RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 GOLGA3Q08378 1498 aa8.93□□□□□ -0.98
UPF2-203ENST00000397053 CSPP1Q1MSJ5 1256 aa8.93□□□□□ -0.98
UPF2-203ENST00000397053 CARMIL2Q6F5E8 1435 aa8.93□□□□□ -0.98
UPF2-203ENST00000397053 USP35Q9P2H5 1018 aa8.93□□□□□ -0.98
UPF2-203ENST00000397053 NEXNQ0ZGT2 675 aa8.93□□□□□ -0.98
UPF2-203ENST00000397053 NGEFQ8N5V2 710 aa8.93□□□□□ -0.98
UPF2-203ENST00000397053 LRRFIP1Q32MZ4 808 aaKnown RBP8.93□□□□□ -0.98
UPF2-203ENST00000397053 R3HCC1Q9Y3T6 440 aaKnown RBP8.93□□□□□ -0.98
UPF2-203ENST00000397053 PTMSP20962 102 aa8.92□□□□□ -0.98
UPF2-203ENST00000397053 CLUAP1Q96AJ1 413 aa8.92□□□□□ -0.98
UPF2-203ENST00000397053 CHMP4CQ96CF2 233 aa8.92□□□□□ -0.98
UPF2-203ENST00000397053 WRNQ14191 1432 aaPredicted RBP eCLIP8.92□□□□□ -0.98
UPF2-203ENST00000397053 SLKQ9H2G2 1235 aaPredicted RBP8.91□□□□□ -0.98
UPF2-203ENST00000397053 TPM2P07951 284 aa8.9□□□□□ -0.98
UPF2-203ENST00000397053 PAF1Q8N7H5 531 aa8.9□□□□□ -0.98
UPF2-203ENST00000397053 FAM184AQ8NB25 1140 aa8.9□□□□□ -0.98
UPF2-203ENST00000397053 GZF1Q9H116 711 aaPredicted RBP8.9□□□□□ -0.98
UPF2-203ENST00000397053 EIF4G1Q04637 1599 aaKnown RBP8.9□□□□□ -0.98
UPF2-203ENST00000397053 NUP155O75694 1391 aa8.9□□□□□ -0.98
UPF2-203ENST00000397053 TCERG1O14776 1098 aaKnown RBP8.9□□□□□ -0.98
UPF2-203ENST00000397053 MFAP1P55081 439 aaKnown RBP8.9□□□□□ -0.98
UPF2-203ENST00000397053 RBM33Q96EV2 1170 aaKnown RBP8.9□□□□□ -0.98
UPF2-203ENST00000397053 H3BQV1 296 aa8.9□□□□□ -0.99
UPF2-203ENST00000397053 IFFO2Q5TF58 517 aa8.9□□□□□ -0.99
UPF2-203ENST00000397053 APPP05067 770 aa8.9□□□□□ -0.99
UPF2-203ENST00000397053 CCAR1Q8IX12 1150 aaKnown RBP8.9□□□□□ -0.99
UPF2-203ENST00000397053 EIF3AQ14152 1382 aaKnown RBP8.9□□□□□ -0.99
UPF2-203ENST00000397053 FHAD1B1AJZ9 1412 aa8.89□□□□□ -0.99
UPF2-203ENST00000397053 CEP162Q5TB80 1403 aa8.89□□□□□ -0.99
UPF2-203ENST00000397053 BAZ1BQ9UIG0 1483 aaKnown RBP8.89□□□□□ -0.99
UPF2-203ENST00000397053 CYB5RLQ6IPT4 315 aa8.89□□□□□ -0.99
UPF2-203ENST00000397053 PMFBP1Q8TBY8 1022 aa8.89□□□□□ -0.99
UPF2-203ENST00000397053 CCDC47Q96A33 483 aaKnown RBP8.89□□□□□ -0.99
UPF2-203ENST00000397053 ROCK2O75116 1388 aaKnown RBP8.89□□□□□ -0.99
UPF2-203ENST00000397053 TPM1P09493 284 aa8.89□□□□□ -0.99
UPF2-203ENST00000397053 TNNT3P45378 269 aaPredicted RBP8.89□□□□□ -0.99
UPF2-203ENST00000397053 ELL2O00472 640 aaPredicted RBP8.88□□□□□ -0.99
UPF2-203ENST00000397053 SF3B2Q13435 895 aaKnown RBP8.88□□□□□ -0.99
UPF2-203ENST00000397053 TRAK1Q9UPV9 953 aa8.88□□□□□ -0.99
UPF2-203ENST00000397053 IPO7O95373 1038 aaKnown RBP8.88□□□□□ -0.99
UPF2-203ENST00000397053 PPP1R1BQ9UD71 204 aaPredicted RBP8.88□□□□□ -0.99
UPF2-203ENST00000397053 COG3Q96JB2 828 aa8.88□□□□□ -0.99
UPF2-203ENST00000397053 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.88□□□□□ -0.991e-10■■■■■ 93.8
UPF2-203ENST00000397053 C9orf78Q9NZ63 289 aaPredicted RBP8.88□□□□□ -0.99
UPF2-203ENST00000397053 RCAN3Q9UKA8 241 aa8.88□□□□□ -0.99
UPF2-203ENST00000397053 FOXD1Q16676 465 aa8.87□□□□□ -0.99
UPF2-203ENST00000397053 ST18O60284 1047 aa8.87□□□□□ -0.99
UPF2-203ENST00000397053 PSME1Q06323 249 aa8.87□□□□□ -0.99
UPF2-203ENST00000397053 TRIM29Q14134 588 aa8.87□□□□□ -0.99
UPF2-203ENST00000397053 RILPL2Q969X0 211 aa8.87□□□□□ -0.99
UPF2-203ENST00000397053 WASHC2AQ641Q2 1341 aa8.87□□□□□ -0.99
UPF2-203ENST00000397053 HSPA5P11021 654 aaKnown RBP8.87□□□□□ -0.99
UPF2-203ENST00000397053 EIF2S2P20042 333 aaKnown RBP8.87□□□□□ -0.99
UPF2-203ENST00000397053 CARMIL1Q5VZK9 1371 aa8.87□□□□□ -0.99
UPF2-203ENST00000397053 ARID3AQ99856 593 aa8.86□□□□□ -0.99
UPF2-203ENST00000397053 CPLX1O14810 134 aa8.86□□□□□ -0.99
UPF2-203ENST00000397053 RALBP1Q15311 655 aa8.86□□□□□ -0.99
UPF2-203ENST00000397053 PCMTD1Q96MG8 357 aaPredicted RBP8.86□□□□□ -0.99
UPF2-203ENST00000397053 TIMELESSQ9UNS1 1208 aa8.86□□□□□ -0.99
UPF2-203ENST00000397053 DCAF1Q9Y4B6 1507 aa8.86□□□□□ -0.99
UPF2-203ENST00000397053 TRDNQ13061 729 aa8.86□□□□□ -0.99
UPF2-203ENST00000397053 MCTP1Q6DN14 999 aa8.86□□□□□ -0.99
UPF2-203ENST00000397053 BECN2A8MW95 431 aa8.86□□□□□ -0.99
UPF2-203ENST00000397053 ATF3P18847 181 aa8.85□□□□□ -0.99
UPF2-203ENST00000397053 CCAR2Q8N163 923 aaKnown RBP8.85□□□□□ -0.99
UPF2-203ENST00000397053 DIAPH3Q9NSV4 1193 aa8.85□□□□□ -0.99
UPF2-203ENST00000397053 CT47A1Q5JQC4 288 aaPredicted RBP8.85□□□□□ -0.99
UPF2-203ENST00000397053 ANKRD20A12PQ8NF67 263 aa8.85□□□□□ -0.99
UPF2-203ENST00000397053 FOXD4L1Q9NU39 408 aa8.85□□□□□ -0.99
UPF2-203ENST00000397053 ANKRD30AQ9BXX3 1397 aa8.84□□□□□ -0.99
UPF2-203ENST00000397053 DDX58O95786 925 aaKnown RBP8.84□□□□□ -0.99
UPF2-203ENST00000397053 RAPGEF4Q8WZA2 1011 aa8.84□□□□□ -0.99
UPF2-203ENST00000397053 CENPJQ9HC77 1338 aaPredicted RBP8.84□□□□□ -0.99
UPF2-203ENST00000397053 GOLGA6L19H0YKK7 550 aa8.84□□□□□ -0.99
UPF2-203ENST00000397053 ODF2Q5BJF6 829 aa8.84□□□□□ -0.99
UPF2-203ENST00000397053 FOXD4L5Q5VV16 416 aaPredicted RBP8.84□□□□□ -0.99
UPF2-203ENST00000397053 CCDC70Q6NSX1 233 aa8.84□□□□□ -0.99
UPF2-203ENST00000397053 CCDC146Q8IYE0 955 aa8.84□□□□□ -0.99
UPF2-203ENST00000397053 FOXD4L4Q8WXT5 416 aaPredicted RBP8.84□□□□□ -0.99
UPF2-203ENST00000397053 PHF14O94880 888 aa8.84□□□□□ -0.99
UPF2-203ENST00000397053 IKQ13123 557 aaPredicted RBP8.83□□□□□ -1
UPF2-203ENST00000397053 ATP6V1DQ9Y5K8 247 aa8.83□□□□□ -1
UPF2-203ENST00000397053 CEP164Q9UPV0 1460 aa8.83□□□□□ -1
UPF2-203ENST00000397053 VGFO15240 615 aaPredicted RBP8.83□□□□□ -1
UPF2-203ENST00000397053 HNRNPMP52272 730 aaKnown RBP eCLIP8.83□□□□□ -13e-6■□□□□ 9.1
UPF2-203ENST00000397053 ERICH2A1L162 156 aa8.83□□□□□ -1
UPF2-203ENST00000397053 ZKSCAN1P17029 563 aaPredicted RBP8.83□□□□□ -1
UPF2-203ENST00000397053 RSPH4AQ5TD94 716 aa8.83□□□□□ -1
UPF2-203ENST00000397053 RUFY2Q8WXA3 655 aa8.82□□□□□ -1
UPF2-203ENST00000397053 CUX2O14529 1486 aa8.81□□□□□ -1
UPF2-203ENST00000397053 IFIT2P09913 472 aaKnown RBP8.81□□□□□ -1
UPF2-203ENST00000397053 WWC2Q6AWC2 1192 aa8.81□□□□□ -1
UPF2-203ENST00000397053 NFXL1Q6ZNB6 911 aa8.81□□□□□ -1
UPF2-203ENST00000397053 NLRP2Q9NX02 1062 aa8.81□□□□□ -1
UPF2-203ENST00000397053 ZFYVE27Q5T4F4 411 aa8.81□□□□□ -1
UPF2-203ENST00000397053 TMEM132AQ24JP5 1023 aa8.81□□□□□ -1
UPF2-203ENST00000397053 MPHOSPH9Q99550 1183 aa8.81□□□□□ -1
UPF2-203ENST00000397053 RRP7AQ9Y3A4 280 aaKnown RBP8.81□□□□□ -1
UPF2-203ENST00000397053 PATL2C9JE40 543 aaKnown RBP8.8□□□□□ -1
UPF2-203ENST00000397053 G3BP1Q13283 466 aaKnown RBP eCLIP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms