RNA–Protein interactions for RNA: ENST00000399002.6

SPTLC3-201, Transcript of serine palmitoyltransferase long chain base subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC3, Length 6,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC3-201ENST00000399002 FAM161AQ3B820 660 aa10.37□□□□□ -0.75
SPTLC3-201ENST00000399002 LRRFIP1Q32MZ4 808 aaKnown RBP10.37□□□□□ -0.75
SPTLC3-201ENST00000399002 L3MBTL2Q969R5 705 aa10.37□□□□□ -0.75
SPTLC3-201ENST00000399002 RTN4Q9NQC3 1192 aaKnown RBP10.37□□□□□ -0.75
SPTLC3-201ENST00000399002 STK26Q9P289 416 aa10.37□□□□□ -0.75
SPTLC3-201ENST00000399002 KIF21BO75037 1637 aa10.36□□□□□ -0.75
SPTLC3-201ENST00000399002 SPRYD3Q8NCJ5 442 aa10.36□□□□□ -0.75
SPTLC3-201ENST00000399002 GORABQ5T7V8 394 aa10.36□□□□□ -0.75
SPTLC3-201ENST00000399002 MYOM3Q5VTT5 1437 aa10.36□□□□□ -0.75
SPTLC3-201ENST00000399002 EVC2Q86UK5 1308 aa10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 NOC3LQ8WTT2 800 aaKnown RBP10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 FANCD2Q9BXW9 1451 aa10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 TSHZ2Q9NRE2 1034 aa10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 SENP3-EIF4A1A0A087X0R7 540 aa10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 TRIM6-TRIM34B2RNG4 842 aa10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 TULP1O00294 542 aaPredicted RBP10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 CSB-PGBD3P0DP91 1061 aa10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 RSPH6AQ9H0K4 717 aa10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 TDRD9Q8NDG6 1382 aaKnown RBP10.35□□□□□ -0.75
SPTLC3-201ENST00000399002 TAF7LQ5H9L4 462 aa10.34□□□□□ -0.75
SPTLC3-201ENST00000399002 ERICH3Q5RHP9 1530 aa10.34□□□□□ -0.75
SPTLC3-201ENST00000399002 FYCO1Q9BQS8 1478 aa10.33□□□□□ -0.76
SPTLC3-201ENST00000399002 RRP1P56182 461 aaKnown RBP10.33□□□□□ -0.76
SPTLC3-201ENST00000399002 ZKSCAN2Q63HK3 967 aa10.33□□□□□ -0.76
SPTLC3-201ENST00000399002 USP47Q96K76 1375 aa10.33□□□□□ -0.76
SPTLC3-201ENST00000399002 CLSTN1O94985 981 aa10.33□□□□□ -0.76
SPTLC3-201ENST00000399002 SAFB2Q14151 953 aaKnown RBP eCLIP10.33□□□□□ -0.76
SPTLC3-201ENST00000399002 FOXD1Q16676 465 aa10.33□□□□□ -0.76
SPTLC3-201ENST00000399002 KIF3BO15066 747 aa10.33□□□□□ -0.76
SPTLC3-201ENST00000399002 WASHC2CQ9Y4E1 1318 aa10.33□□□□□ -0.76
SPTLC3-201ENST00000399002 TPM2P07951 284 aa10.32□□□□□ -0.76
SPTLC3-201ENST00000399002 FANCIQ9NVI1 1328 aa10.32□□□□□ -0.76
SPTLC3-201ENST00000399002 TPM3P06753 285 aa10.32□□□□□ -0.76
SPTLC3-201ENST00000399002 SCAPERQ9BY12 1400 aa10.32□□□□□ -0.76
SPTLC3-201ENST00000399002 PAK3O75914 559 aaPredicted RBP10.32□□□□□ -0.76
SPTLC3-201ENST00000399002 VGFO15240 615 aaPredicted RBP10.32□□□□□ -0.76
SPTLC3-201ENST00000399002 RUFY2Q8WXA3 655 aa10.32□□□□□ -0.76
SPTLC3-201ENST00000399002 TAOK2Q9UL54 1235 aa10.32□□□□□ -0.76
SPTLC3-201ENST00000399002 HNRNPMP52272 730 aaKnown RBP eCLIP10.31□□□□□ -0.76
SPTLC3-201ENST00000399002 SLKQ9H2G2 1235 aaPredicted RBP10.31□□□□□ -0.76
SPTLC3-201ENST00000399002 MLECQ14165 292 aa10.31□□□□□ -0.76
SPTLC3-201ENST00000399002 DDX19BQ9UMR2 479 aa10.31□□□□□ -0.76
SPTLC3-201ENST00000399002 EFCAB5A4FU69 1503 aa10.3□□□□□ -0.76
SPTLC3-201ENST00000399002 APBB1O00213 710 aa10.3□□□□□ -0.76
SPTLC3-201ENST00000399002 AMPHP49418 695 aa10.3□□□□□ -0.76
SPTLC3-201ENST00000399002 CNTLNQ9NXG0 1405 aa10.3□□□□□ -0.76
SPTLC3-201ENST00000399002 WWC1Q8IX03 1113 aa10.29□□□□□ -0.76
SPTLC3-201ENST00000399002 COG3Q96JB2 828 aa10.29□□□□□ -0.76
SPTLC3-201ENST00000399002 ISY1Q9ULR0 285 aaKnown RBP10.29□□□□□ -0.76
SPTLC3-201ENST00000399002 SOX12O15370 315 aa10.29□□□□□ -0.76
SPTLC3-201ENST00000399002 REC8O95072 547 aa10.29□□□□□ -0.76
SPTLC3-201ENST00000399002 TPM1P09493 284 aa10.29□□□□□ -0.76
SPTLC3-201ENST00000399002 CCDC70Q6NSX1 233 aa10.29□□□□□ -0.76
SPTLC3-201ENST00000399002 GPS2Q13227 327 aa10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 API5Q9BZZ5 524 aaKnown RBP10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 SETQ01105 290 aaPredicted RBP10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 NGDNQ8NEJ9 315 aaKnown RBP10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 FGD6Q6ZV73 1430 aa10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 PANK3Q9H999 370 aa10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 CASKIN1Q8WXD9 1431 aa10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 H3BQV1 296 aa10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 IFFO2Q5TF58 517 aa10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 CCDC146Q8IYE0 955 aa10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 PRKRIP1Q9H875 184 aaPredicted RBP10.28□□□□□ -0.76
SPTLC3-201ENST00000399002 GZF1Q9H116 711 aaPredicted RBP10.27□□□□□ -0.76
SPTLC3-201ENST00000399002 HOOK1Q9UJC3 728 aaKnown RBP10.27□□□□□ -0.76
SPTLC3-201ENST00000399002 PDE4AP27815 886 aa10.27□□□□□ -0.77
SPTLC3-201ENST00000399002 TSR1Q2NL82 804 aaKnown RBP10.27□□□□□ -0.77
SPTLC3-201ENST00000399002 C1orf141Q5JVX7 400 aa10.27□□□□□ -0.77
SPTLC3-201ENST00000399002 CHMP3Q9Y3E7 222 aa10.27□□□□□ -0.77
SPTLC3-201ENST00000399002 PTPRGP23470 1445 aa10.27□□□□□ -0.77
SPTLC3-201ENST00000399002 GAPVD1Q14C86 1478 aa10.27□□□□□ -0.77
SPTLC3-201ENST00000399002 EHBP1L1Q8N3D4 1523 aa10.27□□□□□ -0.77
SPTLC3-201ENST00000399002 RRBP1Q9P2E9 1410 aaKnown RBP10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 SF3A1Q15459 793 aaKnown RBP10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 RASSF8Q8NHQ8 419 aa10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 NINLQ9Y2I6 1382 aa10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 GOLGA6L19H0YKK7 550 aa10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 LRRC9Q6ZRR7 1453 aa10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 A0A0U1RQG5 324 aaPredicted RBP10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 TNNT3P45378 269 aaPredicted RBP10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 GSE1Q14687 1217 aa10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 SLC4A10Q6U841 1118 aa10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 FAM184AQ8NB25 1140 aa10.26□□□□□ -0.77
SPTLC3-201ENST00000399002 HSP90AB4PQ58FF6 505 aa10.25□□□□□ -0.77
SPTLC3-201ENST00000399002 FGD5Q6ZNL6 1462 aa10.25□□□□□ -0.77
SPTLC3-201ENST00000399002 SYNE3Q6ZMZ3 975 aa10.25□□□□□ -0.77
SPTLC3-201ENST00000399002 AMOTL1Q8IY63 956 aa10.25□□□□□ -0.77
SPTLC3-201ENST00000399002 CEP89Q96ST8 783 aa10.25□□□□□ -0.77
SPTLC3-201ENST00000399002 CCDC47Q96A33 483 aaKnown RBP10.25□□□□□ -0.77
SPTLC3-201ENST00000399002 JPH4Q96JJ6 628 aa10.25□□□□□ -0.77
SPTLC3-201ENST00000399002 BRD4O60885 1362 aaPredicted RBP10.25□□□□□ -0.77
SPTLC3-201ENST00000399002 CPLX2Q6PUV4 134 aaKnown RBP10.24□□□□□ -0.77
SPTLC3-201ENST00000399002 RUNDC1Q96C34 613 aa10.24□□□□□ -0.77
SPTLC3-201ENST00000399002 AKAP17AQ02040 695 aaKnown RBP10.24□□□□□ -0.77
SPTLC3-201ENST00000399002 TPD52L1Q16890 204 aaPredicted RBP10.24□□□□□ -0.77
SPTLC3-201ENST00000399002 RNF20Q5VTR2 975 aa10.24□□□□□ -0.77
SPTLC3-201ENST00000399002 PRDM2Q13029 1718 aa10.24□□□□□ -0.77
SPTLC3-201ENST00000399002 PLEKHH2Q8IVE3 1493 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms