RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 IQGAP3Q86VI3 1631 aa7.81□□□□□ -1.16
CCDC88A-203ENST00000412148 CCDC184Q52MB2 194 aa7.81□□□□□ -1.16
CCDC88A-203ENST00000412148 BCL11AQ9H165 835 aa7.81□□□□□ -1.16
CCDC88A-203ENST00000412148 NUDCQ9Y266 331 aa7.81□□□□□ -1.16
CCDC88A-203ENST00000412148 ANKRD50Q9ULJ7 1429 aa7.8□□□□□ -1.16
CCDC88A-203ENST00000412148 KIF15Q9NS87 1388 aa7.8□□□□□ -1.16
CCDC88A-203ENST00000412148 PRDM15P57071 1507 aaPredicted RBP7.8□□□□□ -1.16
CCDC88A-203ENST00000412148 ZNF608Q9ULD9 1512 aaPredicted RBP7.8□□□□□ -1.16
CCDC88A-203ENST00000412148 CARMIL2Q6F5E8 1435 aa7.79□□□□□ -1.16
CCDC88A-203ENST00000412148 CHIC2Q9UKJ5 165 aa7.79□□□□□ -1.16
CCDC88A-203ENST00000412148 ATP10AO60312 1499 aa7.79□□□□□ -1.16
CCDC88A-203ENST00000412148 PLEKHH2Q8IVE3 1493 aa7.79□□□□□ -1.16
CCDC88A-203ENST00000412148 GPRASP1Q5JY77 1395 aa7.78□□□□□ -1.16
CCDC88A-203ENST00000412148 MAGI2Q86UL8 1455 aa7.78□□□□□ -1.16
CCDC88A-203ENST00000412148 PRG4Q92954 1404 aaPredicted RBP7.78□□□□□ -1.16
CCDC88A-203ENST00000412148 WASHC2CQ9Y4E1 1318 aa7.78□□□□□ -1.16
CCDC88A-203ENST00000412148 C9orf84Q5VXU9 1444 aa7.78□□□□□ -1.16
CCDC88A-203ENST00000412148 NEURL4Q96JN8 1562 aa7.77□□□□□ -1.17
CCDC88A-203ENST00000412148 RALBP1Q15311 655 aa7.77□□□□□ -1.17
CCDC88A-203ENST00000412148 PNISRQ8TF01 805 aaKnown RBP7.77□□□□□ -1.17
CCDC88A-203ENST00000412148 SAMD9LQ8IVG5 1584 aa7.77□□□□□ -1.17
CCDC88A-203ENST00000412148 FAM135AQ9P2D6 1515 aa7.76□□□□□ -1.17
CCDC88A-203ENST00000412148 PLB1Q6P1J6 1458 aa7.76□□□□□ -1.17
CCDC88A-203ENST00000412148 CLASP1Q7Z460 1538 aa7.76□□□□□ -1.17
CCDC88A-203ENST00000412148 PDE3BQ13370 1112 aa7.76□□□□□ -1.17
CCDC88A-203ENST00000412148 SHROOM2Q13796 1616 aa7.76□□□□□ -1.17
CCDC88A-203ENST00000412148 PARD3Q8TEW0 1356 aa7.76□□□□□ -1.17
CCDC88A-203ENST00000412148 KIAA1210Q9ULL0 1709 aa7.76□□□□□ -1.17
CCDC88A-203ENST00000412148 IQGAP1P46940 1657 aa7.75□□□□□ -1.17
CCDC88A-203ENST00000412148 CCDC141Q6ZP82 1450 aa7.75□□□□□ -1.17
CCDC88A-203ENST00000412148 ATP10BO94823 1461 aa7.75□□□□□ -1.17
CCDC88A-203ENST00000412148 COL17A1Q9UMD9 1497 aaPredicted RBP7.75□□□□□ -1.17
CCDC88A-203ENST00000412148 BLMP54132 1417 aaPredicted RBP7.75□□□□□ -1.17
CCDC88A-203ENST00000412148 MYBBP1AQ9BQG0 1328 aaKnown RBP7.75□□□□□ -1.17
CCDC88A-203ENST00000412148 RSPH4AQ5TD94 716 aa7.74□□□□□ -1.17
CCDC88A-203ENST00000412148 CFDP1Q9UEE9 299 aaPredicted RBP7.74□□□□□ -1.17
CCDC88A-203ENST00000412148 PRAG1Q86YV5 1406 aa7.74□□□□□ -1.17
CCDC88A-203ENST00000412148 ZNF644Q9H582 1327 aaPredicted RBP7.74□□□□□ -1.17
CCDC88A-203ENST00000412148 FAM9BQ8IZU0 186 aa7.74□□□□□ -1.17
CCDC88A-203ENST00000412148 VIRMAQ69YN4 1812 aaKnown RBP7.74□□□□□ -1.17
CCDC88A-203ENST00000412148 CEP152O94986 1710 aa7.74□□□□□ -1.17
CCDC88A-203ENST00000412148 ERICH6Q7L0X2 663 aa7.73□□□□□ -1.17
CCDC88A-203ENST00000412148 SPHKAPQ2M3C7 1700 aa7.73□□□□□ -1.17
CCDC88A-203ENST00000412148 NOP58Q9Y2X3 529 aaKnown RBP7.72□□□□□ -1.17
CCDC88A-203ENST00000412148 PKD2Q13563 968 aa7.72□□□□□ -1.17
CCDC88A-203ENST00000412148 MS4A1P11836 297 aa7.71□□□□□ -1.17
CCDC88A-203ENST00000412148 MAPK8IP2Q13387 824 aaPredicted RBP7.71□□□□□ -1.17
CCDC88A-203ENST00000412148 B4GALNT3Q6L9W6 998 aa7.71□□□□□ -1.17
CCDC88A-203ENST00000412148 DEPDC5O75140 1603 aa7.71□□□□□ -1.18
CCDC88A-203ENST00000412148 DUOX2Q9NRD8 1548 aa7.71□□□□□ -1.18
CCDC88A-203ENST00000412148 SYNMO15061 1565 aa7.71□□□□□ -1.18
CCDC88A-203ENST00000412148 IRX6P78412 446 aaPredicted RBP7.71□□□□□ -1.18
CCDC88A-203ENST00000412148 FBLN2P98095 1184 aa7.71□□□□□ -1.18
CCDC88A-203ENST00000412148 IPO9Q96P70 1041 aaKnown RBP7.7□□□□□ -1.18
CCDC88A-203ENST00000412148 ARAP3Q8WWN8 1544 aa7.7□□□□□ -1.18
CCDC88A-203ENST00000412148 NUP155O75694 1391 aa7.7□□□□□ -1.18
CCDC88A-203ENST00000412148 MADDQ8WXG6 1647 aa7.7□□□□□ -1.18
CCDC88A-203ENST00000412148 TCERG1O14776 1098 aaKnown RBP7.69□□□□□ -1.18
CCDC88A-203ENST00000412148 ERBINQ96RT1 1412 aa7.69□□□□□ -1.18
CCDC88A-203ENST00000412148 A2MP01023 1474 aa7.69□□□□□ -1.18
CCDC88A-203ENST00000412148 NLRP13Q86W25 1043 aa7.69□□□□□ -1.18
CCDC88A-203ENST00000412148 CCDC136Q96JN2 1154 aa7.69□□□□□ -1.18
CCDC88A-203ENST00000412148 MYOM1P52179 1685 aa7.68□□□□□ -1.18
CCDC88A-203ENST00000412148 PLA2R1Q13018 1463 aa7.68□□□□□ -1.18
CCDC88A-203ENST00000412148 ANP32AP39687 249 aaKnown RBP7.68□□□□□ -1.18
CCDC88A-203ENST00000412148 RRP1P56182 461 aaKnown RBP7.68□□□□□ -1.18
CCDC88A-203ENST00000412148 TMC1Q8TDI8 760 aa7.68□□□□□ -1.18
CCDC88A-203ENST00000412148 KDM2AQ9Y2K7 1162 aa7.68□□□□□ -1.18
CCDC88A-203ENST00000412148 TTC37Q6PGP7 1564 aa7.68□□□□□ -1.18
CCDC88A-203ENST00000412148 PER1O15534 1290 aaPredicted RBP7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 STAC3Q96MF2 364 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 USP35Q9P2H5 1018 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 ABCC2Q92887 1545 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 ERCC6Q03468 1493 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 CCDC144AA2RUR9 1427 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 PLEKHD1A6NEE1 506 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 ARXQ96QS3 562 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 CARD11Q9BXL7 1154 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 IFT172Q9UG01 1749 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 NPC1L1Q9UHC9 1359 aa7.67□□□□□ -1.18
CCDC88A-203ENST00000412148 TRPM2O94759 1503 aa7.66□□□□□ -1.18
CCDC88A-203ENST00000412148 MYO3AQ8NEV4 1616 aa7.66□□□□□ -1.18
CCDC88A-203ENST00000412148 SYCP2Q9BX26 1530 aa7.66□□□□□ -1.18
CCDC88A-203ENST00000412148 TET3O43151 1660 aa7.66□□□□□ -1.18
CCDC88A-203ENST00000412148 SCAPERQ9BY12 1400 aa7.66□□□□□ -1.18
CCDC88A-203ENST00000412148 JPH4Q96JJ6 628 aa7.65□□□□□ -1.18
CCDC88A-203ENST00000412148 CHD1O14646 1710 aa7.65□□□□□ -1.18
CCDC88A-203ENST00000412148 TSPY4P0CV99 314 aa7.65□□□□□ -1.18
CCDC88A-203ENST00000412148 TSPY10P0CW01 314 aa7.65□□□□□ -1.18
CCDC88A-203ENST00000412148 VWDEQ8N2E2 1590 aa7.65□□□□□ -1.19
CCDC88A-203ENST00000412148 KDM5AP29375 1690 aaKnown RBP7.65□□□□□ -1.19
CCDC88A-203ENST00000412148 ABCC1P33527 1531 aa7.64□□□□□ -1.19
CCDC88A-203ENST00000412148 ST20-MTHFSA0A0A6YYL1 179 aa7.64□□□□□ -1.19
CCDC88A-203ENST00000412148 RCAN3Q9UKA8 241 aa7.64□□□□□ -1.19
CCDC88A-203ENST00000412148 DEKP35659 375 aaKnown RBP7.64□□□□□ -1.19
CCDC88A-203ENST00000412148 WDR7Q9Y4E6 1490 aa7.64□□□□□ -1.19
CCDC88A-203ENST00000412148 PIK3C2GO75747 1445 aa7.63□□□□□ -1.19
CCDC88A-203ENST00000412148 UHRF1BP1LA0JNW5 1464 aa7.63□□□□□ -1.19
CCDC88A-203ENST00000412148 DNAJC5BQ9UF47 199 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms