RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 NAP1L5Q96NT1 182 aaPredicted RBP7.51□□□□□ -1.21
RFFL-202ENST00000394597 POGKQ9P215 609 aa7.51□□□□□ -1.21
RFFL-202ENST00000394597 AKNAQ7Z591 1439 aa7.5□□□□□ -1.21
RFFL-202ENST00000394597 SCAPERQ9BY12 1400 aa7.5□□□□□ -1.21
RFFL-202ENST00000394597 IL27Q8NEV9 243 aa7.5□□□□□ -1.21
RFFL-202ENST00000394597 CCDC141Q6ZP82 1450 aa7.5□□□□□ -1.21
RFFL-202ENST00000394597 WDR43Q15061 677 aaKnown RBP eCLIP7.49□□□□□ -1.21
RFFL-202ENST00000394597 CCER2I3L3R5 266 aa7.49□□□□□ -1.21
RFFL-202ENST00000394597 NCOA1Q15788 1441 aa7.49□□□□□ -1.21
RFFL-202ENST00000394597 KIAA1107Q9UPP5 1409 aa7.48□□□□□ -1.21
RFFL-202ENST00000394597 CD109Q6YHK3 1445 aa7.48□□□□□ -1.21
RFFL-202ENST00000394597 STAC3Q96MF2 364 aa7.48□□□□□ -1.21
RFFL-202ENST00000394597 MSH5O43196 834 aa7.48□□□□□ -1.21
RFFL-202ENST00000394597 PTPRKQ15262 1439 aa7.47□□□□□ -1.21
RFFL-202ENST00000394597 PODXL2Q9NZ53 605 aa7.47□□□□□ -1.21
RFFL-202ENST00000394597 ST20-MTHFSA0A0A6YYL1 179 aa7.47□□□□□ -1.21
RFFL-202ENST00000394597 TCOF1Q13428 1488 aaKnown RBP7.47□□□□□ -1.21
RFFL-202ENST00000394597 RAPGEF3O95398 923 aa7.46□□□□□ -1.21
RFFL-202ENST00000394597 PLCH2O75038 1416 aa7.46□□□□□ -1.22
RFFL-202ENST00000394597 RSPH6AQ9H0K4 717 aa7.46□□□□□ -1.22
RFFL-202ENST00000394597 VGFO15240 615 aaPredicted RBP7.45□□□□□ -1.22
RFFL-202ENST00000394597 IPO9Q96P70 1041 aaKnown RBP7.45□□□□□ -1.22
RFFL-202ENST00000394597 STK26Q9P289 416 aa7.45□□□□□ -1.22
RFFL-202ENST00000394597 EIF3AQ14152 1382 aaKnown RBP7.45□□□□□ -1.22
RFFL-202ENST00000394597 ABCC2Q92887 1545 aa7.45□□□□□ -1.22
RFFL-202ENST00000394597 CC2D1BQ5T0F9 858 aaKnown RBP7.45□□□□□ -1.22
RFFL-202ENST00000394597 ITSN2Q9NZM3 1697 aa7.44□□□□□ -1.22
RFFL-202ENST00000394597 USP47Q96K76 1375 aa7.44□□□□□ -1.22
RFFL-202ENST00000394597 ADGRL1O94910 1474 aa7.44□□□□□ -1.22
RFFL-202ENST00000394597 NUTM2DQ5VT03 806 aaPredicted RBP7.44□□□□□ -1.22
RFFL-202ENST00000394597 ASXL2Q76L83 1435 aa7.44□□□□□ -1.22
RFFL-202ENST00000394597 DDRGK1Q96HY6 314 aa7.44□□□□□ -1.22
RFFL-202ENST00000394597 ANKRD30BQ9BXX2 1392 aa7.44□□□□□ -1.22
RFFL-202ENST00000394597 FANCAO15360 1455 aa7.43□□□□□ -1.22
RFFL-202ENST00000394597 SAFB2Q14151 953 aaKnown RBP eCLIP7.43□□□□□ -1.22
RFFL-202ENST00000394597 HSP90AA1P07900 732 aaKnown RBP7.43□□□□□ -1.22
RFFL-202ENST00000394597 SRPK2P78362 688 aaKnown RBP7.43□□□□□ -1.22
RFFL-202ENST00000394597 CFAP53Q96M91 514 aa7.43□□□□□ -1.22
RFFL-202ENST00000394597 WDR7Q9Y4E6 1490 aa7.43□□□□□ -1.22
RFFL-202ENST00000394597 RALBP1Q15311 655 aa7.42□□□□□ -1.22
RFFL-202ENST00000394597 NBPF8Q3BBV2 869 aa7.42□□□□□ -1.22
RFFL-202ENST00000394597 CANXP27824 592 aaKnown RBP7.42□□□□□ -1.22
RFFL-202ENST00000394597 HSP90AA2PQ14568 343 aaPredicted RBP7.41□□□□□ -1.22
RFFL-202ENST00000394597 C14orf37Q86TY3 774 aa7.41□□□□□ -1.22
RFFL-202ENST00000394597 TRAK1Q9UPV9 953 aa7.41□□□□□ -1.22
RFFL-202ENST00000394597 MAGI3Q5TCQ9 1506 aa7.41□□□□□ -1.22
RFFL-202ENST00000394597 KTN1Q86UP2 1357 aaKnown RBP7.41□□□□□ -1.22
RFFL-202ENST00000394597 EID1Q9Y6B2 187 aa7.41□□□□□ -1.22
RFFL-202ENST00000394597 ABCA8O94911 1581 aa7.4□□□□□ -1.22
RFFL-202ENST00000394597 CHD1O14646 1710 aa7.4□□□□□ -1.22
RFFL-202ENST00000394597 USP35Q9P2H5 1018 aa7.4□□□□□ -1.22
RFFL-202ENST00000394597 MORC1Q86VD1 984 aa7.39□□□□□ -1.23
RFFL-202ENST00000394597 DHX29Q7Z478 1369 aaKnown RBP7.39□□□□□ -1.23
RFFL-202ENST00000394597 DENND4BO75064 1496 aaPredicted RBP7.39□□□□□ -1.23
RFFL-202ENST00000394597 A0A0U1RQG5 324 aaPredicted RBP7.39□□□□□ -1.23
RFFL-202ENST00000394597 CCDC7Q96M83 1385 aa7.39□□□□□ -1.23
RFFL-202ENST00000394597 PNNQ9H307 717 aaKnown RBP7.39□□□□□ -1.23
RFFL-202ENST00000394597 TNNT2P45379 298 aaPredicted RBP7.38□□□□□ -1.23
RFFL-202ENST00000394597 ANP32BQ92688 251 aaKnown RBP7.38□□□□□ -1.23
RFFL-202ENST00000394597 SYCP2Q9BX26 1530 aa7.38□□□□□ -1.23
RFFL-202ENST00000394597 HDGFL2Q7Z4V5 671 aaPredicted RBP7.38□□□□□ -1.23
RFFL-202ENST00000394597 SLC52A1Q9NWF4 448 aa7.38□□□□□ -1.23
RFFL-202ENST00000394597 KIF7Q2M1P5 1343 aa7.38□□□□□ -1.23
RFFL-202ENST00000394597 TRIM44Q96DX7 344 aaPredicted RBP7.38□□□□□ -1.23
RFFL-202ENST00000394597 PANK3Q9H999 370 aa7.38□□□□□ -1.23
RFFL-202ENST00000394597 NUDCQ9Y266 331 aa7.38□□□□□ -1.23
RFFL-202ENST00000394597 PAK3O75914 559 aaPredicted RBP7.38□□□□□ -1.23
RFFL-202ENST00000394597 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.38□□□□□ -1.23
RFFL-202ENST00000394597 UHRF1BP1LA0JNW5 1464 aa7.37□□□□□ -1.23
RFFL-202ENST00000394597 TRAPPC8Q9Y2L5 1435 aa7.37□□□□□ -1.23
RFFL-202ENST00000394597 GSE1Q14687 1217 aa7.37□□□□□ -1.23
RFFL-202ENST00000394597 NBPF1Q3BBV0 1214 aa7.37□□□□□ -1.23
RFFL-202ENST00000394597 PRKRIP1Q9H875 184 aaPredicted RBP7.37□□□□□ -1.23
RFFL-202ENST00000394597 SHANK2Q9UPX8 1470 aa7.37□□□□□ -1.23
RFFL-202ENST00000394597 WASHC2AQ641Q2 1341 aa7.37□□□□□ -1.23
RFFL-202ENST00000394597 MAPKBP1O60336 1514 aa7.37□□□□□ -1.23
RFFL-202ENST00000394597 DNMT1P26358 1616 aaKnown RBP7.37□□□□□ -1.23
RFFL-202ENST00000394597 CFAP70Q5T0N1 1121 aa7.37□□□□□ -1.23
RFFL-202ENST00000394597 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.37□□□□□ -1.23
RFFL-202ENST00000394597 RPRD2Q5VT52 1461 aaKnown RBP7.36□□□□□ -1.23
RFFL-202ENST00000394597 SENP3-EIF4A1A0A087X0R7 540 aa7.36□□□□□ -1.23
RFFL-202ENST00000394597 BRPF3Q9ULD4 1205 aa7.36□□□□□ -1.23
RFFL-202ENST00000394597 DUOX2Q9NRD8 1548 aa7.36□□□□□ -1.23
RFFL-202ENST00000394597 TERF2IPQ9NYB0 399 aa7.36□□□□□ -1.23
RFFL-202ENST00000394597 RPGRIP1LQ68CZ1 1315 aa7.36□□□□□ -1.23
RFFL-202ENST00000394597 NLRP13Q86W25 1043 aa7.35□□□□□ -1.23
RFFL-202ENST00000394597 ABCC10Q5T3U5 1492 aa7.35□□□□□ -1.23
RFFL-202ENST00000394597 EVC2Q86UK5 1308 aa7.35□□□□□ -1.23
RFFL-202ENST00000394597 ERBINQ96RT1 1412 aa7.35□□□□□ -1.23
RFFL-202ENST00000394597 RTEL1-TNFRSF6BF6WH68 1400 aa7.35□□□□□ -1.23
RFFL-202ENST00000394597 CENPJQ9HC77 1338 aaPredicted RBP7.35□□□□□ -1.23
RFFL-202ENST00000394597 KDM5BQ9UGL1 1544 aa7.34□□□□□ -1.23
RFFL-202ENST00000394597 ADGRL2O95490 1459 aa7.34□□□□□ -1.23
RFFL-202ENST00000394597 ZNF518AQ6AHZ1 1483 aa7.34□□□□□ -1.23
RFFL-202ENST00000394597 TMEM132EQ6IEE7 984 aa7.34□□□□□ -1.23
RFFL-202ENST00000394597 MYBBP1AQ9BQG0 1328 aaKnown RBP7.34□□□□□ -1.24
RFFL-202ENST00000394597 PPP6R1Q9UPN7 881 aa7.33□□□□□ -1.24
RFFL-202ENST00000394597 L1TD1Q5T7N2 865 aaKnown RBP7.33□□□□□ -1.24
RFFL-202ENST00000394597 CNTLNQ9NXG0 1405 aa7.33□□□□□ -1.24
RFFL-202ENST00000394597 U2SURPO15042 1029 aaKnown RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms