RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 ARHGEF1Q92888 912 aaKnown RBP10.38□□□□□ -0.75
USP48-202ENST00000374730 P3H3Q8IVL6 736 aa10.37□□□□□ -0.75
USP48-202ENST00000374730 KCNV2Q8TDN2 545 aa10.37□□□□□ -0.75
USP48-202ENST00000374730 PPP1R3GB7ZBB8 358 aa10.36□□□□□ -0.75
USP48-202ENST00000374730 ZBED2Q9BTP6 218 aa10.36□□□□□ -0.75
USP48-202ENST00000374730 VPS9D1Q9Y2B5 631 aa10.36□□□□□ -0.75
USP48-202ENST00000374730 HAP1P54257 671 aaPredicted RBP10.34□□□□□ -0.75
USP48-202ENST00000374730 NBR1Q14596 966 aa10.34□□□□□ -0.75
USP48-202ENST00000374730 EN1Q05925 392 aaPredicted RBP10.33□□□□□ -0.76
USP48-202ENST00000374730 C6orf132Q5T0Z8 1188 aa10.32□□□□□ -0.76
USP48-202ENST00000374730 COL9A1P20849 921 aa10.3□□□□□ -0.76
USP48-202ENST00000374730 GRXCR2A6NFK2 248 aa10.29□□□□□ -0.76
USP48-202ENST00000374730 BHMG1C9JSJ3 638 aaPredicted RBP10.29□□□□□ -0.76
USP48-202ENST00000374730 MAP3K7O43318 606 aa10.29□□□□□ -0.76
USP48-202ENST00000374730 RBM33Q96EV2 1170 aaKnown RBP10.29□□□□□ -0.76
USP48-202ENST00000374730 STAC3Q96MF2 364 aa10.28□□□□□ -0.76
USP48-202ENST00000374730 ONECUT3O60422 494 aaPredicted RBP10.27□□□□□ -0.77
USP48-202ENST00000374730 NBPF3Q9H094 633 aa10.27□□□□□ -0.77
USP48-202ENST00000374730 OSBPP22059 807 aa10.26□□□□□ -0.77
USP48-202ENST00000374730 RABGEF1Q9UJ41 708 aa10.26□□□□□ -0.77
USP48-202ENST00000374730 TSR1Q2NL82 804 aaKnown RBP10.25□□□□□ -0.77
USP48-202ENST00000374730 PROX2Q3B8N5 592 aa10.25□□□□□ -0.77
USP48-202ENST00000374730 PRIM1P49642 420 aaKnown RBP10.24□□□□□ -0.77
USP48-202ENST00000374730 CERKQ8TCT0 537 aa10.24□□□□□ -0.77
USP48-202ENST00000374730 MRPL50Q8N5N7 158 aaKnown RBP10.23□□□□□ -0.77
USP48-202ENST00000374730 TRIM6-TRIM34B2RNG4 842 aa10.22□□□□□ -0.77
USP48-202ENST00000374730 VSIG10Q8N0Z9 540 aa10.21□□□□□ -0.77
USP48-202ENST00000374730 MLLT3P42568 568 aaPredicted RBP10.2□□□□□ -0.78
USP48-202ENST00000374730 LAPTM4BQ86VI4 370 aa10.2□□□□□ -0.78
USP48-202ENST00000374730 HCSTQ9UBK5 93 aa10.2□□□□□ -0.78
USP48-202ENST00000374730 KDM2AQ9Y2K7 1162 aa10.2□□□□□ -0.78
USP48-202ENST00000374730 KCTD12Q96CX2 325 aaKnown RBP10.19□□□□□ -0.78
USP48-202ENST00000374730 KIAA1468Q9P260 1216 aa10.19□□□□□ -0.78
USP48-202ENST00000374730 RBM27Q9P2N5 1060 aaKnown RBP10.18□□□□□ -0.78
USP48-202ENST00000374730 GOLGA8CPA6NN73 597 aa10.17□□□□□ -0.78
USP48-202ENST00000374730 CDHR5Q9HBB8 845 aa10.17□□□□□ -0.78
USP48-202ENST00000374730 PRSS12P56730 875 aa10.16□□□□□ -0.78
USP48-202ENST00000374730 TSKSQ9UJT2 592 aa10.16□□□□□ -0.78
USP48-202ENST00000374730 SEMA3EO15041 775 aa10.15□□□□□ -0.78
USP48-202ENST00000374730 PACS2Q86VP3 889 aa10.15□□□□□ -0.78
USP48-202ENST00000374730 WNT2BQ93097 391 aa10.15□□□□□ -0.78
USP48-202ENST00000374730 CDCA7LQ96GN5 454 aa10.15□□□□□ -0.78
USP48-202ENST00000374730 THSD4Q6ZMP0 1018 aa10.14□□□□□ -0.79
USP48-202ENST00000374730 FAM98CQ17RN3 349 aaKnown RBP10.13□□□□□ -0.79
USP48-202ENST00000374730 NISCHQ9Y2I1 1504 aa10.12□□□□□ -0.79
USP48-202ENST00000374730 TESPA1A2RU30 521 aaPredicted RBP10.12□□□□□ -0.79
USP48-202ENST00000374730 ANKK1Q8NFD2 765 aa10.12□□□□□ -0.79
USP48-202ENST00000374730 NPDC1Q9NQX5 325 aaPredicted RBP10.12□□□□□ -0.79
USP48-202ENST00000374730 NBPF26B4DH59 902 aa10.11□□□□□ -0.79
USP48-202ENST00000374730 ZFRQ96KR1 1074 aaKnown RBP10.11□□□□□ -0.79
USP48-202ENST00000374730 SEPT9Q9UHD8 586 aaPredicted RBP10.11□□□□□ -0.79
USP48-202ENST00000374730 FAM198AQ9UFP1 575 aa10.1□□□□□ -0.79
USP48-202ENST00000374730 SMYD5Q6GMV2 418 aa10.09□□□□□ -0.79
USP48-202ENST00000374730 TTC13Q8NBP0 860 aa10.09□□□□□ -0.79
USP48-202ENST00000374730 SOWAHBA6NEL2 793 aa10.07□□□□□ -0.8
USP48-202ENST00000374730 PTGDRQ13258 359 aa10.07□□□□□ -0.8
USP48-202ENST00000374730 PADI6Q6TGC4 694 aa10.07□□□□□ -0.8
USP48-202ENST00000374730 PTPN5P54829 565 aa10.06□□□□□ -0.8
USP48-202ENST00000374730 TATDN2Q93075 761 aa10.06□□□□□ -0.8
USP48-202ENST00000374730 PNMA3Q9UL41 463 aa10.05□□□□□ -0.8
USP48-202ENST00000374730 NUTM2FA1L443 756 aa10.04□□□□□ -0.8
USP48-202ENST00000374730 BCAMP50895 628 aa10.03□□□□□ -0.8
USP48-202ENST00000374730 LRCH3Q96II8 777 aa10.03□□□□□ -0.8
USP48-202ENST00000374730 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.03□□□□□ -0.8
USP48-202ENST00000374730 C3orf80F5H4A9 247 aa10.02□□□□□ -0.81
USP48-202ENST00000374730 SMAPO00193 183 aa10.02□□□□□ -0.81
USP48-202ENST00000374730 FCHSD2O94868 740 aa10.02□□□□□ -0.81
USP48-202ENST00000374730 NYAP1Q6ZVC0 841 aa10.02□□□□□ -0.81
USP48-202ENST00000374730 NUDT18Q6ZVK8 323 aa10.02□□□□□ -0.81
USP48-202ENST00000374730 PLA2G2EQ9NZK7 142 aa10□□□□□ -0.81
USP48-202ENST00000374730 RBM26Q5T8P6 1007 aaKnown RBP9.99□□□□□ -0.81
USP48-202ENST00000374730 TSR3Q9UJK0 312 aaKnown RBP9.99□□□□□ -0.81
USP48-202ENST00000374730 HIC1Q14526 733 aa9.98□□□□□ -0.81
USP48-202ENST00000374730 SAMD7Q7Z3H4 446 aa9.98□□□□□ -0.81
USP48-202ENST00000374730 EYA1Q99502 592 aa9.97□□□□□ -0.81
USP48-202ENST00000374730 HPS5Q9UPZ3 1129 aa9.97□□□□□ -0.81
USP48-202ENST00000374730 WBP1LQ9NX94 342 aa9.96□□□□□ -0.82
USP48-202ENST00000374730 TULP1O00294 542 aaPredicted RBP9.95□□□□□ -0.82
USP48-202ENST00000374730 GPR37O15354 613 aa9.95□□□□□ -0.82
USP48-202ENST00000374730 HDGFP51858 240 aaKnown RBP9.95□□□□□ -0.82
USP48-202ENST00000374730 IFFO2Q5TF58 517 aa9.95□□□□□ -0.82
USP48-202ENST00000374730 ADGRG1Q9Y653 693 aa9.95□□□□□ -0.82
USP48-202ENST00000374730 RBM46Q8TBY0 533 aaKnown RBP9.94□□□□□ -0.82
USP48-202ENST00000374730 NECTIN2Q92692 538 aa9.93□□□□□ -0.82
USP48-202ENST00000374730 GNPATO15228 680 aa9.92□□□□□ -0.82
USP48-202ENST00000374730 PPP4CP60510 307 aa9.92□□□□□ -0.82
USP48-202ENST00000374730 GPIHBP1Q8IV16 184 aa9.92□□□□□ -0.82
USP48-202ENST00000374730 ITGBL1O95965 494 aaPredicted RBP9.91□□□□□ -0.82
USP48-202ENST00000374730 DNAJB2P25686 324 aa9.91□□□□□ -0.82
USP48-202ENST00000374730 SLF2Q8IX21 1173 aa9.91□□□□□ -0.82
USP48-202ENST00000374730 SLC4A3P48751 1232 aa9.9□□□□□ -0.82
USP48-202ENST00000374730 SWT1Q5T5J6 900 aaKnown RBP9.9□□□□□ -0.82
USP48-202ENST00000374730 OATP04181 439 aa9.89□□□□□ -0.83
USP48-202ENST00000374730 TMEM134Q9H6X4 195 aa9.88□□□□□ -0.83
USP48-202ENST00000374730 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.87□□□□□ -0.83
USP48-202ENST00000374730 RCCD1A6NED2 376 aa9.87□□□□□ -0.83
USP48-202ENST00000374730 RNF40O75150 1001 aa9.87□□□□□ -0.83
USP48-202ENST00000374730 PXYLP1Q8TE99 480 aa9.87□□□□□ -0.83
USP48-202ENST00000374730 FAM161AQ3B820 660 aa9.86□□□□□ -0.83
USP48-202ENST00000374730 FECHP22830 423 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms