RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ZNF777Q9ULD5 760 aaPredicted RBP13.46□□□□□ -0.26
COL17A1-203ENST00000393211 ATP10BO94823 1461 aa13.45□□□□□ -0.26
COL17A1-203ENST00000393211 JPH4Q96JJ6 628 aa13.45□□□□□ -0.26
COL17A1-203ENST00000393211 ZMYM4Q5VZL5 1548 aa13.45□□□□□ -0.26
COL17A1-203ENST00000393211 LAMC1P11047 1609 aa13.45□□□□□ -0.26
COL17A1-203ENST00000393211 CCDC136Q96JN2 1154 aa13.44□□□□□ -0.26
COL17A1-203ENST00000393211 PDE3BQ13370 1112 aa13.43□□□□□ -0.26
COL17A1-203ENST00000393211 ZNF326Q5BKZ1 582 aaKnown RBP13.43□□□□□ -0.26
COL17A1-203ENST00000393211 WASHC2CQ9Y4E1 1318 aa13.42□□□□□ -0.26
COL17A1-203ENST00000393211 CCDC141Q6ZP82 1450 aa13.42□□□□□ -0.26
COL17A1-203ENST00000393211 MAST1Q9Y2H9 1570 aa13.41□□□□□ -0.26
COL17A1-203ENST00000393211 TRPM1Q7Z4N2 1603 aa13.41□□□□□ -0.26
COL17A1-203ENST00000393211 NOP58Q9Y2X3 529 aaKnown RBP13.41□□□□□ -0.26
COL17A1-203ENST00000393211 PREX2Q70Z35 1606 aa13.4□□□□□ -0.26
COL17A1-203ENST00000393211 FAM135AQ9P2D6 1515 aa13.4□□□□□ -0.26
COL17A1-203ENST00000393211 GPRASP1Q5JY77 1395 aa13.4□□□□□ -0.26
COL17A1-203ENST00000393211 UNC13BO14795 1591 aa13.4□□□□□ -0.27
COL17A1-203ENST00000393211 PARD3Q8TEW0 1356 aa13.39□□□□□ -0.27
COL17A1-203ENST00000393211 ST20-MTHFSA0A0A6YYL1 179 aa13.39□□□□□ -0.27
COL17A1-203ENST00000393211 POLR3GLQ9BT43 218 aa13.39□□□□□ -0.27
COL17A1-203ENST00000393211 PRAG1Q86YV5 1406 aa13.39□□□□□ -0.27
COL17A1-203ENST00000393211 NLRP13Q86W25 1043 aa13.39□□□□□ -0.27
COL17A1-203ENST00000393211 PHF23Q9BUL5 403 aaPredicted RBP13.39□□□□□ -0.27
COL17A1-203ENST00000393211 ANP32AP39687 249 aaKnown RBP13.38□□□□□ -0.27
COL17A1-203ENST00000393211 DCAF11Q8TEB1 546 aa13.38□□□□□ -0.27
COL17A1-203ENST00000393211 EIF2AK4Q9P2K8 1649 aaKnown RBP13.37□□□□□ -0.27
COL17A1-203ENST00000393211 SAMD9LQ8IVG5 1584 aa13.37□□□□□ -0.27
COL17A1-203ENST00000393211 IPO9Q96P70 1041 aaKnown RBP13.36□□□□□ -0.27
COL17A1-203ENST00000393211 CDC42BPBQ9Y5S2 1711 aa13.36□□□□□ -0.27
COL17A1-203ENST00000393211 CCDC144AA2RUR9 1427 aa13.36□□□□□ -0.27
COL17A1-203ENST00000393211 RRP1P56182 461 aaKnown RBP13.35□□□□□ -0.27
COL17A1-203ENST00000393211 PRDM15P57071 1507 aaPredicted RBP13.35□□□□□ -0.27
COL17A1-203ENST00000393211 ATP10AO60312 1499 aa13.35□□□□□ -0.27
COL17A1-203ENST00000393211 PLEKHH2Q8IVE3 1493 aa13.35□□□□□ -0.27
COL17A1-203ENST00000393211 PLXNC1O60486 1568 aa13.34□□□□□ -0.27
COL17A1-203ENST00000393211 COL17A1Q9UMD9 1497 aaPredicted RBP13.34□□□□□ -0.27
COL17A1-203ENST00000393211 IQGAP3Q86VI3 1631 aa13.34□□□□□ -0.27
COL17A1-203ENST00000393211 TCERG1O14776 1098 aaKnown RBP13.34□□□□□ -0.27
COL17A1-203ENST00000393211 KDM2AQ9Y2K7 1162 aa13.33□□□□□ -0.28
COL17A1-203ENST00000393211 PER1O15534 1290 aaPredicted RBP13.32□□□□□ -0.28
COL17A1-203ENST00000393211 MS4A1P11836 297 aa13.32□□□□□ -0.28
COL17A1-203ENST00000393211 HNRNPMP52272 730 aaKnown RBP eCLIP13.32□□□□□ -0.28
COL17A1-203ENST00000393211 RCAN3Q9UKA8 241 aa13.32□□□□□ -0.28
COL17A1-203ENST00000393211 BLMP54132 1417 aaPredicted RBP13.31□□□□□ -0.28
COL17A1-203ENST00000393211 FBLN2P98095 1184 aa13.31□□□□□ -0.28
COL17A1-203ENST00000393211 A2MP01023 1474 aa13.3□□□□□ -0.28
COL17A1-203ENST00000393211 PLA2R1Q13018 1463 aa13.29□□□□□ -0.28
COL17A1-203ENST00000393211 MAGI2Q86UL8 1455 aa13.29□□□□□ -0.28
COL17A1-203ENST00000393211 ZBTB47Q9UFB7 747 aaPredicted RBP13.29□□□□□ -0.28
COL17A1-203ENST00000393211 MYO5CQ9NQX4 1742 aa13.29□□□□□ -0.28
COL17A1-203ENST00000393211 DUOX2Q9NRD8 1548 aa13.28□□□□□ -0.28
COL17A1-203ENST00000393211 DEKP35659 375 aaKnown RBP13.28□□□□□ -0.28
COL17A1-203ENST00000393211 CNGB1Q14028 1251 aaPredicted RBP13.28□□□□□ -0.28
COL17A1-203ENST00000393211 RNF17Q9BXT8 1623 aaKnown RBP13.27□□□□□ -0.28
COL17A1-203ENST00000393211 SYCP2Q9BX26 1530 aa13.27□□□□□ -0.29
COL17A1-203ENST00000393211 ERBINQ96RT1 1412 aa13.27□□□□□ -0.29
COL17A1-203ENST00000393211 PAK3O75914 559 aaPredicted RBP13.26□□□□□ -0.29
COL17A1-203ENST00000393211 STAC3Q96MF2 364 aa13.26□□□□□ -0.29
COL17A1-203ENST00000393211 TESK2Q96S53 571 aa13.26□□□□□ -0.29
COL17A1-203ENST00000393211 TMF1P82094 1093 aa13.25□□□□□ -0.29
COL17A1-203ENST00000393211 EXOC6Q8TAG9 804 aa13.25□□□□□ -0.29
COL17A1-203ENST00000393211 ARHGAP5Q13017 1502 aa13.25□□□□□ -0.29
COL17A1-203ENST00000393211 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL17A1-203ENST00000393211 SHROOM2Q13796 1616 aa13.24□□□□□ -0.29
COL17A1-203ENST00000393211 TTC37Q6PGP7 1564 aa13.23□□□□□ -0.29
COL17A1-203ENST00000393211 NBPF1Q3BBV0 1214 aa13.23□□□□□ -0.29
COL17A1-203ENST00000393211 DISP3Q9P2K9 1392 aa13.23□□□□□ -0.29
COL17A1-203ENST00000393211 PDE4AP27815 886 aa13.21□□□□□ -0.29
COL17A1-203ENST00000393211 RTL5Q5HYW3 569 aaPredicted RBP13.21□□□□□ -0.29
COL17A1-203ENST00000393211 BACH2Q9BYV9 841 aa13.21□□□□□ -0.29
COL17A1-203ENST00000393211 PANK3Q9H999 370 aa13.21□□□□□ -0.3
COL17A1-203ENST00000393211 USP35Q9P2H5 1018 aa13.21□□□□□ -0.3
COL17A1-203ENST00000393211 IQGAP1P46940 1657 aa13.2□□□□□ -0.3
COL17A1-203ENST00000393211 CLASP1Q7Z460 1538 aa13.2□□□□□ -0.3
COL17A1-203ENST00000393211 ABCC2Q92887 1545 aa13.2□□□□□ -0.3
COL17A1-203ENST00000393211 CDCA8Q53HL2 280 aa13.2□□□□□ -0.3
COL17A1-203ENST00000393211 RGL3Q3MIN7 710 aa13.19□□□□□ -0.3
COL17A1-203ENST00000393211 SYNMO15061 1565 aa13.19□□□□□ -0.3
COL17A1-203ENST00000393211 SCAPERQ9BY12 1400 aa13.18□□□□□ -0.3
COL17A1-203ENST00000393211 NPC1L1Q9UHC9 1359 aa13.18□□□□□ -0.3
COL17A1-203ENST00000393211 MADDQ8WXG6 1647 aa13.18□□□□□ -0.3
COL17A1-203ENST00000393211 WDR7Q9Y4E6 1490 aa13.17□□□□□ -0.3
COL17A1-203ENST00000393211 PLCH2O75038 1416 aa13.17□□□□□ -0.3
COL17A1-203ENST00000393211 NEURL4Q96JN8 1562 aa13.17□□□□□ -0.3
COL17A1-203ENST00000393211 SLC24A1O60721 1099 aa13.17□□□□□ -0.3
COL17A1-203ENST00000393211 NBR1Q14596 966 aa13.17□□□□□ -0.3
COL17A1-203ENST00000393211 CDCA7LQ96GN5 454 aa13.17□□□□□ -0.3
COL17A1-203ENST00000393211 DDRGK1Q96HY6 314 aa13.17□□□□□ -0.3
COL17A1-203ENST00000393211 SPHKAPQ2M3C7 1700 aa13.16□□□□□ -0.3
COL17A1-203ENST00000393211 TRPM2O94759 1503 aa13.16□□□□□ -0.3
COL17A1-203ENST00000393211 CC2D1BQ5T0F9 858 aaKnown RBP13.16□□□□□ -0.3
COL17A1-203ENST00000393211 PIK3C2GO75747 1445 aa13.16□□□□□ -0.3
COL17A1-203ENST00000393211 KIAA1210Q9ULL0 1709 aa13.15□□□□□ -0.3
COL17A1-203ENST00000393211 PPM1GO15355 546 aaPredicted RBP13.15□□□□□ -0.3
COL17A1-203ENST00000393211 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.15□□□□□ -0.3
COL17A1-203ENST00000393211 RTEL1-TNFRSF6BF6WH68 1400 aa13.15□□□□□ -0.3
COL17A1-203ENST00000393211 CEP152O94986 1710 aa13.15□□□□□ -0.3
COL17A1-203ENST00000393211 ARAP3Q8WWN8 1544 aa13.15□□□□□ -0.3
COL17A1-203ENST00000393211 ABCC1P33527 1531 aa13.14□□□□□ -0.31
COL17A1-203ENST00000393211 SCAF11Q99590 1463 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms