RNA–Protein interactions for RNA: ENST00000356083.7

COL27A1-201, Transcript of collagen type XXVII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL27A1, Length 7,790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-201ENST00000356083 NOL10Q9BSC4 688 aaKnown RBP21.42■■□□□ 1.02
COL27A1-201ENST00000356083 CALRP27797 417 aaKnown RBP21.42■■□□□ 1.02
COL27A1-201ENST00000356083 AMPHP49418 695 aa21.42■■□□□ 1.02
COL27A1-201ENST00000356083 VPS37DQ86XT2 251 aa21.42■■□□□ 1.02
COL27A1-201ENST00000356083 ZFYVE27Q5T4F4 411 aa21.41■■□□□ 1.02
COL27A1-201ENST00000356083 CALD1Q05682 793 aaKnown RBP21.41■■□□□ 1.02
COL27A1-201ENST00000356083 ODF2Q5BJF6 829 aa21.41■■□□□ 1.02
COL27A1-201ENST00000356083 RILPL2Q969X0 211 aa21.41■■□□□ 1.02
COL27A1-201ENST00000356083 FAM184AQ8NB25 1140 aa21.4■■□□□ 1.02
COL27A1-201ENST00000356083 BCL11BQ9C0K0 894 aaPredicted RBP21.4■■□□□ 1.02
COL27A1-201ENST00000356083 CSPP1Q1MSJ5 1256 aa21.39■■□□□ 1.01
COL27A1-201ENST00000356083 PPP1R1BQ9UD71 204 aaPredicted RBP21.39■■□□□ 1.01
COL27A1-201ENST00000356083 APPP05067 770 aa21.39■■□□□ 1.01
COL27A1-201ENST00000356083 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.37■■□□□ 1.01
COL27A1-201ENST00000356083 EIF4G1Q04637 1599 aaKnown RBP21.37■■□□□ 1.01
COL27A1-201ENST00000356083 AMOTL1Q8IY63 956 aa21.37■■□□□ 1.01
COL27A1-201ENST00000356083 SMC4Q9NTJ3 1288 aa21.37■■□□□ 1.01
COL27A1-201ENST00000356083 ZNF592Q92610 1267 aa21.37■■□□□ 1.01
COL27A1-201ENST00000356083 GOLGA6L19H0YKK7 550 aa21.36■■□□□ 1.01
COL27A1-201ENST00000356083 CT47A1Q5JQC4 288 aaPredicted RBP21.35■■□□□ 1.01
COL27A1-201ENST00000356083 CLUAP1Q96AJ1 413 aa21.35■■□□□ 1.01
COL27A1-201ENST00000356083 SLC4A3P48751 1232 aa21.34■■□□□ 1.01
COL27A1-201ENST00000356083 TPM1P09493 284 aa21.34■■□□□ 1.01
COL27A1-201ENST00000356083 CCDC70Q6NSX1 233 aa21.34■■□□□ 1.01
COL27A1-201ENST00000356083 NAP1L1P55209 391 aaKnown RBP21.33■■□□□ 1.01
COL27A1-201ENST00000356083 R3HCC1Q9Y3T6 440 aaKnown RBP21.33■■□□□ 1.01
COL27A1-201ENST00000356083 MTMR7Q9Y216 660 aa21.32■■□□□ 1
COL27A1-201ENST00000356083 SYNE3Q6ZMZ3 975 aa21.32■■□□□ 1
COL27A1-201ENST00000356083 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.32■■□□□ 1
COL27A1-201ENST00000356083 CCAR1Q8IX12 1150 aaKnown RBP21.31■■□□□ 1
COL27A1-201ENST00000356083 CCDC146Q8IYE0 955 aa21.3■■□□□ 1
COL27A1-201ENST00000356083 FOSBP53539 338 aa21.3■■□□□ 1
COL27A1-201ENST00000356083 TMEM132AQ24JP5 1023 aa21.3■■□□□ 1
COL27A1-201ENST00000356083 FYB1O15117 783 aa21.29■■□□□ 1
COL27A1-201ENST00000356083 PHF14O94880 888 aa21.29■■□□□ 1
COL27A1-201ENST00000356083 NECTIN2Q92692 538 aa21.29■■□□□ 1
COL27A1-201ENST00000356083 RWDD1Q9H446 243 aaPredicted RBP21.28■■□□□ 1
COL27A1-201ENST00000356083 BECN2A8MW95 431 aa21.28■■□□□ 1
COL27A1-201ENST00000356083 HMMRO75330 724 aa21.27■■□□□ 1
COL27A1-201ENST00000356083 SKIDA1Q1XH10 827 aa21.27■■□□□ 1
COL27A1-201ENST00000356083 EID1Q9Y6B2 187 aa21.27■■□□□ 1
COL27A1-201ENST00000356083 CLIP1P30622 1438 aa21.26■□□□□ 0.99
COL27A1-201ENST00000356083 KIF3AQ9Y496 699 aa21.26■□□□□ 0.99
COL27A1-201ENST00000356083 GOLGA6L3A6NEY3 463 aa21.24■□□□□ 0.99
COL27A1-201ENST00000356083 TRIM29Q14134 588 aa21.24■□□□□ 0.99
COL27A1-201ENST00000356083 IKQ13123 557 aaPredicted RBP21.24■□□□□ 0.99
COL27A1-201ENST00000356083 CCDC180Q9P1Z9 1646 aa21.24■□□□□ 0.99
COL27A1-201ENST00000356083 C1orf141Q5JVX7 400 aa21.23■□□□□ 0.99
COL27A1-201ENST00000356083 KDM4AO75164 1064 aa21.23■□□□□ 0.99
COL27A1-201ENST00000356083 IPO7O95373 1038 aaKnown RBP21.23■□□□□ 0.99
COL27A1-201ENST00000356083 HSP90AB2PQ58FF8 381 aa21.22■□□□□ 0.99
COL27A1-201ENST00000356083 EPS15P42566 896 aa21.22■□□□□ 0.99
COL27A1-201ENST00000356083 PPM1FP49593 454 aaPredicted RBP21.22■□□□□ 0.99
COL27A1-201ENST00000356083 ST18O60284 1047 aa21.22■□□□□ 0.99
COL27A1-201ENST00000356083 IBSPP21815 317 aaPredicted RBP21.22■□□□□ 0.99
COL27A1-201ENST00000356083 ELL2O00472 640 aaPredicted RBP21.21■□□□□ 0.99
COL27A1-201ENST00000356083 HDAC5Q9UQL6 1122 aa21.21■□□□□ 0.99
COL27A1-201ENST00000356083 EIF2S2P20042 333 aaKnown RBP21.2■□□□□ 0.98
COL27A1-201ENST00000356083 NFXL1Q6ZNB6 911 aa21.19■□□□□ 0.98
COL27A1-201ENST00000356083 ZNF771Q7L3S4 317 aaPredicted RBP21.18■□□□□ 0.98
COL27A1-201ENST00000356083 WWC2Q6AWC2 1192 aa21.17■□□□□ 0.98
COL27A1-201ENST00000356083 CCDC97Q96F63 343 aaPredicted RBP21.17■□□□□ 0.98
COL27A1-201ENST00000356083 CHMP4AQ9BY43 222 aa21.17■□□□□ 0.98
COL27A1-201ENST00000356083 RCAN3Q9UKA8 241 aa21.17■□□□□ 0.98
COL27A1-201ENST00000356083 HOMER1Q86YM7 354 aa21.17■□□□□ 0.98
COL27A1-201ENST00000356083 PMFBP1Q8TBY8 1022 aa21.17■□□□□ 0.98
COL27A1-201ENST00000356083 RBM33Q96EV2 1170 aaKnown RBP21.17■□□□□ 0.98
COL27A1-201ENST00000356083 GPS2Q13227 327 aa21.16■□□□□ 0.98
COL27A1-201ENST00000356083 CCDC27Q2M243 656 aa21.16■□□□□ 0.98
COL27A1-201ENST00000356083 CCDC47Q96A33 483 aaKnown RBP21.16■□□□□ 0.98
COL27A1-201ENST00000356083 WDR70Q9NW82 654 aa21.15■□□□□ 0.98
COL27A1-201ENST00000356083 C9orf78Q9NZ63 289 aaPredicted RBP21.15■□□□□ 0.98
COL27A1-201ENST00000356083 MAP7D2Q96T17 732 aa21.14■□□□□ 0.97
COL27A1-201ENST00000356083 RUFY1Q96T51 708 aa21.14■□□□□ 0.97
COL27A1-201ENST00000356083 ROCK2O75116 1388 aaKnown RBP21.14■□□□□ 0.97
COL27A1-201ENST00000356083 TCERG1O14776 1098 aaKnown RBP21.14■□□□□ 0.97
COL27A1-201ENST00000356083 ANKRD20A12PQ8NF67 263 aa21.14■□□□□ 0.97
COL27A1-201ENST00000356083 KTN1Q86UP2 1357 aaKnown RBP21.14■□□□□ 0.97
COL27A1-201ENST00000356083 PLIN1O60240 522 aa21.14■□□□□ 0.97
COL27A1-201ENST00000356083 ANKRD45Q5TZF3 282 aa21.13■□□□□ 0.97
COL27A1-201ENST00000356083 TTLL5Q6EMB2 1281 aa21.13■□□□□ 0.97
COL27A1-201ENST00000356083 RRP7AQ9Y3A4 280 aaKnown RBP21.13■□□□□ 0.97
COL27A1-201ENST00000356083 AK7Q96M32 723 aa21.12■□□□□ 0.97
COL27A1-201ENST00000356083 CCNB3Q8WWL7 1395 aa21.12■□□□□ 0.97
COL27A1-201ENST00000356083 ERICH2A1L162 156 aa21.12■□□□□ 0.97
COL27A1-201ENST00000356083 ZNF428Q96B54 188 aa21.11■□□□□ 0.97
COL27A1-201ENST00000356083 TTC5Q8N0Z6 440 aa21.11■□□□□ 0.97
COL27A1-201ENST00000356083 CPLX1O14810 134 aa21.11■□□□□ 0.97
COL27A1-201ENST00000356083 CPLX2Q6PUV4 134 aaKnown RBP21.11■□□□□ 0.97
COL27A1-201ENST00000356083 DHX37Q8IY37 1157 aaKnown RBP21.1■□□□□ 0.97
COL27A1-201ENST00000356083 PLCD4Q9BRC7 762 aa21.1■□□□□ 0.97
COL27A1-201ENST00000356083 TRDNQ13061 729 aa21.1■□□□□ 0.97
COL27A1-201ENST00000356083 BCL2L13Q9BXK5 485 aa21.09■□□□□ 0.97
COL27A1-201ENST00000356083 NEFHP12036 1026 aa21.08■□□□□ 0.96
COL27A1-201ENST00000356083 TEFQ10587 303 aa21.08■□□□□ 0.96
COL27A1-201ENST00000356083 OFD1O75665 1012 aa21.07■□□□□ 0.96
COL27A1-201ENST00000356083 DIAPH3Q9NSV4 1193 aa21.07■□□□□ 0.96
COL27A1-201ENST00000356083 TERF2IPQ9NYB0 399 aa21.07■□□□□ 0.96
COL27A1-201ENST00000356083 NEXNQ0ZGT2 675 aa21.06■□□□□ 0.96
COL27A1-201ENST00000356083 FAM177BA6PVY3 158 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms