RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 CHMP4AQ9BY43 222 aa22.88■■□□□ 1.25
COL18A1-204ENST00000400337 TSHZ2Q9NRE2 1034 aa22.88■■□□□ 1.25
COL18A1-204ENST00000400337 LMOD3Q0VAK6 560 aa22.87■■□□□ 1.25
COL18A1-204ENST00000400337 L1TD1Q5T7N2 865 aaKnown RBP22.86■■□□□ 1.25
COL18A1-204ENST00000400337 VGFO15240 615 aaPredicted RBP22.86■■□□□ 1.25
COL18A1-204ENST00000400337 UACAQ9BZF9 1416 aa22.85■■□□□ 1.25
COL18A1-204ENST00000400337 HMMRO75330 724 aa22.84■■□□□ 1.25
COL18A1-204ENST00000400337 NRDCO43847 1150 aa22.83■■□□□ 1.25
COL18A1-204ENST00000400337 ZNF644Q9H582 1327 aaPredicted RBP22.83■■□□□ 1.24
COL18A1-204ENST00000400337 GBP4Q96PP9 640 aa22.83■■□□□ 1.24
COL18A1-204ENST00000400337 TRIM6-TRIM34B2RNG4 842 aa22.81■■□□□ 1.24
COL18A1-204ENST00000400337 CHMP3Q9Y3E7 222 aa22.81■■□□□ 1.24
COL18A1-204ENST00000400337 CYB5RLQ6IPT4 315 aa22.81■■□□□ 1.24
COL18A1-204ENST00000400337 CGNL1Q0VF96 1302 aa22.81■■□□□ 1.24
COL18A1-204ENST00000400337 EVC2Q86UK5 1308 aa22.81■■□□□ 1.24
COL18A1-204ENST00000400337 BCL2L13Q9BXK5 485 aa22.8■■□□□ 1.24
COL18A1-204ENST00000400337 GZF1Q9H116 711 aaPredicted RBP22.8■■□□□ 1.24
COL18A1-204ENST00000400337 MYOM3Q5VTT5 1437 aa22.8■■□□□ 1.24
COL18A1-204ENST00000400337 GNL2Q13823 731 aaKnown RBP22.79■■□□□ 1.24
COL18A1-204ENST00000400337 ELL2O00472 640 aaPredicted RBP22.79■■□□□ 1.24
COL18A1-204ENST00000400337 PLIN1O60240 522 aa22.79■■□□□ 1.24
COL18A1-204ENST00000400337 MINK1Q8N4C8 1332 aaPredicted RBP22.78■■□□□ 1.24
COL18A1-204ENST00000400337 FGD6Q6ZV73 1430 aa22.78■■□□□ 1.24
COL18A1-204ENST00000400337 ISY1Q9ULR0 285 aaKnown RBP22.78■■□□□ 1.24
COL18A1-204ENST00000400337 IPO9Q96P70 1041 aaKnown RBP22.78■■□□□ 1.24
COL18A1-204ENST00000400337 GORABQ5T7V8 394 aa22.77■■□□□ 1.24
COL18A1-204ENST00000400337 HDAC5Q9UQL6 1122 aa22.77■■□□□ 1.24
COL18A1-204ENST00000400337 MSNP26038 577 aaKnown RBP22.76■■□□□ 1.23
COL18A1-204ENST00000400337 COG3Q96JB2 828 aa22.76■■□□□ 1.23
COL18A1-204ENST00000400337 DRC7Q8IY82 874 aa22.75■■□□□ 1.23
COL18A1-204ENST00000400337 ZBED9Q6R2W3 1325 aa22.75■■□□□ 1.23
COL18A1-204ENST00000400337 GPATCH3Q96I76 525 aa22.75■■□□□ 1.23
COL18A1-204ENST00000400337 CCDC9Q9Y3X0 531 aaKnown RBP22.74■■□□□ 1.23
COL18A1-204ENST00000400337 E9PSI1 815 aa22.74■■□□□ 1.23
COL18A1-204ENST00000400337 TAF7LQ5H9L4 462 aa22.73■■□□□ 1.23
COL18A1-204ENST00000400337 APAF1O14727 1248 aa22.73■■□□□ 1.23
COL18A1-204ENST00000400337 OSCARQ8IYS5 282 aa22.73■■□□□ 1.23
COL18A1-204ENST00000400337 KIF21BO75037 1637 aa22.73■■□□□ 1.23
COL18A1-204ENST00000400337 EXOC6Q8TAG9 804 aa22.72■■□□□ 1.23
COL18A1-204ENST00000400337 RRP1P56182 461 aaKnown RBP22.71■■□□□ 1.23
COL18A1-204ENST00000400337 AQRO60306 1485 aaKnown RBP eCLIP22.71■■□□□ 1.232e-7■■■■□ 26.2
COL18A1-204ENST00000400337 PTMSP20962 102 aa22.7■■□□□ 1.22
COL18A1-204ENST00000400337 CHAF1AQ13111 956 aaPredicted RBP22.7■■□□□ 1.22
COL18A1-204ENST00000400337 FOXD4L1Q9NU39 408 aa22.69■■□□□ 1.22
COL18A1-204ENST00000400337 NOL8Q76FK4 1167 aaKnown RBP22.68■■□□□ 1.22
COL18A1-204ENST00000400337 CENPQQ7L2Z9 268 aaPredicted RBP22.68■■□□□ 1.22
COL18A1-204ENST00000400337 LRRC9Q6ZRR7 1453 aa22.68■■□□□ 1.22
COL18A1-204ENST00000400337 ZKSCAN2Q63HK3 967 aa22.68■■□□□ 1.22
COL18A1-204ENST00000400337 CRBNQ96SW2 442 aa22.68■■□□□ 1.22
COL18A1-204ENST00000400337 NCAPD3P42695 1498 aa22.67■■□□□ 1.22
COL18A1-204ENST00000400337 COG6Q9Y2V7 657 aa22.66■■□□□ 1.22
COL18A1-204ENST00000400337 CUX1P39880 1505 aa22.66■■□□□ 1.22
COL18A1-204ENST00000400337 KIF7Q2M1P5 1343 aa22.64■■□□□ 1.22
COL18A1-204ENST00000400337 HSP90B1P14625 803 aaKnown RBP22.63■■□□□ 1.21
COL18A1-204ENST00000400337 ANKRD45Q5TZF3 282 aa22.63■■□□□ 1.21
COL18A1-204ENST00000400337 HTATSF1O43719 755 aaKnown RBP22.62■■□□□ 1.21
COL18A1-204ENST00000400337 CCDC7Q96M83 1385 aa22.62■■□□□ 1.21
COL18A1-204ENST00000400337 AEBP2Q6ZN18 517 aaPredicted RBP22.62■■□□□ 1.21
COL18A1-204ENST00000400337 DIAPH1O60610 1272 aaKnown RBP22.62■■□□□ 1.21
COL18A1-204ENST00000400337 PDE4AP27815 886 aa22.62■■□□□ 1.21
COL18A1-204ENST00000400337 ANKRD50Q9ULJ7 1429 aa22.62■■□□□ 1.21
COL18A1-204ENST00000400337 SYAP1Q96A49 352 aaPredicted RBP22.61■■□□□ 1.21
COL18A1-204ENST00000400337 NCOA2Q15596 1464 aa22.61■■□□□ 1.21
COL18A1-204ENST00000400337 CASKIN1Q8WXD9 1431 aa22.6■■□□□ 1.21
COL18A1-204ENST00000400337 FAM161AQ3B820 660 aa22.6■■□□□ 1.21
COL18A1-204ENST00000400337 C1orf141Q5JVX7 400 aa22.59■■□□□ 1.21
COL18A1-204ENST00000400337 ST18O60284 1047 aa22.58■■□□□ 1.21
COL18A1-204ENST00000400337 TEFQ10587 303 aa22.58■■□□□ 1.21
COL18A1-204ENST00000400337 RIPK4P57078 832 aa22.57■■□□□ 1.2
COL18A1-204ENST00000400337 RILPL2Q969X0 211 aa22.57■■□□□ 1.2
COL18A1-204ENST00000400337 PRDM2Q13029 1718 aa22.56■■□□□ 1.2
COL18A1-204ENST00000400337 GOLGA6L3A6NEY3 463 aa22.56■■□□□ 1.2
COL18A1-204ENST00000400337 FAM69CQ0P6D2 419 aa22.56■■□□□ 1.2
COL18A1-204ENST00000400337 FYCO1Q9BQS8 1478 aa22.56■■□□□ 1.2
COL18A1-204ENST00000400337 CLSTN1O94985 981 aa22.55■■□□□ 1.2
COL18A1-204ENST00000400337 KIAA2012Q0VF49 1180 aa22.54■■□□□ 1.2
COL18A1-204ENST00000400337 SLC4A3P48751 1232 aa22.54■■□□□ 1.2
COL18A1-204ENST00000400337 TMX4Q9H1E5 349 aaPredicted RBP22.54■■□□□ 1.2
COL18A1-204ENST00000400337 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
COL18A1-204ENST00000400337 EIF2S2P20042 333 aaKnown RBP22.53■■□□□ 1.2
COL18A1-204ENST00000400337 STAC3Q96MF2 364 aa22.53■■□□□ 1.2
COL18A1-204ENST00000400337 GTF2E1P29083 439 aaPredicted RBP22.53■■□□□ 1.2
COL18A1-204ENST00000400337 FOXD4L5Q5VV16 416 aaPredicted RBP22.53■■□□□ 1.2
COL18A1-204ENST00000400337 FOXD4L4Q8WXT5 416 aaPredicted RBP22.53■■□□□ 1.2
COL18A1-204ENST00000400337 AFAP1Q8N556 730 aa22.52■■□□□ 1.2
COL18A1-204ENST00000400337 RUNDC1Q96C34 613 aa22.52■■□□□ 1.2
COL18A1-204ENST00000400337 NGEFQ8N5V2 710 aa22.52■■□□□ 1.19
COL18A1-204ENST00000400337 DDX19BQ9UMR2 479 aa22.51■■□□□ 1.19
COL18A1-204ENST00000400337 TMEM132EQ6IEE7 984 aa22.51■■□□□ 1.19
COL18A1-204ENST00000400337 TOMM22Q9NS69 142 aa22.51■■□□□ 1.19
COL18A1-204ENST00000400337 KIF16BQ96L93 1317 aa22.5■■□□□ 1.19
COL18A1-204ENST00000400337 DZIP1LQ8IYY4 767 aaKnown RBP22.5■■□□□ 1.19
COL18A1-204ENST00000400337 NECTIN2Q92692 538 aa22.5■■□□□ 1.19
COL18A1-204ENST00000400337 CNTLNQ9NXG0 1405 aa22.5■■□□□ 1.19
COL18A1-204ENST00000400337 GRIN2BQ13224 1484 aa22.49■■□□□ 1.19
COL18A1-204ENST00000400337 FRAT2O75474 233 aaPredicted RBP22.49■■□□□ 1.19
COL18A1-204ENST00000400337 WASHC2AQ641Q2 1341 aa22.49■■□□□ 1.19
COL18A1-204ENST00000400337 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.49■■□□□ 1.193e-6■□□□□ 8.2
COL18A1-204ENST00000400337 GGNBP2Q9H3C7 697 aa22.49■■□□□ 1.19
COL18A1-204ENST00000400337 CSPP1Q1MSJ5 1256 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms