RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 NUTM2FA1L443 756 aa21.8■■□□□ 1.08
PHRF1-202ENST00000413872 GOLGA6L4A6NEF3 574 aa21.8■■□□□ 1.08
PHRF1-202ENST00000413872 FYCO1Q9BQS8 1478 aa21.8■■□□□ 1.08
PHRF1-202ENST00000413872 PANK3Q9H999 370 aa21.79■■□□□ 1.08
PHRF1-202ENST00000413872 GPATCH3Q96I76 525 aa21.78■■□□□ 1.08
PHRF1-202ENST00000413872 ERICH3Q5RHP9 1530 aa21.78■■□□□ 1.08
PHRF1-202ENST00000413872 USP47Q96K76 1375 aa21.77■■□□□ 1.08
PHRF1-202ENST00000413872 CENPJQ9HC77 1338 aaPredicted RBP21.77■■□□□ 1.08
PHRF1-202ENST00000413872 LTV1Q96GA3 475 aaPredicted RBP21.77■■□□□ 1.08
PHRF1-202ENST00000413872 GOLGA6L6A8MZA4 724 aa21.76■■□□□ 1.07
PHRF1-202ENST00000413872 PRDM2Q13029 1718 aa21.76■■□□□ 1.07
PHRF1-202ENST00000413872 TAF7LQ5H9L4 462 aa21.75■■□□□ 1.07
PHRF1-202ENST00000413872 GORABQ5T7V8 394 aa21.75■■□□□ 1.07
PHRF1-202ENST00000413872 APBB1O00213 710 aa21.74■■□□□ 1.07
PHRF1-202ENST00000413872 LRRC9Q6ZRR7 1453 aa21.74■■□□□ 1.07
PHRF1-202ENST00000413872 NRDCO43847 1150 aa21.74■■□□□ 1.07
PHRF1-202ENST00000413872 PRG4Q92954 1404 aaPredicted RBP21.74■■□□□ 1.07
PHRF1-202ENST00000413872 ANKRD50Q9ULJ7 1429 aa21.74■■□□□ 1.07
PHRF1-202ENST00000413872 NOP58Q9Y2X3 529 aaKnown RBP21.73■■□□□ 1.07
PHRF1-202ENST00000413872 MINK1Q8N4C8 1332 aaPredicted RBP21.73■■□□□ 1.07
PHRF1-202ENST00000413872 TAOK2Q9UL54 1235 aa21.72■■□□□ 1.07
PHRF1-202ENST00000413872 CC2D2AQ9P2K1 1620 aa21.72■■□□□ 1.07
PHRF1-202ENST00000413872 CCDC146Q8IYE0 955 aa21.72■■□□□ 1.07
PHRF1-202ENST00000413872 NGEFQ8N5V2 710 aa21.72■■□□□ 1.07
PHRF1-202ENST00000413872 TPRNQ4KMQ1 711 aa21.72■■□□□ 1.07
PHRF1-202ENST00000413872 C1orf141Q5JVX7 400 aa21.72■■□□□ 1.07
PHRF1-202ENST00000413872 KIF21BO75037 1637 aa21.71■■□□□ 1.07
PHRF1-202ENST00000413872 GLIPR1L2Q4G1C9 344 aa21.71■■□□□ 1.07
PHRF1-202ENST00000413872 NCOA2Q15596 1464 aa21.7■■□□□ 1.06
PHRF1-202ENST00000413872 TCERG1O14776 1098 aaKnown RBP21.7■■□□□ 1.06
PHRF1-202ENST00000413872 ARHGAP5Q13017 1502 aa21.69■■□□□ 1.06
PHRF1-202ENST00000413872 EFCAB5A4FU69 1503 aa21.69■■□□□ 1.06
PHRF1-202ENST00000413872 CHMP3Q9Y3E7 222 aa21.69■■□□□ 1.06
PHRF1-202ENST00000413872 ZNF644Q9H582 1327 aaPredicted RBP21.68■■□□□ 1.06
PHRF1-202ENST00000413872 EVA1CP58658 441 aa21.67■■□□□ 1.06
PHRF1-202ENST00000413872 TOPBP1Q92547 1522 aa21.67■■□□□ 1.06
PHRF1-202ENST00000413872 SLC4A10Q6U841 1118 aa21.67■■□□□ 1.06
PHRF1-202ENST00000413872 ISY1Q9ULR0 285 aaKnown RBP21.67■■□□□ 1.06
PHRF1-202ENST00000413872 PLEKHH2Q8IVE3 1493 aa21.67■■□□□ 1.06
PHRF1-202ENST00000413872 NESP48681 1621 aa21.65■■□□□ 1.06
PHRF1-202ENST00000413872 TEFQ10587 303 aa21.65■■□□□ 1.06
PHRF1-202ENST00000413872 GNL2Q13823 731 aaKnown RBP21.65■■□□□ 1.06
PHRF1-202ENST00000413872 GTF2E1P29083 439 aaPredicted RBP21.64■■□□□ 1.06
PHRF1-202ENST00000413872 TULP1O00294 542 aaPredicted RBP21.64■■□□□ 1.05
PHRF1-202ENST00000413872 PSME1Q06323 249 aa21.64■■□□□ 1.05
PHRF1-202ENST00000413872 E9PSI1 815 aa21.63■■□□□ 1.05
PHRF1-202ENST00000413872 MIA2Q96PC5 1412 aa21.62■■□□□ 1.05
PHRF1-202ENST00000413872 PRKRIP1Q9H875 184 aaPredicted RBP21.62■■□□□ 1.05
PHRF1-202ENST00000413872 PTMSP20962 102 aa21.62■■□□□ 1.05
PHRF1-202ENST00000413872 PLCB2Q00722 1185 aa21.62■■□□□ 1.05
PHRF1-202ENST00000413872 HTATSF1O43719 755 aaKnown RBP21.62■■□□□ 1.05
PHRF1-202ENST00000413872 DNTTIP2Q5QJE6 756 aaKnown RBP21.62■■□□□ 1.05
PHRF1-202ENST00000413872 DIAPH1O60610 1272 aaKnown RBP21.61■■□□□ 1.05
PHRF1-202ENST00000413872 CLUAP1Q96AJ1 413 aa21.6■■□□□ 1.05
PHRF1-202ENST00000413872 POLA1P09884 1462 aaPredicted RBP21.6■■□□□ 1.05
PHRF1-202ENST00000413872 RRBP1Q9P2E9 1410 aaKnown RBP21.59■■□□□ 1.05
PHRF1-202ENST00000413872 G3V3G9 751 aa21.59■■□□□ 1.05
PHRF1-202ENST00000413872 ATF3P18847 181 aa21.59■■□□□ 1.05
PHRF1-202ENST00000413872 DCAF8Q5TAQ9 597 aa21.59■■□□□ 1.05
PHRF1-202ENST00000413872 TTC5Q8N0Z6 440 aa21.58■■□□□ 1.05
PHRF1-202ENST00000413872 AFAP1Q8N556 730 aa21.58■■□□□ 1.05
PHRF1-202ENST00000413872 TOP2BQ02880 1626 aa21.58■■□□□ 1.04
PHRF1-202ENST00000413872 SYNJ1O43426 1573 aa21.58■■□□□ 1.04
PHRF1-202ENST00000413872 TRIM6-TRIM34B2RNG4 842 aa21.57■■□□□ 1.04
PHRF1-202ENST00000413872 DNMBPQ6XZF7 1577 aa21.57■■□□□ 1.04
PHRF1-202ENST00000413872 RRP7AQ9Y3A4 280 aaKnown RBP21.56■■□□□ 1.04
PHRF1-202ENST00000413872 GBP4Q96PP9 640 aa21.55■■□□□ 1.04
PHRF1-202ENST00000413872 SNAPC4Q5SXM2 1469 aa21.55■■□□□ 1.04
PHRF1-202ENST00000413872 EHBP1L1Q8N3D4 1523 aa21.54■■□□□ 1.04
PHRF1-202ENST00000413872 NEXNQ0ZGT2 675 aa21.54■■□□□ 1.04
PHRF1-202ENST00000413872 HFM1A2PYH4 1435 aa21.54■■□□□ 1.04
PHRF1-202ENST00000413872 ZKSCAN2Q63HK3 967 aa21.54■■□□□ 1.04
PHRF1-202ENST00000413872 TROQ12816 1431 aaPredicted RBP21.54■■□□□ 1.04
PHRF1-202ENST00000413872 PRXQ9BXM0 1461 aa21.53■■□□□ 1.04
PHRF1-202ENST00000413872 AEBP2Q6ZN18 517 aaPredicted RBP21.51■■□□□ 1.03
PHRF1-202ENST00000413872 CCDC34Q96HJ3 373 aa21.51■■□□□ 1.03
PHRF1-202ENST00000413872 FRAT2O75474 233 aaPredicted RBP21.51■■□□□ 1.03
PHRF1-202ENST00000413872 ARAP1Q96P48 1450 aa21.5■■□□□ 1.03
PHRF1-202ENST00000413872 ZBED9Q6R2W3 1325 aa21.49■■□□□ 1.03
PHRF1-202ENST00000413872 L1TD1Q5T7N2 865 aaKnown RBP21.49■■□□□ 1.03
PHRF1-202ENST00000413872 HECW1Q76N89 1606 aa21.48■■□□□ 1.03
PHRF1-202ENST00000413872 DDX58O95786 925 aaKnown RBP21.47■■□□□ 1.03
PHRF1-202ENST00000413872 LRRFIP1Q32MZ4 808 aaKnown RBP21.47■■□□□ 1.03
PHRF1-202ENST00000413872 API5Q9BZZ5 524 aaKnown RBP21.47■■□□□ 1.03
PHRF1-202ENST00000413872 C9orf84Q5VXU9 1444 aa21.47■■□□□ 1.03
PHRF1-202ENST00000413872 CHMP4CQ96CF2 233 aa21.47■■□□□ 1.03
PHRF1-202ENST00000413872 KIF3AQ9Y496 699 aa21.47■■□□□ 1.03
PHRF1-202ENST00000413872 RAPGEF4Q8WZA2 1011 aa21.46■■□□□ 1.03
PHRF1-202ENST00000413872 APAF1O14727 1248 aa21.46■■□□□ 1.03
PHRF1-202ENST00000413872 THEMISQ8N1K5 641 aaPredicted RBP21.46■■□□□ 1.03
PHRF1-202ENST00000413872 SLC52A1Q9NWF4 448 aa21.46■■□□□ 1.03
PHRF1-202ENST00000413872 KIAA0586Q9BVV6 1533 aa21.46■■□□□ 1.03
PHRF1-202ENST00000413872 ELL2O00472 640 aaPredicted RBP21.46■■□□□ 1.03
PHRF1-202ENST00000413872 MFAP1P55081 439 aaKnown RBP21.46■■□□□ 1.03
PHRF1-202ENST00000413872 RUNDC1Q96C34 613 aa21.46■■□□□ 1.03
PHRF1-202ENST00000413872 LAMC3Q9Y6N6 1575 aa21.45■■□□□ 1.03
PHRF1-202ENST00000413872 TXNDC2Q86VQ3 553 aa21.45■■□□□ 1.02
PHRF1-202ENST00000413872 SPRYD3Q8NCJ5 442 aa21.45■■□□□ 1.02
PHRF1-202ENST00000413872 SYAP1Q96A49 352 aaPredicted RBP21.44■■□□□ 1.02
PHRF1-202ENST00000413872 CCDC7Q96M83 1385 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms