RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 DNAJC5BQ9UF47 199 aa15.39■□□□□ 0.05
PTPRF-205ENST00000414879 HDAC5Q9UQL6 1122 aa15.38■□□□□ 0.05
PTPRF-205ENST00000414879 SUPT6HQ7KZ85 1726 aaKnown RBP15.36■□□□□ 0.05
PTPRF-205ENST00000414879 ADAMTS12P58397 1594 aa15.36■□□□□ 0.05
PTPRF-205ENST00000414879 USP47Q96K76 1375 aa15.35■□□□□ 0.05
PTPRF-205ENST00000414879 U2AF1L5P0DN76 240 aaPredicted RBP15.35■□□□□ 0.05
PTPRF-205ENST00000414879 U2AF1Q01081 240 aaKnown RBP eCLIP15.35■□□□□ 0.05
PTPRF-205ENST00000414879 MYBBP1AQ9BQG0 1328 aaKnown RBP15.34■□□□□ 0.05
PTPRF-205ENST00000414879 PLEKHG5O94827 1062 aa15.34■□□□□ 0.05
PTPRF-205ENST00000414879 IRX6P78412 446 aaPredicted RBP15.34■□□□□ 0.05
PTPRF-205ENST00000414879 GRIN2AQ12879 1464 aa15.33■□□□□ 0.05
PTPRF-205ENST00000414879 FRAT1Q92837 279 aaPredicted RBP15.33■□□□□ 0.04
PTPRF-205ENST00000414879 CGNL1Q0VF96 1302 aa15.33■□□□□ 0.04
PTPRF-205ENST00000414879 NGDNQ8NEJ9 315 aaKnown RBP15.33■□□□□ 0.04
PTPRF-205ENST00000414879 ST20-MTHFSA0A0A6YYL1 179 aa15.32■□□□□ 0.04
PTPRF-205ENST00000414879 GOLGA6L22H0YM25 854 aa15.32■□□□□ 0.04
PTPRF-205ENST00000414879 ROCK1Q13464 1354 aa15.31■□□□□ 0.04
PTPRF-205ENST00000414879 C9orf84Q5VXU9 1444 aa15.31■□□□□ 0.04
PTPRF-205ENST00000414879 EPRSP07814 1512 aaKnown RBP15.31■□□□□ 0.04
PTPRF-205ENST00000414879 THOC2Q8NI27 1593 aaKnown RBP15.31■□□□□ 0.04
PTPRF-205ENST00000414879 TRAK1Q9UPV9 953 aa15.3■□□□□ 0.04
PTPRF-205ENST00000414879 ZNF644Q9H582 1327 aaPredicted RBP15.3■□□□□ 0.04
PTPRF-205ENST00000414879 PAK3O75914 559 aaPredicted RBP15.29■□□□□ 0.04
PTPRF-205ENST00000414879 NCLP19338 710 aaKnown RBP15.29■□□□□ 0.04
PTPRF-205ENST00000414879 GOLGA2Q08379 1002 aa15.27■□□□□ 0.04
PTPRF-205ENST00000414879 RCAN3Q9UKA8 241 aa15.26■□□□□ 0.03
PTPRF-205ENST00000414879 EIF4G3O43432 1585 aaKnown RBP15.26■□□□□ 0.03
PTPRF-205ENST00000414879 PCF11O94913 1555 aaKnown RBP15.26■□□□□ 0.03
PTPRF-205ENST00000414879 ARXQ96QS3 562 aa15.26■□□□□ 0.03
PTPRF-205ENST00000414879 CFAP43Q8NDM7 1665 aa15.25■□□□□ 0.03
PTPRF-205ENST00000414879 OS9Q13438 667 aaPredicted RBP15.25■□□□□ 0.03
PTPRF-205ENST00000414879 KIAA1107Q9UPP5 1409 aa15.25■□□□□ 0.03
PTPRF-205ENST00000414879 CENPJQ9HC77 1338 aaPredicted RBP15.25■□□□□ 0.03
PTPRF-205ENST00000414879 CSB-PGBD3P0DP91 1061 aa15.25■□□□□ 0.03
PTPRF-205ENST00000414879 SLC52A1Q9NWF4 448 aa15.25■□□□□ 0.03
PTPRF-205ENST00000414879 COG3Q96JB2 828 aa15.24■□□□□ 0.03
PTPRF-205ENST00000414879 SAMD9Q5K651 1589 aa15.24■□□□□ 0.03
PTPRF-205ENST00000414879 PANK3Q9H999 370 aa15.24■□□□□ 0.03
PTPRF-205ENST00000414879 STK31Q9BXU1 1019 aa15.24■□□□□ 0.03
PTPRF-205ENST00000414879 RPGRIP1LQ68CZ1 1315 aa15.24■□□□□ 0.03
PTPRF-205ENST00000414879 DAPK1P53355 1430 aa15.24■□□□□ 0.03
PTPRF-205ENST00000414879 SCAPERQ9BY12 1400 aa15.24■□□□□ 0.03
PTPRF-205ENST00000414879 AMPHP49418 695 aa15.23■□□□□ 0.03
PTPRF-205ENST00000414879 POGZQ7Z3K3 1410 aa15.23■□□□□ 0.03
PTPRF-205ENST00000414879 RWDD1Q9H446 243 aaPredicted RBP15.23■□□□□ 0.03
PTPRF-205ENST00000414879 SOX12O15370 315 aa15.22■□□□□ 0.03
PTPRF-205ENST00000414879 WASHC2AQ641Q2 1341 aa15.22■□□□□ 0.03
PTPRF-205ENST00000414879 AFAP1Q8N556 730 aa15.22■□□□□ 0.03
PTPRF-205ENST00000414879 PRKRIP1Q9H875 184 aaPredicted RBP15.21■□□□□ 0.03
PTPRF-205ENST00000414879 PMFBP1Q8TBY8 1022 aa15.21■□□□□ 0.03
PTPRF-205ENST00000414879 UGGT2Q9NYU1 1516 aa15.21■□□□□ 0.02
PTPRF-205ENST00000414879 ZNF608Q9ULD9 1512 aaPredicted RBP15.21■□□□□ 0.02
PTPRF-205ENST00000414879 CCDC141Q6ZP82 1450 aa15.21■□□□□ 0.02
PTPRF-205ENST00000414879 NPHP1O15259 732 aa15.2■□□□□ 0.02
PTPRF-205ENST00000414879 KIF14Q15058 1648 aa15.2■□□□□ 0.02
PTPRF-205ENST00000414879 MCCP23508 829 aa15.19■□□□□ 0.02
PTPRF-205ENST00000414879 HMMRO75330 724 aa15.18■□□□□ 0.02
PTPRF-205ENST00000414879 NUTM2DQ5VT03 806 aaPredicted RBP15.17■□□□□ 0.02
PTPRF-205ENST00000414879 CCDC7Q96M83 1385 aa15.17■□□□□ 0.02
PTPRF-205ENST00000414879 ANKRD30BQ9BXX2 1392 aa15.17■□□□□ 0.02
PTPRF-205ENST00000414879 E9PSI1 815 aa15.15■□□□□ 0.02
PTPRF-205ENST00000414879 CNTLNQ9NXG0 1405 aa15.14■□□□□ 0.01
PTPRF-205ENST00000414879 RGS3P49796 1198 aa15.14■□□□□ 0.01
PTPRF-205ENST00000414879 PPP6R1Q9UPN7 881 aa15.14■□□□□ 0.01
PTPRF-205ENST00000414879 ZBED9Q6R2W3 1325 aa15.13■□□□□ 0.01
PTPRF-205ENST00000414879 TCERG1O14776 1098 aaKnown RBP15.13■□□□□ 0.01
PTPRF-205ENST00000414879 THEMISQ8N1K5 641 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-205ENST00000414879 MINK1Q8N4C8 1332 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-205ENST00000414879 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.12■□□□□ 0.01
PTPRF-205ENST00000414879 CDK13Q14004 1512 aaKnown RBP15.12■□□□□ 0.01
PTPRF-205ENST00000414879 SMC4Q9NTJ3 1288 aa15.12■□□□□ 0.01
PTPRF-205ENST00000414879 CD109Q6YHK3 1445 aa15.11■□□□□ 0.01
PTPRF-205ENST00000414879 KCNJ4P48050 445 aa15.11■□□□□ 0.01
PTPRF-205ENST00000414879 KIAA0556O60303 1618 aa15.1■□□□□ 0.01
PTPRF-205ENST00000414879 DIAPH1O60610 1272 aaKnown RBP15.1■□□□□ 0.01
PTPRF-205ENST00000414879 ZRSR1Q15695 479 aaKnown RBP15.09■□□□□ 0.01
PTPRF-205ENST00000414879 CAMSAP2Q08AD1 1489 aa15.09■□□□□ 0.01
PTPRF-205ENST00000414879 AAMPQ13685 434 aa15.09■□□□□ 0.01
PTPRF-205ENST00000414879 NAIPQ13075 1403 aa15.09■□□□□ 0.01
PTPRF-205ENST00000414879 AKNAQ7Z591 1439 aa15.09■□□□□ 0.01
PTPRF-205ENST00000414879 ITPRIPQ8IWB1 547 aa15.09■□□□□ 0.01
PTPRF-205ENST00000414879 PLB1Q6P1J6 1458 aa15.09■□□□□ 0.01
PTPRF-205ENST00000414879 GPATCH3Q96I76 525 aa15.09■□□□□ 0.01
PTPRF-205ENST00000414879 PTPN23Q9H3S7 1636 aa15.09■□□□□ 0.01
PTPRF-205ENST00000414879 BRD4O60885 1362 aaPredicted RBP15.08■□□□□ 0.01
PTPRF-205ENST00000414879 KIF7Q2M1P5 1343 aa15.08■□□□□ 0.01
PTPRF-205ENST00000414879 B4GALNT3Q6L9W6 998 aa15.08■□□□□ 0
PTPRF-205ENST00000414879 C1orf141Q5JVX7 400 aa15.07■□□□□ 0
PTPRF-205ENST00000414879 SENP3-EIF4A1A0A087X0R7 540 aa15.07■□□□□ 0
PTPRF-205ENST00000414879 FGD1P98174 961 aa15.07■□□□□ 0
PTPRF-205ENST00000414879 HSCBQ8IWL3 235 aa15.07■□□□□ 0
PTPRF-205ENST00000414879 NUP160Q12769 1436 aa15.06■□□□□ 0
PTPRF-205ENST00000414879 ARHGEF11O15085 1522 aa15.06■□□□□ 0
PTPRF-205ENST00000414879 HSP90AB1P08238 724 aaKnown RBP15.05■□□□□ 0
PTPRF-205ENST00000414879 PSME1Q06323 249 aa15.05■□□□□ 0
PTPRF-205ENST00000414879 KIAA1211Q6ZU35 1233 aa15.05■□□□□ 0
PTPRF-205ENST00000414879 ATF3P18847 181 aa15.05■□□□□ -0
PTPRF-205ENST00000414879 ADGRL1O94910 1474 aa15.05■□□□□ -0
PTPRF-205ENST00000414879 PTMSP20962 102 aa15.04■□□□□ -0
PTPRF-205ENST00000414879 RUNDC1Q96C34 613 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms