RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RALBP1Q15311 655 aa10.87□□□□□ -0.67
RTN3-202ENST00000339997 RSPH6AQ9H0K4 717 aa10.87□□□□□ -0.67
RTN3-202ENST00000339997 PANK3Q9H999 370 aa10.87□□□□□ -0.67
RTN3-202ENST00000339997 ISY1Q9ULR0 285 aaKnown RBP10.87□□□□□ -0.67
RTN3-202ENST00000339997 NUP155O75694 1391 aa10.86□□□□□ -0.67
RTN3-202ENST00000339997 APAF1O14727 1248 aa10.86□□□□□ -0.67
RTN3-202ENST00000339997 HSP90B1P14625 803 aaKnown RBP10.86□□□□□ -0.67
RTN3-202ENST00000339997 GNL2Q13823 731 aaKnown RBP10.86□□□□□ -0.67
RTN3-202ENST00000339997 C11orf95C9JLR9 678 aaPredicted RBP10.86□□□□□ -0.67
RTN3-202ENST00000339997 ANKRD45Q5TZF3 282 aa10.86□□□□□ -0.67
RTN3-202ENST00000339997 A0A0U1RQG5 324 aaPredicted RBP10.86□□□□□ -0.67
RTN3-202ENST00000339997 CHMP4BQ9H444 224 aaKnown RBP10.86□□□□□ -0.67
RTN3-202ENST00000339997 MPNDQ8N594 471 aa10.85□□□□□ -0.67
RTN3-202ENST00000339997 NPHP1O15259 732 aa10.85□□□□□ -0.67
RTN3-202ENST00000339997 USP35Q9P2H5 1018 aa10.85□□□□□ -0.67
RTN3-202ENST00000339997 RTF1Q92541 710 aaKnown RBP10.85□□□□□ -0.67
RTN3-202ENST00000339997 FRAT2O75474 233 aaPredicted RBP10.85□□□□□ -0.67
RTN3-202ENST00000339997 PMFBP1Q8TBY8 1022 aa10.85□□□□□ -0.67
RTN3-202ENST00000339997 BIVM-ERCC5R4GMW8 1640 aa10.85□□□□□ -0.67
RTN3-202ENST00000339997 ZNF592Q92610 1267 aa10.84□□□□□ -0.67
RTN3-202ENST00000339997 CARMIL1Q5VZK9 1371 aa10.84□□□□□ -0.67
RTN3-202ENST00000339997 SKAP1Q86WV1 359 aa10.84□□□□□ -0.67
RTN3-202ENST00000339997 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.84□□□□□ -0.67
RTN3-202ENST00000339997 CDCA7LQ96GN5 454 aa10.84□□□□□ -0.67
RTN3-202ENST00000339997 CLSTN1O94985 981 aa10.83□□□□□ -0.68
RTN3-202ENST00000339997 RILPL2Q969X0 211 aa10.83□□□□□ -0.68
RTN3-202ENST00000339997 CCAR2Q8N163 923 aaKnown RBP10.83□□□□□ -0.68
RTN3-202ENST00000339997 TRAK1Q9UPV9 953 aa10.82□□□□□ -0.68
RTN3-202ENST00000339997 PRM3Q9NNZ6 103 aa10.82□□□□□ -0.68
RTN3-202ENST00000339997 LTV1Q96GA3 475 aaPredicted RBP10.82□□□□□ -0.68
RTN3-202ENST00000339997 RNF214Q8ND24 703 aa10.81□□□□□ -0.68
RTN3-202ENST00000339997 HNRNPMP52272 730 aaKnown RBP eCLIP10.81□□□□□ -0.68
RTN3-202ENST00000339997 CENPQQ7L2Z9 268 aaPredicted RBP10.81□□□□□ -0.68
RTN3-202ENST00000339997 FBXW7Q969H0 707 aa10.81□□□□□ -0.68
RTN3-202ENST00000339997 ZBED9Q6R2W3 1325 aa10.8□□□□□ -0.68
RTN3-202ENST00000339997 PANK1Q8TE04 598 aa10.8□□□□□ -0.68
RTN3-202ENST00000339997 NECTIN2Q92692 538 aa10.8□□□□□ -0.68
RTN3-202ENST00000339997 SYAP1Q96A49 352 aaPredicted RBP10.8□□□□□ -0.68
RTN3-202ENST00000339997 RBM10P98175 930 aaKnown RBP10.79□□□□□ -0.68
RTN3-202ENST00000339997 LNPKQ9C0E8 428 aa10.79□□□□□ -0.68
RTN3-202ENST00000339997 CUX2O14529 1486 aa10.79□□□□□ -0.68
RTN3-202ENST00000339997 CCDC184Q52MB2 194 aa10.78□□□□□ -0.68
RTN3-202ENST00000339997 R3HCC1Q9Y3T6 440 aaKnown RBP10.78□□□□□ -0.68
RTN3-202ENST00000339997 MSH5O43196 834 aa10.77□□□□□ -0.68
RTN3-202ENST00000339997 FAM43AQ8N2R8 423 aa10.77□□□□□ -0.68
RTN3-202ENST00000339997 ARHGAP35Q9NRY4 1499 aa10.77□□□□□ -0.69
RTN3-202ENST00000339997 PDE3BQ13370 1112 aa10.77□□□□□ -0.69
RTN3-202ENST00000339997 ST18O60284 1047 aa10.76□□□□□ -0.69
RTN3-202ENST00000339997 MYBBP1AQ9BQG0 1328 aaKnown RBP10.76□□□□□ -0.69
RTN3-202ENST00000339997 DDX11L8A8MPP1 907 aa10.76□□□□□ -0.69
RTN3-202ENST00000339997 ZNF771Q7L3S4 317 aaPredicted RBP10.76□□□□□ -0.69
RTN3-202ENST00000339997 FHAD1B1AJZ9 1412 aa10.76□□□□□ -0.69
RTN3-202ENST00000339997 STK31Q9BXU1 1019 aa10.75□□□□□ -0.69
RTN3-202ENST00000339997 MAPK8IP2Q13387 824 aaPredicted RBP10.75□□□□□ -0.69
RTN3-202ENST00000339997 MCTP1Q6DN14 999 aa10.75□□□□□ -0.69
RTN3-202ENST00000339997 PES1O00541 588 aaKnown RBP10.75□□□□□ -0.69
RTN3-202ENST00000339997 HDGFL2Q7Z4V5 671 aaPredicted RBP10.75□□□□□ -0.69
RTN3-202ENST00000339997 FOSBP53539 338 aa10.74□□□□□ -0.69
RTN3-202ENST00000339997 TOMM22Q9NS69 142 aa10.74□□□□□ -0.69
RTN3-202ENST00000339997 KIF3BO15066 747 aa10.74□□□□□ -0.69
RTN3-202ENST00000339997 NOC3LQ8WTT2 800 aaKnown RBP10.74□□□□□ -0.69
RTN3-202ENST00000339997 SF3A1Q15459 793 aaKnown RBP10.73□□□□□ -0.69
RTN3-202ENST00000339997 TDRD9Q8NDG6 1382 aaKnown RBP10.73□□□□□ -0.69
RTN3-202ENST00000339997 GORABQ5T7V8 394 aa10.73□□□□□ -0.69
RTN3-202ENST00000339997 ZNF428Q96B54 188 aa10.73□□□□□ -0.69
RTN3-202ENST00000339997 NGEFQ8N5V2 710 aa10.73□□□□□ -0.69
RTN3-202ENST00000339997 PTMSP20962 102 aa10.72□□□□□ -0.69
RTN3-202ENST00000339997 ZKSCAN2Q63HK3 967 aa10.72□□□□□ -0.69
RTN3-202ENST00000339997 KRI1Q8N9T8 703 aaKnown RBP10.72□□□□□ -0.69
RTN3-202ENST00000339997 KIF16BQ96L93 1317 aa10.72□□□□□ -0.69
RTN3-202ENST00000339997 FHOD3Q2V2M9 1422 aa10.72□□□□□ -0.69
RTN3-202ENST00000339997 CHMP5Q9NZZ3 219 aa10.72□□□□□ -0.69
RTN3-202ENST00000339997 BECN2A8MW95 431 aa10.71□□□□□ -0.69
RTN3-202ENST00000339997 PATL2C9JE40 543 aaKnown RBP10.71□□□□□ -0.69
RTN3-202ENST00000339997 FMN1Q68DA7 1419 aa10.71□□□□□ -0.69
RTN3-202ENST00000339997 WDR97A6NE52 1622 aa10.71□□□□□ -0.7
RTN3-202ENST00000339997 RASSF8Q8NHQ8 419 aa10.71□□□□□ -0.7
RTN3-202ENST00000339997 C22orf23Q9BZE7 217 aa10.71□□□□□ -0.7
RTN3-202ENST00000339997 ANO2Q9NQ90 1003 aa10.71□□□□□ -0.7
RTN3-202ENST00000339997 WASHC2AQ641Q2 1341 aa10.71□□□□□ -0.7
RTN3-202ENST00000339997 KIF7Q2M1P5 1343 aa10.7□□□□□ -0.7
RTN3-202ENST00000339997 HMMRO75330 724 aa10.7□□□□□ -0.7
RTN3-202ENST00000339997 WWC1Q8IX03 1113 aa10.7□□□□□ -0.7
RTN3-202ENST00000339997 AKNAQ7Z591 1439 aa10.7□□□□□ -0.7
RTN3-202ENST00000339997 VPS37CA5D8V6 355 aaPredicted RBP10.7□□□□□ -0.7
RTN3-202ENST00000339997 KIF15Q9NS87 1388 aa10.7□□□□□ -0.7
RTN3-202ENST00000339997 TRAK2O60296 914 aa10.69□□□□□ -0.7
RTN3-202ENST00000339997 ADAMTS8Q9UP79 889 aa10.69□□□□□ -0.7
RTN3-202ENST00000339997 CSB-PGBD3P0DP91 1061 aa10.69□□□□□ -0.7
RTN3-202ENST00000339997 USP47Q96K76 1375 aa10.69□□□□□ -0.7
RTN3-202ENST00000339997 RAPGEF2Q9Y4G8 1499 aa10.69□□□□□ -0.7
RTN3-202ENST00000339997 CAVIN1Q6NZI2 390 aaKnown RBP10.69□□□□□ -0.7
RTN3-202ENST00000339997 PKNOX2Q96KN3 472 aa10.69□□□□□ -0.7
RTN3-202ENST00000339997 E9PSI1 815 aa10.68□□□□□ -0.7
RTN3-202ENST00000339997 GOLGA6L19H0YKK7 550 aa10.68□□□□□ -0.7
RTN3-202ENST00000339997 H3BQV1 296 aa10.68□□□□□ -0.7
RTN3-202ENST00000339997 EIF2S2P20042 333 aaKnown RBP10.68□□□□□ -0.7
RTN3-202ENST00000339997 IFFO2Q5TF58 517 aa10.68□□□□□ -0.7
RTN3-202ENST00000339997 KDM4AO75164 1064 aa10.68□□□□□ -0.7
RTN3-202ENST00000339997 SKIDA1Q1XH10 827 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms