RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 NCOA2Q15596 1464 aa10.91□□□□□ -0.66
ATG4A-201ENST00000343524 POTEIP0CG38 1075 aa10.9□□□□□ -0.66
ATG4A-201ENST00000343524 DDRGK1Q96HY6 314 aa10.9□□□□□ -0.66
ATG4A-201ENST00000343524 TONSLQ96HA7 1378 aa10.9□□□□□ -0.66
ATG4A-201ENST00000343524 MAGI3Q5TCQ9 1506 aa10.9□□□□□ -0.66
ATG4A-201ENST00000343524 GSE1Q14687 1217 aa10.9□□□□□ -0.67
ATG4A-201ENST00000343524 SMG6Q86US8 1419 aaKnown RBP10.89□□□□□ -0.67
ATG4A-201ENST00000343524 TIAM1Q13009 1591 aa10.89□□□□□ -0.67
ATG4A-201ENST00000343524 BCORL1Q5H9F3 1711 aa10.89□□□□□ -0.67
ATG4A-201ENST00000343524 MADDQ8WXG6 1647 aa10.89□□□□□ -0.67
ATG4A-201ENST00000343524 KANK4Q5T7N3 995 aaPredicted RBP10.88□□□□□ -0.67
ATG4A-201ENST00000343524 KDM5BQ9UGL1 1544 aa10.88□□□□□ -0.67
ATG4A-201ENST00000343524 CNTLNQ9NXG0 1405 aa10.88□□□□□ -0.67
ATG4A-201ENST00000343524 PRXQ9BXM0 1461 aa10.88□□□□□ -0.67
ATG4A-201ENST00000343524 CLCN6P51797 869 aa10.87□□□□□ -0.67
ATG4A-201ENST00000343524 TCERG1O14776 1098 aaKnown RBP10.86□□□□□ -0.67
ATG4A-201ENST00000343524 UACAQ9BZF9 1416 aa10.86□□□□□ -0.67
ATG4A-201ENST00000343524 ZNF579Q8NAF0 562 aaKnown RBP10.86□□□□□ -0.67
ATG4A-201ENST00000343524 BIVM-ERCC5R4GMW8 1640 aa10.85□□□□□ -0.67
ATG4A-201ENST00000343524 LHX8Q68G74 356 aa10.85□□□□□ -0.67
ATG4A-201ENST00000343524 RNF123Q5XPI4 1314 aa10.85□□□□□ -0.67
ATG4A-201ENST00000343524 CD109Q6YHK3 1445 aa10.84□□□□□ -0.67
ATG4A-201ENST00000343524 ARAP3Q8WWN8 1544 aa10.84□□□□□ -0.67
ATG4A-201ENST00000343524 MS4A1P11836 297 aa10.84□□□□□ -0.67
ATG4A-201ENST00000343524 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.84□□□□□ -0.67
ATG4A-201ENST00000343524 CFAP43Q8NDM7 1665 aa10.83□□□□□ -0.67
ATG4A-201ENST00000343524 ZRANB1Q9UGI0 708 aa10.83□□□□□ -0.68
ATG4A-201ENST00000343524 BRPF3Q9ULD4 1205 aa10.83□□□□□ -0.68
ATG4A-201ENST00000343524 ZCCHC11Q5TAX3 1644 aaKnown RBP10.82□□□□□ -0.68
ATG4A-201ENST00000343524 SIN3AQ96ST3 1273 aa10.82□□□□□ -0.68
ATG4A-201ENST00000343524 CARMIL2Q6F5E8 1435 aa10.82□□□□□ -0.68
ATG4A-201ENST00000343524 IQSEC2Q5JU85 1478 aa10.82□□□□□ -0.68
ATG4A-201ENST00000343524 WDR7Q9Y4E6 1490 aa10.82□□□□□ -0.68
ATG4A-201ENST00000343524 RIMS1Q86UR5 1692 aaKnown RBP10.82□□□□□ -0.68
ATG4A-201ENST00000343524 DAXXQ9UER7 740 aaPredicted RBP10.82□□□□□ -0.68
ATG4A-201ENST00000343524 POLR1AO95602 1720 aaPredicted RBP10.8□□□□□ -0.68
ATG4A-201ENST00000343524 MNX1P50219 401 aaPredicted RBP10.8□□□□□ -0.68
ATG4A-201ENST00000343524 LAS1LQ9Y4W2 734 aaKnown RBP10.8□□□□□ -0.68
ATG4A-201ENST00000343524 YEATS2Q9ULM3 1422 aa10.8□□□□□ -0.68
ATG4A-201ENST00000343524 NUDCQ9Y266 331 aa10.8□□□□□ -0.68
ATG4A-201ENST00000343524 LRRC9Q6ZRR7 1453 aa10.79□□□□□ -0.68
ATG4A-201ENST00000343524 PROM2Q8N271 834 aa10.79□□□□□ -0.68
ATG4A-201ENST00000343524 ARHGAP35Q9NRY4 1499 aa10.79□□□□□ -0.68
ATG4A-201ENST00000343524 AMER1Q5JTC6 1135 aaPredicted RBP10.78□□□□□ -0.68
ATG4A-201ENST00000343524 ARID4BQ4LE39 1312 aaPredicted RBP10.77□□□□□ -0.69
ATG4A-201ENST00000343524 RRP9O43818 475 aaKnown RBP10.77□□□□□ -0.69
ATG4A-201ENST00000343524 MRS2Q9HD23 443 aa10.77□□□□□ -0.69
ATG4A-201ENST00000343524 HIRIP3Q9BW71 556 aaPredicted RBP10.76□□□□□ -0.69
ATG4A-201ENST00000343524 STRCQ7RTU9 1775 aa10.76□□□□□ -0.69
ATG4A-201ENST00000343524 LTBP4Q8N2S1 1624 aa10.75□□□□□ -0.69
ATG4A-201ENST00000343524 MED1Q15648 1581 aaPredicted RBP10.75□□□□□ -0.69
ATG4A-201ENST00000343524 NPM2Q86SE8 214 aaKnown RBP10.75□□□□□ -0.69
ATG4A-201ENST00000343524 PRKRIP1Q9H875 184 aaPredicted RBP10.75□□□□□ -0.69
ATG4A-201ENST00000343524 PODXL2Q9NZ53 605 aa10.75□□□□□ -0.69
ATG4A-201ENST00000343524 PHLDB1Q86UU1 1377 aa10.75□□□□□ -0.69
ATG4A-201ENST00000343524 CCDC18Q5T9S5 1454 aa10.75□□□□□ -0.69
ATG4A-201ENST00000343524 AKNAQ7Z591 1439 aa10.74□□□□□ -0.69
ATG4A-201ENST00000343524 PDE4AP27815 886 aa10.74□□□□□ -0.69
ATG4A-201ENST00000343524 BACH2Q9BYV9 841 aa10.74□□□□□ -0.69
ATG4A-201ENST00000343524 PTPRTO14522 1441 aa10.74□□□□□ -0.69
ATG4A-201ENST00000343524 RANGAP1P46060 587 aaPredicted RBP10.74□□□□□ -0.69
ATG4A-201ENST00000343524 NFKBIBQ15653 356 aa10.74□□□□□ -0.69
ATG4A-201ENST00000343524 FRAT1Q92837 279 aaPredicted RBP10.74□□□□□ -0.69
ATG4A-201ENST00000343524 GALR2O43603 387 aaPredicted RBP10.73□□□□□ -0.69
ATG4A-201ENST00000343524 FAM9BQ8IZU0 186 aa10.73□□□□□ -0.69
ATG4A-201ENST00000343524 DCBLD2Q96PD2 775 aa10.73□□□□□ -0.69
ATG4A-201ENST00000343524 ZMYND15Q9H091 742 aa10.73□□□□□ -0.69
ATG4A-201ENST00000343524 NCOA1Q15788 1441 aa10.73□□□□□ -0.69
ATG4A-201ENST00000343524 VSIG10Q8N0Z9 540 aa10.72□□□□□ -0.69
ATG4A-201ENST00000343524 EIF4G2P78344 907 aaKnown RBP eCLIP10.72□□□□□ -0.69
ATG4A-201ENST00000343524 L1TD1Q5T7N2 865 aaKnown RBP10.72□□□□□ -0.69
ATG4A-201ENST00000343524 PTPN23Q9H3S7 1636 aa10.71□□□□□ -0.7
ATG4A-201ENST00000343524 PREX1Q8TCU6 1659 aa10.7□□□□□ -0.7
ATG4A-201ENST00000343524 RAPGEF3O95398 923 aa10.7□□□□□ -0.7
ATG4A-201ENST00000343524 HFM1A2PYH4 1435 aa10.7□□□□□ -0.7
ATG4A-201ENST00000343524 KIF27Q86VH2 1401 aa10.7□□□□□ -0.7
ATG4A-201ENST00000343524 CCDC7Q96M83 1385 aa10.7□□□□□ -0.7
ATG4A-201ENST00000343524 DISP1Q96F81 1524 aa10.7□□□□□ -0.7
ATG4A-201ENST00000343524 HSP90AA2PQ14568 343 aaPredicted RBP10.7□□□□□ -0.7
ATG4A-201ENST00000343524 HECW1Q76N89 1606 aa10.7□□□□□ -0.7
ATG4A-201ENST00000343524 HSP90AA1P07900 732 aaKnown RBP10.69□□□□□ -0.7
ATG4A-201ENST00000343524 PHF12Q96QT6 1004 aa10.69□□□□□ -0.7
ATG4A-201ENST00000343524 HSPA5P11021 654 aaKnown RBP10.68□□□□□ -0.7
ATG4A-201ENST00000343524 FAM50AQ14320 339 aaKnown RBP10.68□□□□□ -0.7
ATG4A-201ENST00000343524 POGZQ7Z3K3 1410 aa10.68□□□□□ -0.7
ATG4A-201ENST00000343524 ARHGEF40Q8TER5 1519 aa10.68□□□□□ -0.7
ATG4A-201ENST00000343524 FRMPD1Q5SYB0 1578 aa10.68□□□□□ -0.7
ATG4A-201ENST00000343524 TTC37Q6PGP7 1564 aa10.68□□□□□ -0.7
ATG4A-201ENST00000343524 IQGAP2Q13576 1575 aa10.67□□□□□ -0.7
ATG4A-201ENST00000343524 IGF1RP08069 1367 aa10.67□□□□□ -0.7
ATG4A-201ENST00000343524 UBAP1LF5GYI3 381 aa10.66□□□□□ -0.7
ATG4A-201ENST00000343524 FMN1Q68DA7 1419 aa10.65□□□□□ -0.7
ATG4A-201ENST00000343524 NEO1Q92859 1461 aa10.64□□□□□ -0.71
ATG4A-201ENST00000343524 FYCO1Q9BQS8 1478 aa10.64□□□□□ -0.71
ATG4A-201ENST00000343524 FANCAO15360 1455 aa10.64□□□□□ -0.71
ATG4A-201ENST00000343524 RRP1P56182 461 aaKnown RBP10.64□□□□□ -0.71
ATG4A-201ENST00000343524 CCDC184Q52MB2 194 aa10.64□□□□□ -0.71
ATG4A-201ENST00000343524 PNNQ9H307 717 aaKnown RBP10.64□□□□□ -0.71
ATG4A-201ENST00000343524 GCC2Q8IWJ2 1684 aa10.62□□□□□ -0.71
ATG4A-201ENST00000343524 FER1L4A9Z1Z3 1794 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms