RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 IDI1Q13907 227 aa13.91□□□□□ -0.18
COL6A3-205ENST00000392004 ABCC5O15440 1437 aa13.91□□□□□ -0.18
COL6A3-205ENST00000392004 TMF1P82094 1093 aa13.91□□□□□ -0.18
COL6A3-205ENST00000392004 NBPF1Q3BBV0 1214 aa13.9□□□□□ -0.18
COL6A3-205ENST00000392004 MIA2Q96PC5 1412 aa13.9□□□□□ -0.18
COL6A3-205ENST00000392004 PLEKHH2Q8IVE3 1493 aa13.9□□□□□ -0.18
COL6A3-205ENST00000392004 PIP4K2BP78356 416 aa13.89□□□□□ -0.19
COL6A3-205ENST00000392004 NUTM2GQ5VZR2 741 aa13.89□□□□□ -0.19
COL6A3-205ENST00000392004 PLCH2O75038 1416 aa13.89□□□□□ -0.19
COL6A3-205ENST00000392004 THEMISQ8N1K5 641 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-205ENST00000392004 KIF14Q15058 1648 aa13.88□□□□□ -0.19
COL6A3-205ENST00000392004 HNRNPUQ00839 825 aaKnown RBP eCLIP13.87□□□□□ -0.19
COL6A3-205ENST00000392004 PROSER2Q86WR7 435 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-205ENST00000392004 CCDC9Q9Y3X0 531 aaKnown RBP13.87□□□□□ -0.19
COL6A3-205ENST00000392004 CCDC141Q6ZP82 1450 aa13.87□□□□□ -0.19
COL6A3-205ENST00000392004 LTV1Q96GA3 475 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-205ENST00000392004 U2SURPO15042 1029 aaKnown RBP13.86□□□□□ -0.19
COL6A3-205ENST00000392004 PRKCSHP14314 528 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-205ENST00000392004 SUPT6HQ7KZ85 1726 aaKnown RBP13.85□□□□□ -0.19
COL6A3-205ENST00000392004 CTTNBP2Q8WZ74 1663 aa13.85□□□□□ -0.19
COL6A3-205ENST00000392004 RRBP1Q9P2E9 1410 aaKnown RBP13.85□□□□□ -0.19
COL6A3-205ENST00000392004 CDCA8Q53HL2 280 aa13.85□□□□□ -0.19
COL6A3-205ENST00000392004 ANKLE2Q86XL3 938 aa13.85□□□□□ -0.19
COL6A3-205ENST00000392004 WDR43Q15061 677 aaKnown RBP eCLIP13.84□□□□□ -0.19
COL6A3-205ENST00000392004 POGZQ7Z3K3 1410 aa13.84□□□□□ -0.19
COL6A3-205ENST00000392004 XPCQ01831 940 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-205ENST00000392004 PTPRKQ15262 1439 aa13.84□□□□□ -0.19
COL6A3-205ENST00000392004 PMFBP1Q8TBY8 1022 aa13.83□□□□□ -0.19
COL6A3-205ENST00000392004 ARXQ96QS3 562 aa13.83□□□□□ -0.2
COL6A3-205ENST00000392004 NCOA1Q15788 1441 aa13.83□□□□□ -0.2
COL6A3-205ENST00000392004 NAIPQ13075 1403 aa13.82□□□□□ -0.2
COL6A3-205ENST00000392004 SYCP2Q9BX26 1530 aa13.82□□□□□ -0.2
COL6A3-205ENST00000392004 CABP2Q9NPB3 220 aa13.81□□□□□ -0.2
COL6A3-205ENST00000392004 FKBP8Q14318 412 aa13.81□□□□□ -0.2
COL6A3-205ENST00000392004 TSPOAP1O95153 1857 aa13.8□□□□□ -0.2
COL6A3-205ENST00000392004 CSB-PGBD3P0DP91 1061 aa13.8□□□□□ -0.2
COL6A3-205ENST00000392004 WAPLQ7Z5K2 1190 aa13.8□□□□□ -0.2
COL6A3-205ENST00000392004 SLC52A1Q9NWF4 448 aa13.8□□□□□ -0.2
COL6A3-205ENST00000392004 PRAM1Q96QH2 718 aa13.8□□□□□ -0.2
COL6A3-205ENST00000392004 ATF3P18847 181 aa13.79□□□□□ -0.2
COL6A3-205ENST00000392004 NBPF8Q3BBV2 869 aa13.79□□□□□ -0.2
COL6A3-205ENST00000392004 MORC1Q86VD1 984 aa13.79□□□□□ -0.2
COL6A3-205ENST00000392004 HDGFL2Q7Z4V5 671 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-205ENST00000392004 DHX29Q7Z478 1369 aaKnown RBP13.78□□□□□ -0.2
COL6A3-205ENST00000392004 CANXP27824 592 aaKnown RBP13.77□□□□□ -0.2
COL6A3-205ENST00000392004 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.77□□□□□ -0.2
COL6A3-205ENST00000392004 LAS1LQ9Y4W2 734 aaKnown RBP13.77□□□□□ -0.2
COL6A3-205ENST00000392004 ESCO1Q5FWF5 840 aa13.77□□□□□ -0.21
COL6A3-205ENST00000392004 TEX14Q8IWB6 1497 aa13.77□□□□□ -0.21
COL6A3-205ENST00000392004 PTPN23Q9H3S7 1636 aa13.76□□□□□ -0.21
COL6A3-205ENST00000392004 PSME1Q06323 249 aa13.76□□□□□ -0.21
COL6A3-205ENST00000392004 HFM1A2PYH4 1435 aa13.76□□□□□ -0.21
COL6A3-205ENST00000392004 YEATS2Q9ULM3 1422 aa13.76□□□□□ -0.21
COL6A3-205ENST00000392004 USP35Q9P2H5 1018 aa13.74□□□□□ -0.21
COL6A3-205ENST00000392004 NUTM2BA6NNL0 878 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-205ENST00000392004 NUTM2EB1AL46 878 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-205ENST00000392004 NUTM2AQ8IVF1 878 aaPredicted RBP13.74□□□□□ -0.21
COL6A3-205ENST00000392004 ADGRF5Q8IZF2 1346 aa13.74□□□□□ -0.21
COL6A3-205ENST00000392004 MAGI3Q5TCQ9 1506 aa13.73□□□□□ -0.21
COL6A3-205ENST00000392004 NCKAP5LQ9HCH0 1330 aa13.73□□□□□ -0.21
COL6A3-205ENST00000392004 PANK3Q9H999 370 aa13.73□□□□□ -0.21
COL6A3-205ENST00000392004 TIMELESSQ9UNS1 1208 aa13.73□□□□□ -0.21
COL6A3-205ENST00000392004 ERBINQ96RT1 1412 aa13.72□□□□□ -0.21
COL6A3-205ENST00000392004 A2MP01023 1474 aa13.71□□□□□ -0.21
COL6A3-205ENST00000392004 ZNF518AQ6AHZ1 1483 aa13.71□□□□□ -0.21
COL6A3-205ENST00000392004 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.71□□□□□ -0.21
COL6A3-205ENST00000392004 CENPJQ9HC77 1338 aaPredicted RBP13.71□□□□□ -0.22
COL6A3-205ENST00000392004 CFAP53Q96M91 514 aa13.7□□□□□ -0.22
COL6A3-205ENST00000392004 USP47Q96K76 1375 aa13.7□□□□□ -0.22
COL6A3-205ENST00000392004 KIAA1107Q9UPP5 1409 aa13.7□□□□□ -0.22
COL6A3-205ENST00000392004 TERF2IPQ9NYB0 399 aa13.69□□□□□ -0.22
COL6A3-205ENST00000392004 ZMYM3Q14202 1370 aa13.69□□□□□ -0.22
COL6A3-205ENST00000392004 CFAP65Q6ZU64 1925 aaKnown RBP13.69□□□□□ -0.22
COL6A3-205ENST00000392004 SLC12A5Q9H2X9 1139 aa13.69□□□□□ -0.22
COL6A3-205ENST00000392004 AMOTL2Q9Y2J4 779 aa13.69□□□□□ -0.22
COL6A3-205ENST00000392004 GGNBP2Q9H3C7 697 aa13.68□□□□□ -0.22
COL6A3-205ENST00000392004 AMPHP49418 695 aa13.68□□□□□ -0.22
COL6A3-205ENST00000392004 KDM5BQ9UGL1 1544 aa13.68□□□□□ -0.22
COL6A3-205ENST00000392004 WDR97A6NE52 1622 aa13.68□□□□□ -0.22
COL6A3-205ENST00000392004 PPP6R1Q9UPN7 881 aa13.67□□□□□ -0.22
COL6A3-205ENST00000392004 EVC2Q86UK5 1308 aa13.67□□□□□ -0.22
COL6A3-205ENST00000392004 IRX6P78412 446 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-205ENST00000392004 FOXO3O43524 673 aa13.67□□□□□ -0.22
COL6A3-205ENST00000392004 RBM19Q9Y4C8 960 aaKnown RBP13.67□□□□□ -0.22
COL6A3-205ENST00000392004 SAMD9Q5K651 1589 aa13.67□□□□□ -0.22
COL6A3-205ENST00000392004 U2AF1L5P0DN76 240 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-205ENST00000392004 U2AF1Q01081 240 aaKnown RBP eCLIP13.66□□□□□ -0.22
COL6A3-205ENST00000392004 RIMBP3CA6NJZ7 1639 aa13.66□□□□□ -0.22
COL6A3-205ENST00000392004 RIMBP3BA6NNM3 1639 aa13.66□□□□□ -0.22
COL6A3-205ENST00000392004 RIMBP3Q9UFD9 1639 aa13.66□□□□□ -0.22
COL6A3-205ENST00000392004 TNRQ92752 1358 aa13.66□□□□□ -0.22
COL6A3-205ENST00000392004 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.65□□□□□ -0.22
COL6A3-205ENST00000392004 ROCK1Q13464 1354 aa13.65□□□□□ -0.22
COL6A3-205ENST00000392004 NPM2Q86SE8 214 aaKnown RBP13.65□□□□□ -0.22
COL6A3-205ENST00000392004 CABP1Q9NZU7 370 aa13.65□□□□□ -0.22
COL6A3-205ENST00000392004 NLRP6P59044 892 aa13.64□□□□□ -0.23
COL6A3-205ENST00000392004 ABCC10Q5T3U5 1492 aa13.64□□□□□ -0.23
COL6A3-205ENST00000392004 EIF3AQ14152 1382 aaKnown RBP13.64□□□□□ -0.23
COL6A3-205ENST00000392004 MEX3CQ5U5Q3 659 aaKnown RBP13.64□□□□□ -0.23
COL6A3-205ENST00000392004 ABCA8O94911 1581 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms