RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 ZNF326Q5BKZ1 582 aaKnown RBP13.21□□□□□ -0.29
CD44-206ENST00000415148 BRD4O60885 1362 aaPredicted RBP13.21□□□□□ -0.29
CD44-206ENST00000415148 TMC1Q8TDI8 760 aa13.21□□□□□ -0.3
CD44-206ENST00000415148 NOP58Q9Y2X3 529 aaKnown RBP13.21□□□□□ -0.3
CD44-206ENST00000415148 LRPPRCP42704 1394 aaKnown RBP13.2□□□□□ -0.3
CD44-206ENST00000415148 E9PCH4 1651 aa13.2□□□□□ -0.3
CD44-206ENST00000415148 MYT1LQ9UL68 1186 aa13.19□□□□□ -0.3
CD44-206ENST00000415148 MYBBP1AQ9BQG0 1328 aaKnown RBP13.19□□□□□ -0.3
CD44-206ENST00000415148 FBLN2P98095 1184 aa13.17□□□□□ -0.3
CD44-206ENST00000415148 CCDC141Q6ZP82 1450 aa13.17□□□□□ -0.3
CD44-206ENST00000415148 ST20-MTHFSA0A0A6YYL1 179 aa13.16□□□□□ -0.3
CD44-206ENST00000415148 FAM135AQ9P2D6 1515 aa13.16□□□□□ -0.3
CD44-206ENST00000415148 PREX2Q70Z35 1606 aa13.16□□□□□ -0.3
CD44-206ENST00000415148 DCAF11Q8TEB1 546 aa13.16□□□□□ -0.3
CD44-206ENST00000415148 CCDC136Q96JN2 1154 aa13.16□□□□□ -0.3
CD44-206ENST00000415148 MAST1Q9Y2H9 1570 aa13.15□□□□□ -0.3
CD44-206ENST00000415148 TRPM1Q7Z4N2 1603 aa13.15□□□□□ -0.3
CD44-206ENST00000415148 LAMC1P11047 1609 aa13.15□□□□□ -0.3
CD44-206ENST00000415148 SAMD9LQ8IVG5 1584 aa13.15□□□□□ -0.3
CD44-206ENST00000415148 CDC42BPBQ9Y5S2 1711 aa13.15□□□□□ -0.3
CD44-206ENST00000415148 HNRNPMP52272 730 aaKnown RBP eCLIP13.14□□□□□ -0.31
CD44-206ENST00000415148 WASHC2CQ9Y4E1 1318 aa13.14□□□□□ -0.31
CD44-206ENST00000415148 UNC13BO14795 1591 aa13.13□□□□□ -0.31
CD44-206ENST00000415148 PRAG1Q86YV5 1406 aa13.13□□□□□ -0.31
CD44-206ENST00000415148 INSRP06213 1382 aa13.13□□□□□ -0.31
CD44-206ENST00000415148 KDM2AQ9Y2K7 1162 aa13.13□□□□□ -0.31
CD44-206ENST00000415148 PDE3BQ13370 1112 aa13.13□□□□□ -0.31
CD44-206ENST00000415148 GPRASP1Q5JY77 1395 aa13.12□□□□□ -0.31
CD44-206ENST00000415148 CCDC144AA2RUR9 1427 aa13.11□□□□□ -0.31
CD44-206ENST00000415148 PARD3Q8TEW0 1356 aa13.11□□□□□ -0.31
CD44-206ENST00000415148 ZMYM4Q5VZL5 1548 aa13.11□□□□□ -0.31
CD44-206ENST00000415148 NLRP13Q86W25 1043 aa13.11□□□□□ -0.31
CD44-206ENST00000415148 SALL2Q9Y467 1007 aaPredicted RBP13.1□□□□□ -0.31
CD44-206ENST00000415148 IPO9Q96P70 1041 aaKnown RBP13.09□□□□□ -0.31
CD44-206ENST00000415148 EIF2AK4Q9P2K8 1649 aaKnown RBP13.09□□□□□ -0.31
CD44-206ENST00000415148 PLEKHH2Q8IVE3 1493 aa13.09□□□□□ -0.31
CD44-206ENST00000415148 PLXNC1O60486 1568 aa13.09□□□□□ -0.31
CD44-206ENST00000415148 IQGAP3Q86VI3 1631 aa13.08□□□□□ -0.32
CD44-206ENST00000415148 PER1O15534 1290 aaPredicted RBP13.08□□□□□ -0.32
CD44-206ENST00000415148 EXOC6Q8TAG9 804 aa13.08□□□□□ -0.32
CD44-206ENST00000415148 ATP10AO60312 1499 aa13.08□□□□□ -0.32
CD44-206ENST00000415148 PRDM15P57071 1507 aaPredicted RBP13.08□□□□□ -0.32
CD44-206ENST00000415148 SKAP1Q86WV1 359 aa13.07□□□□□ -0.32
CD44-206ENST00000415148 PLA2R1Q13018 1463 aa13.06□□□□□ -0.32
CD44-206ENST00000415148 COL17A1Q9UMD9 1497 aaPredicted RBP13.06□□□□□ -0.32
CD44-206ENST00000415148 RRP1P56182 461 aaKnown RBP13.06□□□□□ -0.32
CD44-206ENST00000415148 NPM2Q86SE8 214 aaKnown RBP13.06□□□□□ -0.32
CD44-206ENST00000415148 A2MP01023 1474 aa13.05□□□□□ -0.32
CD44-206ENST00000415148 ANP32AP39687 249 aaKnown RBP13.05□□□□□ -0.32
CD44-206ENST00000415148 SYCP2Q9BX26 1530 aa13.05□□□□□ -0.32
CD44-206ENST00000415148 RCAN3Q9UKA8 241 aa13.05□□□□□ -0.32
CD44-206ENST00000415148 ARHGAP5Q13017 1502 aa13.04□□□□□ -0.32
CD44-206ENST00000415148 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.04□□□□□ -0.32
CD44-206ENST00000415148 DUOX2Q9NRD8 1548 aa13.04□□□□□ -0.32
CD44-206ENST00000415148 MAGI2Q86UL8 1455 aa13.04□□□□□ -0.32
CD44-206ENST00000415148 ZBTB47Q9UFB7 747 aaPredicted RBP13.03□□□□□ -0.32
CD44-206ENST00000415148 MYO5CQ9NQX4 1742 aa13.03□□□□□ -0.32
CD44-206ENST00000415148 SHROOM2Q13796 1616 aa13.03□□□□□ -0.32
CD44-206ENST00000415148 TESK2Q96S53 571 aa13.02□□□□□ -0.32
CD44-206ENST00000415148 ERBINQ96RT1 1412 aa13.02□□□□□ -0.32
CD44-206ENST00000415148 NBPF1Q3BBV0 1214 aa13.02□□□□□ -0.33
CD44-206ENST00000415148 TTC37Q6PGP7 1564 aa13.02□□□□□ -0.33
CD44-206ENST00000415148 TCERG1O14776 1098 aaKnown RBP13.01□□□□□ -0.33
CD44-206ENST00000415148 CDCA7LQ96GN5 454 aa13.01□□□□□ -0.33
CD44-206ENST00000415148 BLMP54132 1417 aaPredicted RBP13.01□□□□□ -0.33
CD44-206ENST00000415148 TMF1P82094 1093 aa13.01□□□□□ -0.33
CD44-206ENST00000415148 RGL3Q3MIN7 710 aa13□□□□□ -0.33
CD44-206ENST00000415148 STAC3Q96MF2 364 aa13□□□□□ -0.33
CD44-206ENST00000415148 LAS1LQ9Y4W2 734 aaKnown RBP13□□□□□ -0.33
CD44-206ENST00000415148 RNF17Q9BXT8 1623 aaKnown RBP12.99□□□□□ -0.33
CD44-206ENST00000415148 PLIN1O60240 522 aa12.99□□□□□ -0.33
CD44-206ENST00000415148 MS4A1P11836 297 aa12.99□□□□□ -0.33
CD44-206ENST00000415148 ABCC2Q92887 1545 aa12.98□□□□□ -0.33
CD44-206ENST00000415148 DISP3Q9P2K9 1392 aa12.98□□□□□ -0.33
CD44-206ENST00000415148 PDE4AP27815 886 aa12.98□□□□□ -0.33
CD44-206ENST00000415148 PANK3Q9H999 370 aa12.98□□□□□ -0.33
CD44-206ENST00000415148 IL27Q8NEV9 243 aa12.97□□□□□ -0.33
CD44-206ENST00000415148 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.96□□□□□ -0.33
CD44-206ENST00000415148 PLCH2O75038 1416 aa12.96□□□□□ -0.33
CD44-206ENST00000415148 CHD1O14646 1710 aa12.96□□□□□ -0.33
CD44-206ENST00000415148 RTL5Q5HYW3 569 aaPredicted RBP12.94□□□□□ -0.34
CD44-206ENST00000415148 BACH2Q9BYV9 841 aa12.94□□□□□ -0.34
CD44-206ENST00000415148 IQGAP1P46940 1657 aa12.93□□□□□ -0.34
CD44-206ENST00000415148 CDCA8Q53HL2 280 aa12.93□□□□□ -0.34
CD44-206ENST00000415148 CC2D1BQ5T0F9 858 aaKnown RBP12.93□□□□□ -0.34
CD44-206ENST00000415148 EFCAB2Q5VUJ9 269 aa12.93□□□□□ -0.34
CD44-206ENST00000415148 SCAPERQ9BY12 1400 aa12.93□□□□□ -0.34
CD44-206ENST00000415148 ANO8Q9HCE9 1232 aaPredicted RBP12.92□□□□□ -0.34
CD44-206ENST00000415148 RTN4Q9NQC3 1192 aaKnown RBP12.92□□□□□ -0.34
CD44-206ENST00000415148 RTEL1-TNFRSF6BF6WH68 1400 aa12.92□□□□□ -0.34
CD44-206ENST00000415148 MADDQ8WXG6 1647 aa12.92□□□□□ -0.34
CD44-206ENST00000415148 UHRF1BP1LA0JNW5 1464 aa12.91□□□□□ -0.34
CD44-206ENST00000415148 WDR7Q9Y4E6 1490 aa12.91□□□□□ -0.34
CD44-206ENST00000415148 ABCC1P33527 1531 aa12.91□□□□□ -0.34
CD44-206ENST00000415148 C20orf194Q5TEA3 1177 aa12.91□□□□□ -0.34
CD44-206ENST00000415148 CRBNQ96SW2 442 aa12.91□□□□□ -0.34
CD44-206ENST00000415148 NEFMP07197 916 aa12.91□□□□□ -0.34
CD44-206ENST00000415148 TRPM2O94759 1503 aa12.9□□□□□ -0.34
CD44-206ENST00000415148 SYNMO15061 1565 aa12.9□□□□□ -0.34
CD44-206ENST00000415148 CEP152O94986 1710 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms