RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NOL8Q76FK4 1167 aaKnown RBP24.36■■□□□ 1.49
CCDC88B-202ENST00000356786 NFKBIBQ15653 356 aa24.35■■□□□ 1.49
CCDC88B-202ENST00000356786 ST20-MTHFSA0A0A6YYL1 179 aa24.35■■□□□ 1.49
CCDC88B-202ENST00000356786 FOXD4L5Q5VV16 416 aaPredicted RBP24.34■■□□□ 1.49
CCDC88B-202ENST00000356786 FOXD4L4Q8WXT5 416 aaPredicted RBP24.34■■□□□ 1.49
CCDC88B-202ENST00000356786 HMGXB3Q12766 1538 aa24.34■■□□□ 1.49
CCDC88B-202ENST00000356786 SKOR2Q2VWA4 1001 aaPredicted RBP24.34■■□□□ 1.49
CCDC88B-202ENST00000356786 CCDC18Q5T9S5 1454 aa24.33■■□□□ 1.49
CCDC88B-202ENST00000356786 ST18O60284 1047 aa24.33■■□□□ 1.48
CCDC88B-202ENST00000356786 HTATSF1O43719 755 aaKnown RBP24.32■■□□□ 1.48
CCDC88B-202ENST00000356786 RTF1Q92541 710 aaKnown RBP24.32■■□□□ 1.48
CCDC88B-202ENST00000356786 KIF21BO75037 1637 aa24.31■■□□□ 1.48
CCDC88B-202ENST00000356786 PHF14O94880 888 aa24.31■■□□□ 1.48
CCDC88B-202ENST00000356786 BCL2L13Q9BXK5 485 aa24.31■■□□□ 1.48
CCDC88B-202ENST00000356786 ANO8Q9HCE9 1232 aaPredicted RBP24.3■■□□□ 1.48
CCDC88B-202ENST00000356786 COG6Q9Y2V7 657 aa24.3■■□□□ 1.48
CCDC88B-202ENST00000356786 TRIM6-TRIM34B2RNG4 842 aa24.29■■□□□ 1.48
CCDC88B-202ENST00000356786 LMOD2Q6P5Q4 547 aa24.29■■□□□ 1.48
CCDC88B-202ENST00000356786 ANKRD30AQ9BXX3 1397 aa24.29■■□□□ 1.48
CCDC88B-202ENST00000356786 NESP48681 1621 aa24.28■■□□□ 1.48
CCDC88B-202ENST00000356786 FAM13BQ9NYF5 915 aa24.28■■□□□ 1.48
CCDC88B-202ENST00000356786 KANK1Q14678 1352 aa24.28■■□□□ 1.48
CCDC88B-202ENST00000356786 CGNL1Q0VF96 1302 aa24.28■■□□□ 1.48
CCDC88B-202ENST00000356786 EFCAB2Q5VUJ9 269 aa24.28■■□□□ 1.48
CCDC88B-202ENST00000356786 GNL2Q13823 731 aaKnown RBP24.27■■□□□ 1.48
CCDC88B-202ENST00000356786 CC2D2AQ9P2K1 1620 aa24.27■■□□□ 1.48
CCDC88B-202ENST00000356786 STK26Q9P289 416 aa24.27■■□□□ 1.48
CCDC88B-202ENST00000356786 RRP7AQ9Y3A4 280 aaKnown RBP24.27■■□□□ 1.47
CCDC88B-202ENST00000356786 IL27Q8NEV9 243 aa24.26■■□□□ 1.47
CCDC88B-202ENST00000356786 PANK3Q9H999 370 aa24.26■■□□□ 1.47
CCDC88B-202ENST00000356786 HDGFL2Q7Z4V5 671 aaPredicted RBP24.25■■□□□ 1.47
CCDC88B-202ENST00000356786 CHMP5Q9NZZ3 219 aa24.25■■□□□ 1.47
CCDC88B-202ENST00000356786 HMMRO75330 724 aa24.25■■□□□ 1.47
CCDC88B-202ENST00000356786 HNRNPMP52272 730 aaKnown RBP eCLIP24.25■■□□□ 1.47
CCDC88B-202ENST00000356786 CSPP1Q1MSJ5 1256 aa24.25■■□□□ 1.47
CCDC88B-202ENST00000356786 AQRO60306 1485 aaKnown RBP eCLIP24.24■■□□□ 1.47
CCDC88B-202ENST00000356786 BRPF3Q9ULD4 1205 aa24.24■■□□□ 1.47
CCDC88B-202ENST00000356786 FAM43AQ8N2R8 423 aa24.23■■□□□ 1.47
CCDC88B-202ENST00000356786 TOP2BQ02880 1626 aa24.22■■□□□ 1.47
CCDC88B-202ENST00000356786 E9PSI1 815 aa24.21■■□□□ 1.47
CCDC88B-202ENST00000356786 PAK3O75914 559 aaPredicted RBP24.21■■□□□ 1.47
CCDC88B-202ENST00000356786 CUX1P39880 1505 aa24.21■■□□□ 1.47
CCDC88B-202ENST00000356786 ERICH3Q5RHP9 1530 aa24.2■■□□□ 1.47
CCDC88B-202ENST00000356786 FOXD4L6Q3SYB3 417 aaPredicted RBP24.2■■□□□ 1.46
CCDC88B-202ENST00000356786 FOXD4L3Q6VB84 417 aaPredicted RBP24.2■■□□□ 1.46
CCDC88B-202ENST00000356786 TPM4P67936 248 aa24.2■■□□□ 1.46
CCDC88B-202ENST00000356786 ANKRD45Q5TZF3 282 aa24.2■■□□□ 1.46
CCDC88B-202ENST00000356786 SLC4A10Q6U841 1118 aa24.17■■□□□ 1.46
CCDC88B-202ENST00000356786 ZKSCAN2Q63HK3 967 aa24.17■■□□□ 1.46
CCDC88B-202ENST00000356786 STK31Q9BXU1 1019 aa24.17■■□□□ 1.46
CCDC88B-202ENST00000356786 APAF1O14727 1248 aa24.17■■□□□ 1.46
CCDC88B-202ENST00000356786 GGT6Q6P531 493 aa24.16■■□□□ 1.46
CCDC88B-202ENST00000356786 PRXQ9BXM0 1461 aa24.15■■□□□ 1.46
CCDC88B-202ENST00000356786 ARAP1Q96P48 1450 aa24.15■■□□□ 1.46
CCDC88B-202ENST00000356786 USP47Q96K76 1375 aa24.15■■□□□ 1.46
CCDC88B-202ENST00000356786 PTPRGP23470 1445 aa24.15■■□□□ 1.46
CCDC88B-202ENST00000356786 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.14■■□□□ 1.45
CCDC88B-202ENST00000356786 EIF3AQ14152 1382 aaKnown RBP24.13■■□□□ 1.45
CCDC88B-202ENST00000356786 GOLGA6L1Q8N7Z2 621 aa24.13■■□□□ 1.45
CCDC88B-202ENST00000356786 KIF16BQ96L93 1317 aa24.12■■□□□ 1.45
CCDC88B-202ENST00000356786 RSPH4AQ5TD94 716 aa24.12■■□□□ 1.45
CCDC88B-202ENST00000356786 HSP90B1P14625 803 aaKnown RBP24.11■■□□□ 1.45
CCDC88B-202ENST00000356786 ZNF771Q7L3S4 317 aaPredicted RBP24.1■■□□□ 1.45
CCDC88B-202ENST00000356786 TOPBP1Q92547 1522 aa24.1■■□□□ 1.45
CCDC88B-202ENST00000356786 ELL2O00472 640 aaPredicted RBP24.09■■□□□ 1.45
CCDC88B-202ENST00000356786 FRAT2O75474 233 aaPredicted RBP24.09■■□□□ 1.45
CCDC88B-202ENST00000356786 MRE11P49959 708 aa24.09■■□□□ 1.45
CCDC88B-202ENST00000356786 LRRC9Q6ZRR7 1453 aa24.07■■□□□ 1.44
CCDC88B-202ENST00000356786 POLA1P09884 1462 aaPredicted RBP24.07■■□□□ 1.44
CCDC88B-202ENST00000356786 ATP6V1DQ9Y5K8 247 aa24.07■■□□□ 1.44
CCDC88B-202ENST00000356786 CCDC7Q96M83 1385 aa24.07■■□□□ 1.44
CCDC88B-202ENST00000356786 KIF7Q2M1P5 1343 aa24.06■■□□□ 1.44
CCDC88B-202ENST00000356786 GPATCH3Q96I76 525 aa24.06■■□□□ 1.44
CCDC88B-202ENST00000356786 TERF2IPQ9NYB0 399 aa24.05■■□□□ 1.44
CCDC88B-202ENST00000356786 SPAG9O60271 1321 aaKnown RBP24.05■■□□□ 1.44
CCDC88B-202ENST00000356786 MLECQ14165 292 aa24.05■■□□□ 1.44
CCDC88B-202ENST00000356786 GRIN2BQ13224 1484 aa24.04■■□□□ 1.44
CCDC88B-202ENST00000356786 RILPL2Q969X0 211 aa24.04■■□□□ 1.44
CCDC88B-202ENST00000356786 C22orf23Q9BZE7 217 aa24.04■■□□□ 1.44
CCDC88B-202ENST00000356786 FGD6Q6ZV73 1430 aa24.04■■□□□ 1.44
CCDC88B-202ENST00000356786 GOLGA6L19H0YKK7 550 aa24.04■■□□□ 1.44
CCDC88B-202ENST00000356786 KIF3BO15066 747 aa24.04■■□□□ 1.44
CCDC88B-202ENST00000356786 CASKIN1Q8WXD9 1431 aa24.03■■□□□ 1.44
CCDC88B-202ENST00000356786 ZNF592Q92610 1267 aa24.03■■□□□ 1.44
CCDC88B-202ENST00000356786 BECN2A8MW95 431 aa24.02■■□□□ 1.44
CCDC88B-202ENST00000356786 DDX19BQ9UMR2 479 aa24.02■■□□□ 1.44
CCDC88B-202ENST00000356786 LMOD3Q0VAK6 560 aa24.02■■□□□ 1.44
CCDC88B-202ENST00000356786 SF3A1Q15459 793 aaKnown RBP24.02■■□□□ 1.44
CCDC88B-202ENST00000356786 CCDC34Q96HJ3 373 aa24.02■■□□□ 1.44
CCDC88B-202ENST00000356786 R3HCC1Q9Y3T6 440 aaKnown RBP24.01■■□□□ 1.43
CCDC88B-202ENST00000356786 WASHC2AQ641Q2 1341 aa24■■□□□ 1.43
CCDC88B-202ENST00000356786 MYOM3Q5VTT5 1437 aa24■■□□□ 1.43
CCDC88B-202ENST00000356786 DZIP1LQ8IYY4 767 aaKnown RBP24■■□□□ 1.43
CCDC88B-202ENST00000356786 NOC3LQ8WTT2 800 aaKnown RBP24■■□□□ 1.43
CCDC88B-202ENST00000356786 TRAK2O60296 914 aa24■■□□□ 1.43
CCDC88B-202ENST00000356786 REC8O95072 547 aa23.99■■□□□ 1.43
CCDC88B-202ENST00000356786 CNTLNQ9NXG0 1405 aa23.99■■□□□ 1.43
CCDC88B-202ENST00000356786 NASPP49321 788 aaPredicted RBP23.99■■□□□ 1.43
CCDC88B-202ENST00000356786 CHMP4AQ9BY43 222 aa23.98■■□□□ 1.43
CCDC88B-202ENST00000356786 KIF3AQ9Y496 699 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms