RNA–Protein interactions for RNA: ENST00000394164.5

PSEN1-204, Transcript of presenilin 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PSEN1, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-204ENST00000394164 NBPF1Q3BBV0 1214 aa13.4□□□□□ -0.26
PSEN1-204ENST00000394164 ADGBQ8N7X0 1667 aa13.39□□□□□ -0.27
PSEN1-204ENST00000394164 ADGRL2O95490 1459 aa13.39□□□□□ -0.27
PSEN1-204ENST00000394164 ARHGAP5Q13017 1502 aa13.38□□□□□ -0.27
PSEN1-204ENST00000394164 NEFMP07197 916 aa13.38□□□□□ -0.27
PSEN1-204ENST00000394164 ADCY10Q96PN6 1610 aa13.37□□□□□ -0.27
PSEN1-204ENST00000394164 CHD1O14646 1710 aa13.37□□□□□ -0.27
PSEN1-204ENST00000394164 ROCK2O75116 1388 aaKnown RBP13.37□□□□□ -0.27
PSEN1-204ENST00000394164 UBE2Q2Q8WVN8 375 aa13.37□□□□□ -0.27
PSEN1-204ENST00000394164 TMC1Q8TDI8 760 aa13.36□□□□□ -0.27
PSEN1-204ENST00000394164 BRPF3Q9ULD4 1205 aa13.36□□□□□ -0.27
PSEN1-204ENST00000394164 MBD5Q9P267 1494 aa13.36□□□□□ -0.27
PSEN1-204ENST00000394164 CROCC2H7BZ55 1655 aa13.36□□□□□ -0.27
PSEN1-204ENST00000394164 SYCP2Q9BX26 1530 aa13.36□□□□□ -0.27
PSEN1-204ENST00000394164 AFAP1Q8N556 730 aa13.35□□□□□ -0.27
PSEN1-204ENST00000394164 BCORL1Q5H9F3 1711 aa13.35□□□□□ -0.27
PSEN1-204ENST00000394164 SAMD9LQ8IVG5 1584 aa13.34□□□□□ -0.27
PSEN1-204ENST00000394164 CCDC141Q6ZP82 1450 aa13.34□□□□□ -0.27
PSEN1-204ENST00000394164 PLEKHH2Q8IVE3 1493 aa13.33□□□□□ -0.28
PSEN1-204ENST00000394164 TTC37Q6PGP7 1564 aa13.32□□□□□ -0.28
PSEN1-204ENST00000394164 CCDC144AA2RUR9 1427 aa13.32□□□□□ -0.28
PSEN1-204ENST00000394164 DHX29Q7Z478 1369 aaKnown RBP13.32□□□□□ -0.28
PSEN1-204ENST00000394164 CDC42BPBQ9Y5S2 1711 aa13.32□□□□□ -0.28
PSEN1-204ENST00000394164 CC2D1BQ5T0F9 858 aaKnown RBP13.31□□□□□ -0.28
PSEN1-204ENST00000394164 FAM135AQ9P2D6 1515 aa13.3□□□□□ -0.28
PSEN1-204ENST00000394164 EFCAB2Q5VUJ9 269 aa13.29□□□□□ -0.28
PSEN1-204ENST00000394164 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.29□□□□□ -0.28
PSEN1-204ENST00000394164 SHANK2Q9UPX8 1470 aa13.29□□□□□ -0.28
PSEN1-204ENST00000394164 ZBED9Q6R2W3 1325 aa13.29□□□□□ -0.28
PSEN1-204ENST00000394164 SENP3Q9H4L4 574 aaPredicted RBP13.29□□□□□ -0.28
PSEN1-204ENST00000394164 RSPH4AQ5TD94 716 aa13.28□□□□□ -0.28
PSEN1-204ENST00000394164 ARHGEF12Q9NZN5 1544 aa13.27□□□□□ -0.29
PSEN1-204ENST00000394164 KDM5CP41229 1560 aa13.27□□□□□ -0.29
PSEN1-204ENST00000394164 TRAPPC8Q9Y2L5 1435 aa13.25□□□□□ -0.29
PSEN1-204ENST00000394164 PNISRQ8TF01 805 aaKnown RBP13.25□□□□□ -0.29
PSEN1-204ENST00000394164 RALGAPBQ86X10 1494 aa13.25□□□□□ -0.29
PSEN1-204ENST00000394164 SPAG9O60271 1321 aaKnown RBP13.25□□□□□ -0.29
PSEN1-204ENST00000394164 PREX2Q70Z35 1606 aa13.25□□□□□ -0.29
PSEN1-204ENST00000394164 PLA2R1Q13018 1463 aa13.24□□□□□ -0.29
PSEN1-204ENST00000394164 ARHGEF5Q12774 1597 aa13.23□□□□□ -0.29
PSEN1-204ENST00000394164 PANK3Q9H999 370 aa13.23□□□□□ -0.29
PSEN1-204ENST00000394164 UHRF1BP1Q6BDS2 1440 aa13.23□□□□□ -0.29
PSEN1-204ENST00000394164 ABCC2Q92887 1545 aa13.23□□□□□ -0.29
PSEN1-204ENST00000394164 KIF3BO15066 747 aa13.22□□□□□ -0.29
PSEN1-204ENST00000394164 PRAG1Q86YV5 1406 aa13.21□□□□□ -0.29
PSEN1-204ENST00000394164 DISP3Q9P2K9 1392 aa13.21□□□□□ -0.29
PSEN1-204ENST00000394164 CHGAP10645 457 aaKnown RBP13.21□□□□□ -0.3
PSEN1-204ENST00000394164 SLC4A3P48751 1232 aa13.2□□□□□ -0.3
PSEN1-204ENST00000394164 A2MP01023 1474 aa13.2□□□□□ -0.3
PSEN1-204ENST00000394164 MYBBP1AQ9BQG0 1328 aaKnown RBP13.19□□□□□ -0.3
PSEN1-204ENST00000394164 SKAP1Q86WV1 359 aa13.19□□□□□ -0.3
PSEN1-204ENST00000394164 NUDCQ9Y266 331 aa13.19□□□□□ -0.3
PSEN1-204ENST00000394164 PLCH2O75038 1416 aa13.18□□□□□ -0.3
PSEN1-204ENST00000394164 KDM5DQ9BY66 1539 aa13.18□□□□□ -0.3
PSEN1-204ENST00000394164 TESK2Q96S53 571 aa13.18□□□□□ -0.3
PSEN1-204ENST00000394164 MYO5CQ9NQX4 1742 aa13.17□□□□□ -0.3
PSEN1-204ENST00000394164 ARID4BQ4LE39 1312 aaPredicted RBP13.17□□□□□ -0.3
PSEN1-204ENST00000394164 CDCA7LQ96GN5 454 aa13.17□□□□□ -0.3
PSEN1-204ENST00000394164 POLR1AO95602 1720 aaPredicted RBP13.17□□□□□ -0.3
PSEN1-204ENST00000394164 KTN1Q86UP2 1357 aaKnown RBP13.16□□□□□ -0.3
PSEN1-204ENST00000394164 ZCCHC11Q5TAX3 1644 aaKnown RBP13.16□□□□□ -0.3
PSEN1-204ENST00000394164 TMF1P82094 1093 aa13.16□□□□□ -0.3
PSEN1-204ENST00000394164 SCAPERQ9BY12 1400 aa13.16□□□□□ -0.3
PSEN1-204ENST00000394164 PDE4AP27815 886 aa13.15□□□□□ -0.3
PSEN1-204ENST00000394164 RALBP1Q15311 655 aa13.15□□□□□ -0.3
PSEN1-204ENST00000394164 WASHC2CQ9Y4E1 1318 aa13.15□□□□□ -0.3
PSEN1-204ENST00000394164 SHROOM2Q13796 1616 aa13.15□□□□□ -0.3
PSEN1-204ENST00000394164 GSE1Q14687 1217 aa13.15□□□□□ -0.3
PSEN1-204ENST00000394164 FRAT1Q92837 279 aaPredicted RBP13.15□□□□□ -0.3
PSEN1-204ENST00000394164 PER1O15534 1290 aaPredicted RBP13.14□□□□□ -0.31
PSEN1-204ENST00000394164 NUTM2DQ5VT03 806 aaPredicted RBP13.14□□□□□ -0.31
PSEN1-204ENST00000394164 NLRP13Q86W25 1043 aa13.13□□□□□ -0.31
PSEN1-204ENST00000394164 GGT6Q6P531 493 aa13.13□□□□□ -0.31
PSEN1-204ENST00000394164 EXOC6Q8TAG9 804 aa13.13□□□□□ -0.31
PSEN1-204ENST00000394164 PKNOX2Q96KN3 472 aa13.13□□□□□ -0.31
PSEN1-204ENST00000394164 DUOX2Q9NRD8 1548 aa13.12□□□□□ -0.31
PSEN1-204ENST00000394164 PPM1GO15355 546 aaPredicted RBP13.12□□□□□ -0.31
PSEN1-204ENST00000394164 PLIN1O60240 522 aa13.12□□□□□ -0.31
PSEN1-204ENST00000394164 USP35Q9P2H5 1018 aa13.12□□□□□ -0.31
PSEN1-204ENST00000394164 CFAP70Q5T0N1 1121 aa13.12□□□□□ -0.31
PSEN1-204ENST00000394164 ERBINQ96RT1 1412 aa13.12□□□□□ -0.31
PSEN1-204ENST00000394164 SMG6Q86US8 1419 aaKnown RBP13.11□□□□□ -0.31
PSEN1-204ENST00000394164 BRD4O60885 1362 aaPredicted RBP13.1□□□□□ -0.31
PSEN1-204ENST00000394164 NFKBIBQ15653 356 aa13.1□□□□□ -0.31
PSEN1-204ENST00000394164 KNSTRNQ9Y448 316 aa13.1□□□□□ -0.31
PSEN1-204ENST00000394164 TRPM1Q7Z4N2 1603 aa13.1□□□□□ -0.31
PSEN1-204ENST00000394164 NPM1P06748 294 aaKnown RBP eCLIP13.09□□□□□ -0.31
PSEN1-204ENST00000394164 FANCAO15360 1455 aa13.09□□□□□ -0.31
PSEN1-204ENST00000394164 UNC13BO14795 1591 aa13.09□□□□□ -0.31
PSEN1-204ENST00000394164 ABCC1P33527 1531 aa13.08□□□□□ -0.32
PSEN1-204ENST00000394164 TNNT2P45379 298 aaPredicted RBP13.07□□□□□ -0.32
PSEN1-204ENST00000394164 ADAMTS8Q9UP79 889 aa13.07□□□□□ -0.32
PSEN1-204ENST00000394164 UGGT1Q9NYU2 1555 aa13.07□□□□□ -0.32
PSEN1-204ENST00000394164 ADGRF5Q8IZF2 1346 aa13.07□□□□□ -0.32
PSEN1-204ENST00000394164 CFAP65Q6ZU64 1925 aaKnown RBP13.07□□□□□ -0.32
PSEN1-204ENST00000394164 IQGAP3Q86VI3 1631 aa13.07□□□□□ -0.32
PSEN1-204ENST00000394164 BACH2Q9BYV9 841 aa13.07□□□□□ -0.32
PSEN1-204ENST00000394164 RCAN3Q9UKA8 241 aa13.07□□□□□ -0.32
PSEN1-204ENST00000394164 MAST1Q9Y2H9 1570 aa13.06□□□□□ -0.32
PSEN1-204ENST00000394164 CLASP1Q7Z460 1538 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms