RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 SPAG9O60271 1321 aaKnown RBP15.47■□□□□ 0.07
CHD3-203ENST00000380358 TSR1Q2NL82 804 aaKnown RBP15.47■□□□□ 0.07
CHD3-203ENST00000380358 CCDC34Q96HJ3 373 aa15.47■□□□□ 0.07
CHD3-203ENST00000380358 APPP05067 770 aa15.47■□□□□ 0.07
CHD3-203ENST00000380358 ZFYVE27Q5T4F4 411 aa15.47■□□□□ 0.07
CHD3-203ENST00000380358 SMC4Q9NTJ3 1288 aa15.46■□□□□ 0.07
CHD3-203ENST00000380358 VPS37DQ86XT2 251 aa15.45■□□□□ 0.06
CHD3-203ENST00000380358 DHX37Q8IY37 1157 aaKnown RBP15.45■□□□□ 0.06
CHD3-203ENST00000380358 CCDC43Q96MW1 224 aaKnown RBP15.45■□□□□ 0.06
CHD3-203ENST00000380358 IPO8O15397 1037 aaKnown RBP15.45■□□□□ 0.06
CHD3-203ENST00000380358 FAM184AQ8NB25 1140 aa15.43■□□□□ 0.06
CHD3-203ENST00000380358 KIF16BQ96L93 1317 aa15.43■□□□□ 0.06
CHD3-203ENST00000380358 SYAP1Q96A49 352 aaPredicted RBP15.43■□□□□ 0.06
CHD3-203ENST00000380358 NOL10Q9BSC4 688 aaKnown RBP15.43■□□□□ 0.06
CHD3-203ENST00000380358 KANK1Q14678 1352 aa15.43■□□□□ 0.06
CHD3-203ENST00000380358 ERCC6Q03468 1493 aa15.43■□□□□ 0.06
CHD3-203ENST00000380358 SETQ01105 290 aaPredicted RBP15.43■□□□□ 0.06
CHD3-203ENST00000380358 NAP1L1P55209 391 aaKnown RBP15.42■□□□□ 0.06
CHD3-203ENST00000380358 DCAF8L1A6NGE4 600 aa15.42■□□□□ 0.06
CHD3-203ENST00000380358 EIF2S2P20042 333 aaKnown RBP15.42■□□□□ 0.06
CHD3-203ENST00000380358 RRP7AQ9Y3A4 280 aaKnown RBP15.42■□□□□ 0.06
CHD3-203ENST00000380358 CALD1Q05682 793 aaKnown RBP15.41■□□□□ 0.06
CHD3-203ENST00000380358 TMEM132AQ24JP5 1023 aa15.41■□□□□ 0.06
CHD3-203ENST00000380358 RRP12Q5JTH9 1297 aaKnown RBP15.41■□□□□ 0.06
CHD3-203ENST00000380358 TPM2P07951 284 aa15.4■□□□□ 0.06
CHD3-203ENST00000380358 ZNF428Q96B54 188 aa15.4■□□□□ 0.06
CHD3-203ENST00000380358 ODF2Q5BJF6 829 aa15.39■□□□□ 0.05
CHD3-203ENST00000380358 CT47A1Q5JQC4 288 aaPredicted RBP15.39■□□□□ 0.05
CHD3-203ENST00000380358 FAM177BA6PVY3 158 aa15.39■□□□□ 0.05
CHD3-203ENST00000380358 WDR70Q9NW82 654 aa15.39■□□□□ 0.05
CHD3-203ENST00000380358 CALRP27797 417 aaKnown RBP15.38■□□□□ 0.05
CHD3-203ENST00000380358 PPM1FP49593 454 aaPredicted RBP15.38■□□□□ 0.05
CHD3-203ENST00000380358 AMOTL1Q8IY63 956 aa15.37■□□□□ 0.05
CHD3-203ENST00000380358 EIF4G1Q04637 1599 aaKnown RBP15.37■□□□□ 0.05
CHD3-203ENST00000380358 BCL2L13Q9BXK5 485 aa15.37■□□□□ 0.05
CHD3-203ENST00000380358 IKQ13123 557 aaPredicted RBP15.36■□□□□ 0.05
CHD3-203ENST00000380358 SYNE3Q6ZMZ3 975 aa15.36■□□□□ 0.05
CHD3-203ENST00000380358 RWDD1Q9H446 243 aaPredicted RBP15.36■□□□□ 0.05
CHD3-203ENST00000380358 RSF1Q96T23 1441 aaPredicted RBP15.36■□□□□ 0.05
CHD3-203ENST00000380358 CCAR1Q8IX12 1150 aaKnown RBP15.36■□□□□ 0.05
CHD3-203ENST00000380358 GOLGA6L3A6NEY3 463 aa15.36■□□□□ 0.05
CHD3-203ENST00000380358 PLIN1O60240 522 aa15.36■□□□□ 0.05
CHD3-203ENST00000380358 GOLGA6L19H0YKK7 550 aa15.35■□□□□ 0.05
CHD3-203ENST00000380358 TCERG1O14776 1098 aaKnown RBP15.35■□□□□ 0.05
CHD3-203ENST00000380358 TTLL5Q6EMB2 1281 aa15.34■□□□□ 0.05
CHD3-203ENST00000380358 CLIP1P30622 1438 aa15.34■□□□□ 0.05
CHD3-203ENST00000380358 CCDC27Q2M243 656 aa15.34■□□□□ 0.05
CHD3-203ENST00000380358 R3HCC1Q9Y3T6 440 aaKnown RBP15.34■□□□□ 0.05
CHD3-203ENST00000380358 BECN2A8MW95 431 aa15.34■□□□□ 0.05
CHD3-203ENST00000380358 NFXL1Q6ZNB6 911 aa15.33■□□□□ 0.05
CHD3-203ENST00000380358 C1orf141Q5JVX7 400 aa15.33■□□□□ 0.04
CHD3-203ENST00000380358 EID1Q9Y6B2 187 aa15.32■□□□□ 0.04
CHD3-203ENST00000380358 CSPP1Q1MSJ5 1256 aa15.32■□□□□ 0.04
CHD3-203ENST00000380358 HSP90AB2PQ58FF8 381 aa15.32■□□□□ 0.04
CHD3-203ENST00000380358 TPM1P09493 284 aa15.32■□□□□ 0.04
CHD3-203ENST00000380358 STK11IPQ8N1F8 1099 aa15.31■□□□□ 0.04
CHD3-203ENST00000380358 HMMRO75330 724 aa15.31■□□□□ 0.04
CHD3-203ENST00000380358 PLCD4Q9BRC7 762 aa15.31■□□□□ 0.04
CHD3-203ENST00000380358 TRIM29Q14134 588 aa15.3■□□□□ 0.04
CHD3-203ENST00000380358 RBM33Q96EV2 1170 aaKnown RBP15.3■□□□□ 0.04
CHD3-203ENST00000380358 CFAP44Q96MT7 982 aa15.3■□□□□ 0.04
CHD3-203ENST00000380358 ZNF771Q7L3S4 317 aaPredicted RBP15.3■□□□□ 0.04
CHD3-203ENST00000380358 CCDC70Q6NSX1 233 aa15.29■□□□□ 0.04
CHD3-203ENST00000380358 CCDC97Q96F63 343 aaPredicted RBP15.29■□□□□ 0.04
CHD3-203ENST00000380358 ANKRD45Q5TZF3 282 aa15.29■□□□□ 0.04
CHD3-203ENST00000380358 AK7Q96M32 723 aa15.29■□□□□ 0.04
CHD3-203ENST00000380358 RCAN3Q9UKA8 241 aa15.29■□□□□ 0.04
CHD3-203ENST00000380358 USP35Q9P2H5 1018 aa15.29■□□□□ 0.04
CHD3-203ENST00000380358 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.29■□□□□ 0.04
CHD3-203ENST00000380358 CHMP4CQ96CF2 233 aa15.28■□□□□ 0.04
CHD3-203ENST00000380358 ANO2Q9NQ90 1003 aa15.27■□□□□ 0.04
CHD3-203ENST00000380358 HOMER1Q86YM7 354 aa15.27■□□□□ 0.04
CHD3-203ENST00000380358 TTC5Q8N0Z6 440 aa15.27■□□□□ 0.04
CHD3-203ENST00000380358 EPS15P42566 896 aa15.26■□□□□ 0.03
CHD3-203ENST00000380358 CCNB3Q8WWL7 1395 aa15.26■□□□□ 0.03
CHD3-203ENST00000380358 TRAK1Q9UPV9 953 aa15.26■□□□□ 0.03
CHD3-203ENST00000380358 ROCK2O75116 1388 aaKnown RBP15.26■□□□□ 0.03
CHD3-203ENST00000380358 ST18O60284 1047 aa15.26■□□□□ 0.03
CHD3-203ENST00000380358 C9orf78Q9NZ63 289 aaPredicted RBP15.26■□□□□ 0.03
CHD3-203ENST00000380358 KTN1Q86UP2 1357 aaKnown RBP15.25■□□□□ 0.03
CHD3-203ENST00000380358 HSPA5P11021 654 aaKnown RBP15.25■□□□□ 0.03
CHD3-203ENST00000380358 CHMP4BP1P59074 171 aa15.25■□□□□ 0.03
CHD3-203ENST00000380358 ATP2B2Q01814 1243 aa15.24■□□□□ 0.03
CHD3-203ENST00000380358 PKD2Q13563 968 aa15.24■□□□□ 0.03
CHD3-203ENST00000380358 CPLX1O14810 134 aa15.24■□□□□ 0.03
CHD3-203ENST00000380358 AIMP1Q12904 312 aaKnown RBP15.24■□□□□ 0.03
CHD3-203ENST00000380358 IPO7O95373 1038 aaKnown RBP15.24■□□□□ 0.03
CHD3-203ENST00000380358 RBM19Q9Y4C8 960 aaKnown RBP15.24■□□□□ 0.03
CHD3-203ENST00000380358 NUTM2GQ5VZR2 741 aa15.23■□□□□ 0.03
CHD3-203ENST00000380358 PMFBP1Q8TBY8 1022 aa15.23■□□□□ 0.03
CHD3-203ENST00000380358 ANKRD62A6NC57 917 aa15.22■□□□□ 0.03
CHD3-203ENST00000380358 PHF14O94880 888 aa15.22■□□□□ 0.03
CHD3-203ENST00000380358 DIAPH3Q9NSV4 1193 aa15.22■□□□□ 0.03
CHD3-203ENST00000380358 KIF3AQ9Y496 699 aa15.22■□□□□ 0.03
CHD3-203ENST00000380358 CCDC47Q96A33 483 aaKnown RBP15.22■□□□□ 0.03
CHD3-203ENST00000380358 TEFQ10587 303 aa15.21■□□□□ 0.03
CHD3-203ENST00000380358 BICD2Q8TD16 824 aa15.21■□□□□ 0.03
CHD3-203ENST00000380358 MYCNP04198 464 aaPredicted RBP15.21■□□□□ 0.03
CHD3-203ENST00000380358 ERICH2A1L162 156 aa15.21■□□□□ 0.03
CHD3-203ENST00000380358 PDILTQ8N807 584 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 186 ms