENST00000417997 SMAPO00193 183 aa8.71□□□□□ -1.02
HMGB3P20-201ENST00000417997 THSD4Q6ZMP0 1018 aa8.71□□□□□ -1.02
HMGB3P20-201ENST00000417997 LAPTM4BQ86VI4 370 aa8.71□□□□□ -1.02
HMGB3P20-201ENST00000417997 ZFRQ96KR1 1074 aaKnown RBP8.7□□□□□ -1.02
HMGB3P20-201ENST00000417997 NBPF26B4DH59 902 aa8.69□□□□□ -1.02
HMGB3P20-201ENST00000417997 FAM98CQ17RN3 349 aaKnown RBP8.69□□□□□ -1.02
HMGB3P20-201ENST00000417997 SMYD5Q6GMV2 418 aa8.69□□□□□ -1.02
HMGB3P20-201ENST00000417997 PADI6Q6TGC4 694 aa8.69□□□□□ -1.02
HMGB3P20-201ENST00000417997 FAM198AQ9UFP1 575 aa8.69□□□□□ -1.02
HMGB3P20-201ENST00000417997 PNMA3Q9UL41 463 aa8.69□□□□□ -1.02
HMGB3P20-201ENST00000417997 TESPA1A2RU30 521 aaPredicted RBP8.68□□□□□ -1.02
HMGB3P20-201ENST00000417997 BCAMP50895 628 aa8.68□□□□□ -1.02
HMGB3P20-201ENST00000417997 NPDC1Q9NQX5 325 aaPredicted RBP8.68□□□□□ -1.02
HMGB3P20-201ENST00000417997 NUDT18Q6ZVK8 323 aa8.67□□□□□ -1.02
HMGB3P20-201ENST00000417997 TATDN2Q93075 761 aa8.67□□□□□ -1.02
HMGB3P20-201ENST00000417997 RBM26Q5T8P6 1007 aaKnown RBP8.66□□□□□ -1.02
HMGB3P20-201ENST00000417997 RBM27Q9P2N5 1060 aaKnown RBP8.66□□□□□ -1.02
HMGB3P20-201ENST00000417997 C3orf80F5H4A9 247 aa8.65□□□□□ -1.02
HMGB3P20-201ENST00000417997 PTGDRQ13258 359 aa8.65□□□□□ -1.02
HMGB3P20-201ENST00000417997 LRCH3Q96II8 777 aa8.65□□□□□ -1.02
HMGB3P20-201ENST00000417997 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.65□□□□□ -1.02
HMGB3P20-201ENST00000417997 SOWAHBA6NEL2 793 aa8.64□□□□□ -1.03
HMGB3P20-201ENST00000417997 RNF40O75150 1001 aa8.63□□□□□ -1.03
HMGB3P20-201ENST00000417997 FCHSD2O94868 740 aa8.63□□□□□ -1.03
HMGB3P20-201ENST00000417997 PLA2G2EQ9NZK7 142 aa8.63□□□□□ -1.03
HMGB3P20-201ENST00000417997 HDGFP51858 240 aaKnown RBP8.62□□□□□ -1.03
HMGB3P20-201ENST00000417997 SAMD7Q7Z3H4 446 aa8.62□□□□□ -1.03
HMGB3P20-201ENST00000417997 HPS5Q9UPZ3 1129 aa8.62□□□□□ -1.03
HMGB3P20-201ENST00000417997 TULP1O00294 542 aaPredicted RBP8.61□□□□□ -1.03
HMGB3P20-201ENST00000417997 TTC13Q8NBP0 860 aa8.6□□□□□ -1.03
HMGB3P20-201ENST00000417997 WBP1LQ9NX94 342 aa8.6□□□□□ -1.03
HMGB3P20-201ENST00000417997 FAM161AQ3B820 660 aa8.59□□□□□ -1.03
HMGB3P20-201ENST00000417997 TSR3Q9UJK0 312 aaKnown RBP8.59□□□□□ -1.03
HMGB3P20-201ENST00000417997 PPP4CP60510 307 aa8.58□□□□□ -1.04
HMGB3P20-201ENST00000417997 GPIHBP1Q8IV16 184 aa8.57□□□□□ -1.04
HMGB3P20-201ENST00000417997 RBM46Q8TBY0 533 aaKnown RBP8.57□□□□□ -1.04
HMGB3P20-201ENST00000417997 HIC1Q14526 733 aa8.56□□□□□ -1.04
HMGB3P20-201ENST00000417997 SWT1Q5T5J6 900 aaKnown RBP8.56□□□□□ -1.04
HMGB3P20-201ENST00000417997 ADGRG1Q9Y653 693 aa8.56□□□□□ -1.04
HMGB3P20-201ENST00000417997 SLC4A3P48751 1232 aa8.55□□□□□ -1.04
HMGB3P20-201ENST00000417997 EYA1Q99502 592 aa8.55□□□□□ -1.04
HMGB3P20-201ENST00000417997 GNPATO15228 680 aa8.54□□□□□ -1.04
HMGB3P20-201ENST00000417997 NYAP1Q6ZVC0 841 aa8.54□□□□□ -1.04
HMGB3P20-201ENST00000417997 DNAJB2P25686 324 aa8.53□□□□□ -1.04
HMGB3P20-201ENST00000417997 FECHP22830 423 aa8.52□□□□□ -1.05
HMGB3P20-201ENST00000417997 SLF2Q8IX21 1173 aa8.52□□□□□ -1.05
HMGB3P20-201ENST00000417997 RCCD1A6NED2 376 aa8.51□□□□□ -1.05
HMGB3P20-201ENST00000417997 GPR37O15354 613 aa8.5□□□□□ -1.05
HMGB3P20-201ENST00000417997 OATP04181 439 aa8.5□□□□□ -1.05
HMGB3P20-201ENST00000417997 NECTIN2Q92692 538 aa8.48□□□□□ -1.05
HMGB3P20-201ENST00000417997 TMEM134Q9H6X4 195 aa8.48□□□□□ -1.05
HMGB3P20-201ENST00000417997 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.47□□□□□ -1.05
HMGB3P20-201ENST00000417997 METTL3Q86U44 580 aaKnown RBP8.47□□□□□ -1.05
HMGB3P20-201ENST00000417997 PXYLP1Q8TE99 480 aa8.47□□□□□ -1.05
HMGB3P20-201ENST00000417997 APLP1P51693 650 aa8.46□□□□□ -1.06
HMGB3P20-201ENST00000417997 KCNC4Q03721 635 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms