RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 PLCD4Q9BRC7 762 aa11.88□□□□□ -0.51
SMAD9-203ENST00000399275 USP8P40818 1118 aa11.88□□□□□ -0.51
SMAD9-203ENST00000399275 GOLGA2Q08379 1002 aa11.87□□□□□ -0.51
SMAD9-203ENST00000399275 ATAD2BQ9ULI0 1458 aa11.87□□□□□ -0.51
SMAD9-203ENST00000399275 E9PSI1 815 aa11.87□□□□□ -0.51
SMAD9-203ENST00000399275 DYDC1Q8WWB3 177 aa11.87□□□□□ -0.51
SMAD9-203ENST00000399275 CHMP4AQ9BY43 222 aa11.87□□□□□ -0.51
SMAD9-203ENST00000399275 MAPK8IP3Q9UPT6 1336 aa11.87□□□□□ -0.51
SMAD9-203ENST00000399275 GNL2Q13823 731 aaKnown RBP11.87□□□□□ -0.51
SMAD9-203ENST00000399275 BCL11BQ9C0K0 894 aaPredicted RBP11.87□□□□□ -0.51
SMAD9-203ENST00000399275 MSH5O43196 834 aa11.86□□□□□ -0.51
SMAD9-203ENST00000399275 ARGLU1Q9NWB6 273 aaPredicted RBP11.86□□□□□ -0.51
SMAD9-203ENST00000399275 NEUROD2Q15784 382 aa11.86□□□□□ -0.51
SMAD9-203ENST00000399275 GPATCH11Q8N954 259 aa11.86□□□□□ -0.51
SMAD9-203ENST00000399275 PHF14O94880 888 aa11.86□□□□□ -0.51
SMAD9-203ENST00000399275 NFKBIBQ15653 356 aa11.86□□□□□ -0.51
SMAD9-203ENST00000399275 CCAR2Q8N163 923 aaKnown RBP11.86□□□□□ -0.51
SMAD9-203ENST00000399275 PKD2Q13563 968 aa11.85□□□□□ -0.51
SMAD9-203ENST00000399275 CCDC7Q96M83 1385 aa11.85□□□□□ -0.51
SMAD9-203ENST00000399275 FOXD1Q16676 465 aa11.85□□□□□ -0.51
SMAD9-203ENST00000399275 SKOR2Q2VWA4 1001 aaPredicted RBP11.85□□□□□ -0.51
SMAD9-203ENST00000399275 ZNF592Q92610 1267 aa11.85□□□□□ -0.51
SMAD9-203ENST00000399275 DIAPH3Q9NSV4 1193 aa11.85□□□□□ -0.51
SMAD9-203ENST00000399275 TPM4P67936 248 aa11.85□□□□□ -0.51
SMAD9-203ENST00000399275 SSR1P43307 286 aaKnown RBP11.85□□□□□ -0.51
SMAD9-203ENST00000399275 UACAQ9BZF9 1416 aa11.85□□□□□ -0.51
SMAD9-203ENST00000399275 RSPH4AQ5TD94 716 aa11.84□□□□□ -0.51
SMAD9-203ENST00000399275 PLCD3Q8N3E9 789 aa11.84□□□□□ -0.51
SMAD9-203ENST00000399275 NAP1L2Q9ULW6 460 aaPredicted RBP11.84□□□□□ -0.51
SMAD9-203ENST00000399275 HMMRO75330 724 aa11.84□□□□□ -0.51
SMAD9-203ENST00000399275 GIMAP7Q8NHV1 300 aa11.84□□□□□ -0.51
SMAD9-203ENST00000399275 RBM25P49756 843 aaKnown RBP11.83□□□□□ -0.52
SMAD9-203ENST00000399275 LEKR1Q6ZMV7 388 aa11.83□□□□□ -0.52
SMAD9-203ENST00000399275 PAK3O75914 559 aaPredicted RBP11.82□□□□□ -0.52
SMAD9-203ENST00000399275 SLC4A3P48751 1232 aa11.82□□□□□ -0.52
SMAD9-203ENST00000399275 HSP90B1P14625 803 aaKnown RBP11.82□□□□□ -0.52
SMAD9-203ENST00000399275 WWC1Q8IX03 1113 aa11.82□□□□□ -0.52
SMAD9-203ENST00000399275 CRBNQ96SW2 442 aa11.82□□□□□ -0.52
SMAD9-203ENST00000399275 HSP90B2PQ58FF3 399 aa11.82□□□□□ -0.52
SMAD9-203ENST00000399275 CGNQ9P2M7 1197 aaKnown RBP11.82□□□□□ -0.52
SMAD9-203ENST00000399275 ZHX1Q9UKY1 873 aaPredicted RBP11.82□□□□□ -0.52
SMAD9-203ENST00000399275 TPM3P06753 285 aa11.82□□□□□ -0.52
SMAD9-203ENST00000399275 TNNT1P13805 278 aa11.82□□□□□ -0.52
SMAD9-203ENST00000399275 BRD2P25440 801 aaKnown RBP11.82□□□□□ -0.52
SMAD9-203ENST00000399275 PDCL3Q9H2J4 239 aa11.81□□□□□ -0.52
SMAD9-203ENST00000399275 ACBD3Q9H3P7 528 aa11.81□□□□□ -0.52
SMAD9-203ENST00000399275 ERICH3Q5RHP9 1530 aa11.81□□□□□ -0.52
SMAD9-203ENST00000399275 IPO8O15397 1037 aaKnown RBP11.81□□□□□ -0.52
SMAD9-203ENST00000399275 HMGN5P82970 282 aaKnown RBP11.8□□□□□ -0.52
SMAD9-203ENST00000399275 DDX49Q9Y6V7 483 aaKnown RBP11.8□□□□□ -0.52
SMAD9-203ENST00000399275 FHOD3Q2V2M9 1422 aa11.8□□□□□ -0.52
SMAD9-203ENST00000399275 SMG6Q86US8 1419 aaKnown RBP11.8□□□□□ -0.52
SMAD9-203ENST00000399275 ANKRD30AQ9BXX3 1397 aa11.79□□□□□ -0.52
SMAD9-203ENST00000399275 WASHC2AQ641Q2 1341 aa11.79□□□□□ -0.52
SMAD9-203ENST00000399275 MFAP1P55081 439 aaKnown RBP11.79□□□□□ -0.52
SMAD9-203ENST00000399275 MCCP23508 829 aa11.79□□□□□ -0.52
SMAD9-203ENST00000399275 MRE11P49959 708 aa11.79□□□□□ -0.52
SMAD9-203ENST00000399275 LRRC9Q6ZRR7 1453 aa11.79□□□□□ -0.52
SMAD9-203ENST00000399275 USP47Q96K76 1375 aa11.79□□□□□ -0.52
SMAD9-203ENST00000399275 CENPJQ9HC77 1338 aaPredicted RBP11.79□□□□□ -0.52
SMAD9-203ENST00000399275 CHMP7Q8WUX9 453 aaPredicted RBP11.78□□□□□ -0.52
SMAD9-203ENST00000399275 PRDM10Q9NQV6 1147 aa11.78□□□□□ -0.52
SMAD9-203ENST00000399275 CGNL1Q0VF96 1302 aa11.78□□□□□ -0.52
SMAD9-203ENST00000399275 FGD1P98174 961 aa11.78□□□□□ -0.52
SMAD9-203ENST00000399275 OS9Q13438 667 aaPredicted RBP11.78□□□□□ -0.52
SMAD9-203ENST00000399275 EIF4G1Q04637 1599 aaKnown RBP11.78□□□□□ -0.52
SMAD9-203ENST00000399275 CCDC70Q6NSX1 233 aa11.78□□□□□ -0.52
SMAD9-203ENST00000399275 IPO4Q8TEX9 1081 aaKnown RBP11.78□□□□□ -0.52
SMAD9-203ENST00000399275 CDR1P51861 262 aa11.77□□□□□ -0.52
SMAD9-203ENST00000399275 EIF3AQ14152 1382 aaKnown RBP11.77□□□□□ -0.52
SMAD9-203ENST00000399275 AK7Q96M32 723 aa11.77□□□□□ -0.53
SMAD9-203ENST00000399275 KIF7Q2M1P5 1343 aa11.77□□□□□ -0.53
SMAD9-203ENST00000399275 SYNJ1O43426 1573 aa11.77□□□□□ -0.53
SMAD9-203ENST00000399275 KIAA1211Q6ZU35 1233 aa11.76□□□□□ -0.53
SMAD9-203ENST00000399275 CALCOCO1Q9P1Z2 691 aa11.76□□□□□ -0.53
SMAD9-203ENST00000399275 CUX1P39880 1505 aa11.76□□□□□ -0.53
SMAD9-203ENST00000399275 PLIN1O60240 522 aa11.76□□□□□ -0.53
SMAD9-203ENST00000399275 MORC1Q86VD1 984 aa11.76□□□□□ -0.53
SMAD9-203ENST00000399275 DNAJC2Q99543 621 aaKnown RBP11.76□□□□□ -0.53
SMAD9-203ENST00000399275 BRD4O60885 1362 aaPredicted RBP11.76□□□□□ -0.53
SMAD9-203ENST00000399275 CHMP5Q9NZZ3 219 aa11.76□□□□□ -0.53
SMAD9-203ENST00000399275 STAG3Q9UJ98 1225 aa11.76□□□□□ -0.53
SMAD9-203ENST00000399275 FGD6Q6ZV73 1430 aa11.76□□□□□ -0.53
SMAD9-203ENST00000399275 BACH2Q9BYV9 841 aa11.75□□□□□ -0.53
SMAD9-203ENST00000399275 DCTN1Q14203 1278 aa11.75□□□□□ -0.53
SMAD9-203ENST00000399275 NUP155O75694 1391 aa11.75□□□□□ -0.53
SMAD9-203ENST00000399275 NGEFQ8N5V2 710 aa11.75□□□□□ -0.53
SMAD9-203ENST00000399275 ERICH4A6NGS2 130 aa11.74□□□□□ -0.53
SMAD9-203ENST00000399275 CLGNO14967 610 aa11.74□□□□□ -0.53
SMAD9-203ENST00000399275 PAIP2Q9BPZ3 127 aaKnown RBP11.74□□□□□ -0.53
SMAD9-203ENST00000399275 WDR97A6NE52 1622 aa11.74□□□□□ -0.53
SMAD9-203ENST00000399275 GTF2A1P52655 376 aaPredicted RBP11.74□□□□□ -0.53
SMAD9-203ENST00000399275 AAMPQ13685 434 aa11.73□□□□□ -0.53
SMAD9-203ENST00000399275 KIF3AQ9Y496 699 aa11.73□□□□□ -0.53
SMAD9-203ENST00000399275 MNS1Q8NEH6 495 aa11.73□□□□□ -0.53
SMAD9-203ENST00000399275 ITPRIPQ8IWB1 547 aa11.73□□□□□ -0.53
SMAD9-203ENST00000399275 ARAP1Q96P48 1450 aa11.73□□□□□ -0.53
SMAD9-203ENST00000399275 UQCRHLA0A096LP55 91 aa11.73□□□□□ -0.53
SMAD9-203ENST00000399275 UQCRHP07919 91 aa11.73□□□□□ -0.53
SMAD9-203ENST00000399275 TAOK2Q9UL54 1235 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms