RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 SYCP2Q9BX26 1530 aa19.4■□□□□ 0.7
CD48-201ENST00000368045 ARHGAP5Q13017 1502 aa19.39■□□□□ 0.69
CD48-201ENST00000368045 PRAG1Q86YV5 1406 aa19.39■□□□□ 0.69
CD48-201ENST00000368045 BRD4O60885 1362 aaPredicted RBP19.39■□□□□ 0.69
CD48-201ENST00000368045 RALBP1Q15311 655 aa19.39■□□□□ 0.69
CD48-201ENST00000368045 POLR3GLQ9BT43 218 aa19.39■□□□□ 0.69
CD48-201ENST00000368045 ST20-MTHFSA0A0A6YYL1 179 aa19.38■□□□□ 0.69
CD48-201ENST00000368045 NUDCQ9Y266 331 aa19.38■□□□□ 0.69
CD48-201ENST00000368045 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.38■□□□□ 0.69
CD48-201ENST00000368045 ABCC2Q92887 1545 aa19.38■□□□□ 0.69
CD48-201ENST00000368045 GPRASP1Q5JY77 1395 aa19.38■□□□□ 0.69
CD48-201ENST00000368045 TTC37Q6PGP7 1564 aa19.38■□□□□ 0.69
CD48-201ENST00000368045 FANCIQ9NVI1 1328 aa19.37■□□□□ 0.69
CD48-201ENST00000368045 PNISRQ8TF01 805 aaKnown RBP19.37■□□□□ 0.69
CD48-201ENST00000368045 LAMC1P11047 1609 aa19.37■□□□□ 0.69
CD48-201ENST00000368045 E9PCH4 1651 aa19.36■□□□□ 0.69
CD48-201ENST00000368045 RNF123Q5XPI4 1314 aa19.36■□□□□ 0.69
CD48-201ENST00000368045 KDM2AQ9Y2K7 1162 aa19.36■□□□□ 0.69
CD48-201ENST00000368045 TRPM1Q7Z4N2 1603 aa19.35■□□□□ 0.69
CD48-201ENST00000368045 IQGAP3Q86VI3 1631 aa19.35■□□□□ 0.69
CD48-201ENST00000368045 MYBBP1AQ9BQG0 1328 aaKnown RBP19.35■□□□□ 0.69
CD48-201ENST00000368045 CHD1O14646 1710 aa19.35■□□□□ 0.69
CD48-201ENST00000368045 TMC1Q8TDI8 760 aa19.35■□□□□ 0.69
CD48-201ENST00000368045 LRPPRCP42704 1394 aaKnown RBP19.35■□□□□ 0.69
CD48-201ENST00000368045 ATP10AO60312 1499 aa19.35■□□□□ 0.69
CD48-201ENST00000368045 DUOX2Q9NRD8 1548 aa19.34■□□□□ 0.69
CD48-201ENST00000368045 PLA2R1Q13018 1463 aa19.34■□□□□ 0.69
CD48-201ENST00000368045 MAGI2Q86UL8 1455 aa19.34■□□□□ 0.69
CD48-201ENST00000368045 ERBINQ96RT1 1412 aa19.33■□□□□ 0.69
CD48-201ENST00000368045 MYO5CQ9NQX4 1742 aa19.33■□□□□ 0.68
CD48-201ENST00000368045 EIF2AK4Q9P2K8 1649 aaKnown RBP19.31■□□□□ 0.68
CD48-201ENST00000368045 A2MP01023 1474 aa19.3■□□□□ 0.68
CD48-201ENST00000368045 UHRF1BP1LA0JNW5 1464 aa19.29■□□□□ 0.68
CD48-201ENST00000368045 WASHC2CQ9Y4E1 1318 aa19.28■□□□□ 0.68
CD48-201ENST00000368045 PLCH2O75038 1416 aa19.28■□□□□ 0.68
CD48-201ENST00000368045 PRDM15P57071 1507 aaPredicted RBP19.28■□□□□ 0.68
CD48-201ENST00000368045 PARD3Q8TEW0 1356 aa19.27■□□□□ 0.68
CD48-201ENST00000368045 COL17A1Q9UMD9 1497 aaPredicted RBP19.27■□□□□ 0.67
CD48-201ENST00000368045 INSRP06213 1382 aa19.26■□□□□ 0.67
CD48-201ENST00000368045 NLRP13Q86W25 1043 aa19.25■□□□□ 0.67
CD48-201ENST00000368045 EFCAB2Q5VUJ9 269 aa19.24■□□□□ 0.67
CD48-201ENST00000368045 B4GALNT3Q6L9W6 998 aa19.24■□□□□ 0.67
CD48-201ENST00000368045 ZMYM4Q5VZL5 1548 aa19.23■□□□□ 0.67
CD48-201ENST00000368045 ABCC1P33527 1531 aa19.22■□□□□ 0.67
CD48-201ENST00000368045 CNGB1Q14028 1251 aaPredicted RBP19.21■□□□□ 0.67
CD48-201ENST00000368045 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.21■□□□□ 0.67
CD48-201ENST00000368045 ERCC6L2Q5T890 1561 aa19.21■□□□□ 0.67
CD48-201ENST00000368045 ARAP3Q8WWN8 1544 aa19.21■□□□□ 0.67
CD48-201ENST00000368045 NBPF1Q3BBV0 1214 aa19.2■□□□□ 0.66
CD48-201ENST00000368045 RGL3Q3MIN7 710 aa19.2■□□□□ 0.66
CD48-201ENST00000368045 RTEL1-TNFRSF6BF6WH68 1400 aa19.2■□□□□ 0.66
CD48-201ENST00000368045 PER1O15534 1290 aaPredicted RBP19.19■□□□□ 0.66
CD48-201ENST00000368045 PDE3BQ13370 1112 aa19.19■□□□□ 0.66
CD48-201ENST00000368045 TESK2Q96S53 571 aa19.19■□□□□ 0.66
CD48-201ENST00000368045 STAC3Q96MF2 364 aa19.19■□□□□ 0.66
CD48-201ENST00000368045 ZCCHC11Q5TAX3 1644 aaKnown RBP19.18■□□□□ 0.66
CD48-201ENST00000368045 CLASP1Q7Z460 1538 aa19.18■□□□□ 0.66
CD48-201ENST00000368045 RNF17Q9BXT8 1623 aaKnown RBP19.18■□□□□ 0.66
CD48-201ENST00000368045 MSH5O43196 834 aa19.17■□□□□ 0.66
CD48-201ENST00000368045 TMF1P82094 1093 aa19.16■□□□□ 0.66
CD48-201ENST00000368045 DISP3Q9P2K9 1392 aa19.15■□□□□ 0.66
CD48-201ENST00000368045 CCDC136Q96JN2 1154 aa19.14■□□□□ 0.65
CD48-201ENST00000368045 TRAPPC8Q9Y2L5 1435 aa19.13■□□□□ 0.65
CD48-201ENST00000368045 TRPM2O94759 1503 aa19.12■□□□□ 0.65
CD48-201ENST00000368045 SPAG9O60271 1321 aaKnown RBP19.11■□□□□ 0.65
CD48-201ENST00000368045 PTPRTO14522 1441 aa19.11■□□□□ 0.65
CD48-201ENST00000368045 BLMP54132 1417 aaPredicted RBP19.1■□□□□ 0.65
CD48-201ENST00000368045 RRP1P56182 461 aaKnown RBP19.09■□□□□ 0.65
CD48-201ENST00000368045 ERICH6Q7L0X2 663 aa19.09■□□□□ 0.65
CD48-201ENST00000368045 ZFYVE16Q7Z3T8 1539 aa19.09■□□□□ 0.65
CD48-201ENST00000368045 SCAPERQ9BY12 1400 aa19.09■□□□□ 0.65
CD48-201ENST00000368045 MADDQ8WXG6 1647 aa19.08■□□□□ 0.65
CD48-201ENST00000368045 PANK3Q9H999 370 aa19.08■□□□□ 0.64
CD48-201ENST00000368045 DEPDC5O75140 1603 aa19.07■□□□□ 0.64
CD48-201ENST00000368045 RCAN3Q9UKA8 241 aa19.07■□□□□ 0.64
CD48-201ENST00000368045 NEURL4Q96JN8 1562 aa19.07■□□□□ 0.64
CD48-201ENST00000368045 CDCA8Q53HL2 280 aa19.06■□□□□ 0.64
CD48-201ENST00000368045 IQGAP1P46940 1657 aa19.06■□□□□ 0.64
CD48-201ENST00000368045 SCAF11Q99590 1463 aaKnown RBP19.04■□□□□ 0.64
CD48-201ENST00000368045 SPHKAPQ2M3C7 1700 aa19.04■□□□□ 0.64
CD48-201ENST00000368045 TET3O43151 1660 aa19.04■□□□□ 0.64
CD48-201ENST00000368045 KANK1Q14678 1352 aa19.04■□□□□ 0.64
CD48-201ENST00000368045 AEBP2Q6ZN18 517 aaPredicted RBP19.04■□□□□ 0.64
CD48-201ENST00000368045 VWDEQ8N2E2 1590 aa19.03■□□□□ 0.64
CD48-201ENST00000368045 WDR7Q9Y4E6 1490 aa19.03■□□□□ 0.64
CD48-201ENST00000368045 CEP152O94986 1710 aa19.03■□□□□ 0.64
CD48-201ENST00000368045 INO80Q9ULG1 1556 aaPredicted RBP19.01■□□□□ 0.63
CD48-201ENST00000368045 CC2D1BQ5T0F9 858 aaKnown RBP19.01■□□□□ 0.63
CD48-201ENST00000368045 SYNMO15061 1565 aa19■□□□□ 0.63
CD48-201ENST00000368045 SLC24A1O60721 1099 aa19■□□□□ 0.63
CD48-201ENST00000368045 ABCA9Q8IUA7 1624 aa19■□□□□ 0.63
CD48-201ENST00000368045 EIF3AQ14152 1382 aaKnown RBP19■□□□□ 0.63
CD48-201ENST00000368045 ATP7AQ04656 1500 aa19■□□□□ 0.63
CD48-201ENST00000368045 CLTCL1P53675 1640 aa18.99■□□□□ 0.63
CD48-201ENST00000368045 NPC1L1Q9UHC9 1359 aa18.99■□□□□ 0.63
CD48-201ENST00000368045 KIAA1210Q9ULL0 1709 aa18.99■□□□□ 0.63
CD48-201ENST00000368045 AFAP1Q8N556 730 aa18.98■□□□□ 0.63
CD48-201ENST00000368045 MYT1LQ9UL68 1186 aa18.98■□□□□ 0.63
CD48-201ENST00000368045 KNSTRNQ9Y448 316 aa18.98■□□□□ 0.63
CD48-201ENST00000368045 FANCAO15360 1455 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 115 ms