RNA–Protein interactions for RNA: ENST00000368213.9

PTPRK-205, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,816 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-205ENST00000368213 TOPBP1Q92547 1522 aa13.7□□□□□ -0.22
PTPRK-205ENST00000368213 APBB1O00213 710 aa13.7□□□□□ -0.22
PTPRK-205ENST00000368213 ZNF644Q9H582 1327 aaPredicted RBP13.7□□□□□ -0.22
PTPRK-205ENST00000368213 RGS3P49796 1198 aa13.69□□□□□ -0.22
PTPRK-205ENST00000368213 TPRNQ4KMQ1 711 aa13.69□□□□□ -0.22
PTPRK-205ENST00000368213 FRAT2O75474 233 aaPredicted RBP13.69□□□□□ -0.22
PTPRK-205ENST00000368213 TTC5Q8N0Z6 440 aa13.69□□□□□ -0.22
PTPRK-205ENST00000368213 HDAC5Q9UQL6 1122 aa13.69□□□□□ -0.22
PTPRK-205ENST00000368213 PIP4K2BP78356 416 aa13.68□□□□□ -0.22
PTPRK-205ENST00000368213 TEFQ10587 303 aa13.67□□□□□ -0.22
PTPRK-205ENST00000368213 SUPT16HQ9Y5B9 1047 aaKnown RBP13.67□□□□□ -0.22
PTPRK-205ENST00000368213 DHX57Q6P158 1386 aaKnown RBP13.67□□□□□ -0.22
PTPRK-205ENST00000368213 SF3B2Q13435 895 aaKnown RBP13.67□□□□□ -0.22
PTPRK-205ENST00000368213 CGNL1Q0VF96 1302 aa13.67□□□□□ -0.22
PTPRK-205ENST00000368213 GOLGA6L22H0YM25 854 aa13.66□□□□□ -0.22
PTPRK-205ENST00000368213 RAPGEF3O95398 923 aa13.66□□□□□ -0.22
PTPRK-205ENST00000368213 NUTM2BA6NNL0 878 aaPredicted RBP13.65□□□□□ -0.22
PTPRK-205ENST00000368213 NUTM2EB1AL46 878 aaPredicted RBP13.65□□□□□ -0.22
PTPRK-205ENST00000368213 SLC4A10Q6U841 1118 aa13.65□□□□□ -0.22
PTPRK-205ENST00000368213 NUTM2AQ8IVF1 878 aaPredicted RBP13.65□□□□□ -0.22
PTPRK-205ENST00000368213 ESCO1Q5FWF5 840 aa13.65□□□□□ -0.22
PTPRK-205ENST00000368213 ANKLE2Q86XL3 938 aa13.65□□□□□ -0.22
PTPRK-205ENST00000368213 POLA1P09884 1462 aaPredicted RBP13.64□□□□□ -0.23
PTPRK-205ENST00000368213 ST20-MTHFSA0A0A6YYL1 179 aa13.63□□□□□ -0.23
PTPRK-205ENST00000368213 ITPRIPQ8IWB1 547 aa13.63□□□□□ -0.23
PTPRK-205ENST00000368213 GPRASP1Q5JY77 1395 aa13.63□□□□□ -0.23
PTPRK-205ENST00000368213 CLSTN1O94985 981 aa13.63□□□□□ -0.23
PTPRK-205ENST00000368213 RAPGEF4Q8WZA2 1011 aa13.63□□□□□ -0.23
PTPRK-205ENST00000368213 NUTM2GQ5VZR2 741 aa13.63□□□□□ -0.23
PTPRK-205ENST00000368213 CCDC146Q8IYE0 955 aa13.63□□□□□ -0.23
PTPRK-205ENST00000368213 NLRP2Q9NX02 1062 aa13.63□□□□□ -0.23
PTPRK-205ENST00000368213 DDRGK1Q96HY6 314 aa13.62□□□□□ -0.23
PTPRK-205ENST00000368213 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.62□□□□□ -0.23
PTPRK-205ENST00000368213 MCCP23508 829 aa13.62□□□□□ -0.23
PTPRK-205ENST00000368213 SCAPERQ9BY12 1400 aa13.62□□□□□ -0.23
PTPRK-205ENST00000368213 CUX1P39880 1505 aa13.62□□□□□ -0.23
PTPRK-205ENST00000368213 NGEFQ8N5V2 710 aa13.61□□□□□ -0.23
PTPRK-205ENST00000368213 USP35Q9P2H5 1018 aa13.61□□□□□ -0.23
PTPRK-205ENST00000368213 PANK3Q9H999 370 aa13.6□□□□□ -0.23
PTPRK-205ENST00000368213 SMC4Q9NTJ3 1288 aa13.6□□□□□ -0.23
PTPRK-205ENST00000368213 KIAA1211Q6ZU35 1233 aa13.6□□□□□ -0.23
PTPRK-205ENST00000368213 GPATCH3Q96I76 525 aa13.59□□□□□ -0.23
PTPRK-205ENST00000368213 LAMC3Q9Y6N6 1575 aa13.59□□□□□ -0.23
PTPRK-205ENST00000368213 CENPJQ9HC77 1338 aaPredicted RBP13.59□□□□□ -0.23
PTPRK-205ENST00000368213 DNMBPQ6XZF7 1577 aa13.59□□□□□ -0.23
PTPRK-205ENST00000368213 NLRP6P59044 892 aa13.58□□□□□ -0.24
PTPRK-205ENST00000368213 ANKRD50Q9ULJ7 1429 aa13.58□□□□□ -0.24
PTPRK-205ENST00000368213 TMEM132EQ6IEE7 984 aa13.57□□□□□ -0.24
PTPRK-205ENST00000368213 STRN4Q9NRL3 753 aa13.57□□□□□ -0.24
PTPRK-205ENST00000368213 PLEKHH2Q8IVE3 1493 aa13.57□□□□□ -0.24
PTPRK-205ENST00000368213 GNL2Q13823 731 aaKnown RBP13.57□□□□□ -0.24
PTPRK-205ENST00000368213 CASKIN1Q8WXD9 1431 aa13.56□□□□□ -0.24
PTPRK-205ENST00000368213 HMMRO75330 724 aa13.56□□□□□ -0.24
PTPRK-205ENST00000368213 FGD6Q6ZV73 1430 aa13.56□□□□□ -0.24
PTPRK-205ENST00000368213 ABTB2Q8N961 1025 aa13.56□□□□□ -0.24
PTPRK-205ENST00000368213 STAC3Q96MF2 364 aa13.56□□□□□ -0.24
PTPRK-205ENST00000368213 NLRP13Q86W25 1043 aa13.55□□□□□ -0.24
PTPRK-205ENST00000368213 EIF2S2P20042 333 aaKnown RBP13.55□□□□□ -0.24
PTPRK-205ENST00000368213 FYCO1Q9BQS8 1478 aa13.55□□□□□ -0.24
PTPRK-205ENST00000368213 HSP90AB1P08238 724 aaKnown RBP13.55□□□□□ -0.24
PTPRK-205ENST00000368213 CFAP44Q96MT7 982 aa13.55□□□□□ -0.24
PTPRK-205ENST00000368213 RRP7AQ9Y3A4 280 aaKnown RBP13.55□□□□□ -0.24
PTPRK-205ENST00000368213 NEXNQ0ZGT2 675 aa13.54□□□□□ -0.24
PTPRK-205ENST00000368213 MIA2Q96PC5 1412 aa13.54□□□□□ -0.24
PTPRK-205ENST00000368213 NCOA2Q15596 1464 aa13.54□□□□□ -0.24
PTPRK-205ENST00000368213 CCER2I3L3R5 266 aa13.53□□□□□ -0.24
PTPRK-205ENST00000368213 DIAPH1O60610 1272 aaKnown RBP13.53□□□□□ -0.24
PTPRK-205ENST00000368213 CABP2Q9NPB3 220 aa13.53□□□□□ -0.24
PTPRK-205ENST00000368213 CD109Q6YHK3 1445 aa13.53□□□□□ -0.24
PTPRK-205ENST00000368213 SLC26A8Q96RN1 970 aa13.53□□□□□ -0.24
PTPRK-205ENST00000368213 FBXW7Q969H0 707 aa13.52□□□□□ -0.24
PTPRK-205ENST00000368213 ELL2O00472 640 aaPredicted RBP13.52□□□□□ -0.24
PTPRK-205ENST00000368213 NBR1Q14596 966 aa13.52□□□□□ -0.24
PTPRK-205ENST00000368213 PMFBP1Q8TBY8 1022 aa13.52□□□□□ -0.24
PTPRK-205ENST00000368213 B4GALNT3Q6L9W6 998 aa13.52□□□□□ -0.25
PTPRK-205ENST00000368213 PPP1R1BQ9UD71 204 aaPredicted RBP13.52□□□□□ -0.25
PTPRK-205ENST00000368213 TOMM22Q9NS69 142 aa13.51□□□□□ -0.25
PTPRK-205ENST00000368213 SLC52A1Q9NWF4 448 aa13.51□□□□□ -0.25
PTPRK-205ENST00000368213 GOLGA6L4A6NEF3 574 aa13.51□□□□□ -0.25
PTPRK-205ENST00000368213 USP47Q96K76 1375 aa13.5□□□□□ -0.25
PTPRK-205ENST00000368213 RWDD1Q9H446 243 aaPredicted RBP13.5□□□□□ -0.25
PTPRK-205ENST00000368213 PPP4R2Q9NY27 417 aa13.5□□□□□ -0.25
PTPRK-205ENST00000368213 PHLDB1Q86UU1 1377 aa13.5□□□□□ -0.25
PTPRK-205ENST00000368213 TRIM34Q9BYJ4 488 aa13.5□□□□□ -0.25
PTPRK-205ENST00000368213 KIAA0586Q9BVV6 1533 aa13.5□□□□□ -0.25
PTPRK-205ENST00000368213 NOL10Q9BSC4 688 aaKnown RBP13.49□□□□□ -0.25
PTPRK-205ENST00000368213 TRIM6-TRIM34B2RNG4 842 aa13.49□□□□□ -0.25
PTPRK-205ENST00000368213 RRBP1Q9P2E9 1410 aaKnown RBP13.49□□□□□ -0.25
PTPRK-205ENST00000368213 CLUAP1Q96AJ1 413 aa13.49□□□□□ -0.25
PTPRK-205ENST00000368213 WASHC2AQ641Q2 1341 aa13.48□□□□□ -0.25
PTPRK-205ENST00000368213 TROQ12816 1431 aaPredicted RBP13.48□□□□□ -0.25
PTPRK-205ENST00000368213 SYNJ1O43426 1573 aa13.48□□□□□ -0.25
PTPRK-205ENST00000368213 PRAM1Q96QH2 718 aa13.48□□□□□ -0.25
PTPRK-205ENST00000368213 RCAN3Q9UKA8 241 aa13.48□□□□□ -0.25
PTPRK-205ENST00000368213 NECTIN2Q92692 538 aa13.48□□□□□ -0.25
PTPRK-205ENST00000368213 DMRT2Q9Y5R5 561 aa13.48□□□□□ -0.25
PTPRK-205ENST00000368213 DDX58O95786 925 aaKnown RBP13.47□□□□□ -0.25
PTPRK-205ENST00000368213 LRRC9Q6ZRR7 1453 aa13.47□□□□□ -0.25
PTPRK-205ENST00000368213 NCBP3Q53F19 620 aaKnown RBP13.47□□□□□ -0.25
PTPRK-205ENST00000368213 VPS37DQ86XT2 251 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms