RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 SLKQ9H2G2 1235 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-210ENST00000409694 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.67□□□□□ -0.86
SYNE1-210ENST00000409694 ODF2Q5BJF6 829 aa9.67□□□□□ -0.86
SYNE1-210ENST00000409694 RALBP1Q15311 655 aa9.67□□□□□ -0.86
SYNE1-210ENST00000409694 APPP05067 770 aa9.67□□□□□ -0.86
SYNE1-210ENST00000409694 IPO9Q96P70 1041 aaKnown RBP9.67□□□□□ -0.86
SYNE1-210ENST00000409694 CHMP3Q9Y3E7 222 aa9.67□□□□□ -0.86
SYNE1-210ENST00000409694 SYNE3Q6ZMZ3 975 aa9.66□□□□□ -0.86
SYNE1-210ENST00000409694 FAM184AQ8NB25 1140 aa9.66□□□□□ -0.86
SYNE1-210ENST00000409694 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-210ENST00000409694 CEP162Q5TB80 1403 aa9.66□□□□□ -0.86
SYNE1-210ENST00000409694 TIMELESSQ9UNS1 1208 aa9.66□□□□□ -0.86
SYNE1-210ENST00000409694 PCMTD1Q96MG8 357 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-210ENST00000409694 TRIM29Q14134 588 aa9.66□□□□□ -0.86
SYNE1-210ENST00000409694 TRIM34Q9BYJ4 488 aa9.66□□□□□ -0.86
SYNE1-210ENST00000409694 NOL10Q9BSC4 688 aaKnown RBP9.66□□□□□ -0.86
SYNE1-210ENST00000409694 MFAP1P55081 439 aaKnown RBP9.65□□□□□ -0.86
SYNE1-210ENST00000409694 CAGE1Q8TC20 777 aa9.65□□□□□ -0.86
SYNE1-210ENST00000409694 CCDC66A2RUB6 948 aa9.65□□□□□ -0.86
SYNE1-210ENST00000409694 CT47A1Q5JQC4 288 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-210ENST00000409694 RBM19Q9Y4C8 960 aaKnown RBP9.65□□□□□ -0.86
SYNE1-210ENST00000409694 KCNH8Q96L42 1107 aa9.65□□□□□ -0.86
SYNE1-210ENST00000409694 RCAN3Q9UKA8 241 aa9.65□□□□□ -0.87
SYNE1-210ENST00000409694 CPLX2Q6PUV4 134 aaKnown RBP9.65□□□□□ -0.87
SYNE1-210ENST00000409694 CTDP1Q9Y5B0 961 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-210ENST00000409694 CCNB3Q8WWL7 1395 aa9.64□□□□□ -0.87
SYNE1-210ENST00000409694 APBB1O00213 710 aa9.64□□□□□ -0.87
SYNE1-210ENST00000409694 ANKRD18AQ8IVF6 992 aa9.64□□□□□ -0.87
SYNE1-210ENST00000409694 INCENPQ9NQS7 918 aa9.64□□□□□ -0.87
SYNE1-210ENST00000409694 SENP3Q9H4L4 574 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-210ENST00000409694 CCP110O43303 1012 aa9.63□□□□□ -0.87
SYNE1-210ENST00000409694 H0YHG0 523 aa9.63□□□□□ -0.87
SYNE1-210ENST00000409694 HOMER1Q86YM7 354 aa9.63□□□□□ -0.87
SYNE1-210ENST00000409694 CCDC43Q96MW1 224 aaKnown RBP9.63□□□□□ -0.87
SYNE1-210ENST00000409694 NAT10Q9H0A0 1025 aaKnown RBP9.63□□□□□ -0.87
SYNE1-210ENST00000409694 KIF27Q86VH2 1401 aa9.63□□□□□ -0.87
SYNE1-210ENST00000409694 GOLGA6L7A0A1B0GV03 622 aa9.63□□□□□ -0.87
SYNE1-210ENST00000409694 RB1CC1Q8TDY2 1594 aa9.62□□□□□ -0.87
SYNE1-210ENST00000409694 ARHGAP35Q9NRY4 1499 aa9.62□□□□□ -0.87
SYNE1-210ENST00000409694 FRAT2O75474 233 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-210ENST00000409694 STK11IPQ8N1F8 1099 aa9.62□□□□□ -0.87
SYNE1-210ENST00000409694 ROCK1Q13464 1354 aa9.62□□□□□ -0.87
SYNE1-210ENST00000409694 EPS15P42566 896 aa9.62□□□□□ -0.87
SYNE1-210ENST00000409694 TOMM22Q9NS69 142 aa9.62□□□□□ -0.87
SYNE1-210ENST00000409694 DHX8Q14562 1220 aaKnown RBP9.61□□□□□ -0.87
SYNE1-210ENST00000409694 ROCK2O75116 1388 aaKnown RBP9.61□□□□□ -0.87
SYNE1-210ENST00000409694 RUFY2Q8WXA3 655 aa9.61□□□□□ -0.87
SYNE1-210ENST00000409694 ZNF592Q92610 1267 aa9.61□□□□□ -0.87
SYNE1-210ENST00000409694 SMC4Q9NTJ3 1288 aa9.61□□□□□ -0.87
SYNE1-210ENST00000409694 FBXO3Q9UK99 471 aa9.61□□□□□ -0.87
SYNE1-210ENST00000409694 WWC1Q8IX03 1113 aa9.6□□□□□ -0.87
SYNE1-210ENST00000409694 CSB-PGBD3P0DP91 1061 aa9.6□□□□□ -0.87
SYNE1-210ENST00000409694 HSP90AB2PQ58FF8 381 aa9.6□□□□□ -0.87
SYNE1-210ENST00000409694 MNS1Q8NEH6 495 aa9.6□□□□□ -0.87
SYNE1-210ENST00000409694 DIAPH3Q9NSV4 1193 aa9.6□□□□□ -0.87
SYNE1-210ENST00000409694 ZNF330Q9Y3S2 320 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-210ENST00000409694 TXLNBQ8N3L3 684 aa9.59□□□□□ -0.87
SYNE1-210ENST00000409694 ERLIN2O94905 339 aa9.59□□□□□ -0.87
SYNE1-210ENST00000409694 NAP1L1P55209 391 aaKnown RBP9.59□□□□□ -0.87
SYNE1-210ENST00000409694 REC8O95072 547 aa9.59□□□□□ -0.87
SYNE1-210ENST00000409694 DDX49Q9Y6V7 483 aaKnown RBP9.59□□□□□ -0.87
SYNE1-210ENST00000409694 VSIG10Q8N0Z9 540 aa9.59□□□□□ -0.87
SYNE1-210ENST00000409694 LEKR1Q6ZMV7 388 aa9.58□□□□□ -0.88
SYNE1-210ENST00000409694 R3HCC1Q9Y3T6 440 aaKnown RBP9.58□□□□□ -0.88
SYNE1-210ENST00000409694 CENPJQ9HC77 1338 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-210ENST00000409694 PDE3BQ13370 1112 aa9.58□□□□□ -0.88
SYNE1-210ENST00000409694 CGNL1Q0VF96 1302 aa9.58□□□□□ -0.88
SYNE1-210ENST00000409694 DCAF11Q8TEB1 546 aa9.57□□□□□ -0.88
SYNE1-210ENST00000409694 TERF2IPQ9NYB0 399 aa9.57□□□□□ -0.88
SYNE1-210ENST00000409694 GOLGA6L10A6NI86 522 aa9.57□□□□□ -0.88
SYNE1-210ENST00000409694 RNF20Q5VTR2 975 aa9.57□□□□□ -0.88
SYNE1-210ENST00000409694 KIF7Q2M1P5 1343 aa9.57□□□□□ -0.88
SYNE1-210ENST00000409694 GSE1Q14687 1217 aa9.57□□□□□ -0.88
SYNE1-210ENST00000409694 BRMS1Q9HCU9 246 aa9.57□□□□□ -0.88
SYNE1-210ENST00000409694 ZKSCAN1P17029 563 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-210ENST00000409694 MCTP1Q6DN14 999 aa9.57□□□□□ -0.88
SYNE1-210ENST00000409694 EIF4G1Q04637 1599 aaKnown RBP9.57□□□□□ -0.88
SYNE1-210ENST00000409694 U2AF1L5P0DN76 240 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-210ENST00000409694 U2AF1Q01081 240 aaKnown RBP eCLIP9.57□□□□□ -0.88
SYNE1-210ENST00000409694 ERICH2A1L162 156 aa9.57□□□□□ -0.88
SYNE1-210ENST00000409694 SASS6Q6UVJ0 657 aa9.56□□□□□ -0.88
SYNE1-210ENST00000409694 OLFM4Q6UX06 510 aa9.56□□□□□ -0.88
SYNE1-210ENST00000409694 EZRP15311 586 aaKnown RBP9.56□□□□□ -0.88
SYNE1-210ENST00000409694 RABEP1Q15276 862 aa9.56□□□□□ -0.88
SYNE1-210ENST00000409694 WWC2Q6AWC2 1192 aa9.56□□□□□ -0.88
SYNE1-210ENST00000409694 USP8P40818 1118 aa9.56□□□□□ -0.88
SYNE1-210ENST00000409694 LETM1O95202 739 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-210ENST00000409694 CENPQQ7L2Z9 268 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-210ENST00000409694 GTF2E1P29083 439 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-210ENST00000409694 ERCC6Q03468 1493 aa9.55□□□□□ -0.88
SYNE1-210ENST00000409694 PAK3O75914 559 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-210ENST00000409694 CCDC39Q9UFE4 941 aa9.55□□□□□ -0.88
SYNE1-210ENST00000409694 SAFBQ15424 915 aaKnown RBP eCLIP9.55□□□□□ -0.88
SYNE1-210ENST00000409694 CPLX1O14810 134 aa9.55□□□□□ -0.88
SYNE1-210ENST00000409694 SMARCE1Q969G3 411 aa9.55□□□□□ -0.88
SYNE1-210ENST00000409694 CWC22Q9HCG8 908 aaKnown RBP9.55□□□□□ -0.88
SYNE1-210ENST00000409694 TRDNQ13061 729 aa9.54□□□□□ -0.88
SYNE1-210ENST00000409694 NOL8Q76FK4 1167 aaKnown RBP9.54□□□□□ -0.88
SYNE1-210ENST00000409694 KIAA0754O94854 1291 aa9.54□□□□□ -0.88
SYNE1-210ENST00000409694 SOX12O15370 315 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms