RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 MAP7D2Q96T17 732 aa12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 RAD54L2Q9Y4B4 1467 aa12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 ARAP1Q96P48 1450 aa12.35□□□□□ -0.43
PTCHD4-201ENST00000339488 ZNF326Q5BKZ1 582 aaKnown RBP12.35□□□□□ -0.43
PTCHD4-201ENST00000339488 WDR62O43379 1518 aa12.35□□□□□ -0.43
PTCHD4-201ENST00000339488 FHAD1B1AJZ9 1412 aa12.35□□□□□ -0.43
PTCHD4-201ENST00000339488 NCOA2Q15596 1464 aa12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 EIF4G2P78344 907 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 ANTXR1Q9H6X2 564 aa12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 TNNT2P45379 298 aaPredicted RBP12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 DNTTIP2Q5QJE6 756 aaKnown RBP12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 USP19O94966 1318 aa12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 CCDC7Q96M83 1385 aa12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 P3H3Q8IVL6 736 aa12.33□□□□□ -0.44
PTCHD4-201ENST00000339488 NCLP19338 710 aaKnown RBP12.33□□□□□ -0.44
PTCHD4-201ENST00000339488 CHMP4CQ96CF2 233 aa12.33□□□□□ -0.44
PTCHD4-201ENST00000339488 KTN1Q86UP2 1357 aaKnown RBP12.33□□□□□ -0.44
PTCHD4-201ENST00000339488 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.32□□□□□ -0.44
PTCHD4-201ENST00000339488 FAM177BA6PVY3 158 aa12.32□□□□□ -0.44
PTCHD4-201ENST00000339488 MSNP26038 577 aaKnown RBP12.32□□□□□ -0.44
PTCHD4-201ENST00000339488 CCDC94Q9BW85 323 aaPredicted RBP12.31□□□□□ -0.44
PTCHD4-201ENST00000339488 BRD2P25440 801 aaKnown RBP12.3□□□□□ -0.44
PTCHD4-201ENST00000339488 ZSCAN30Q86W11 494 aa12.3□□□□□ -0.44
PTCHD4-201ENST00000339488 BECN1Q14457 450 aa12.29□□□□□ -0.44
PTCHD4-201ENST00000339488 SPDYE4A6NLX3 237 aa12.29□□□□□ -0.44
PTCHD4-201ENST00000339488 KDM2BQ8NHM5 1336 aa12.29□□□□□ -0.44
PTCHD4-201ENST00000339488 KIF7Q2M1P5 1343 aa12.28□□□□□ -0.44
PTCHD4-201ENST00000339488 ERICH3Q5RHP9 1530 aa12.28□□□□□ -0.44
PTCHD4-201ENST00000339488 PANK3Q9H999 370 aa12.28□□□□□ -0.44
PTCHD4-201ENST00000339488 TEX2Q8IWB9 1127 aa12.28□□□□□ -0.44
PTCHD4-201ENST00000339488 HAP1P54257 671 aaPredicted RBP12.27□□□□□ -0.45
PTCHD4-201ENST00000339488 ATP2B3Q16720 1220 aa12.27□□□□□ -0.45
PTCHD4-201ENST00000339488 PNISRQ8TF01 805 aaKnown RBP12.27□□□□□ -0.45
PTCHD4-201ENST00000339488 TBC1D2Q9BYX2 928 aa12.27□□□□□ -0.45
PTCHD4-201ENST00000339488 TARBP1Q13395 1621 aaKnown RBP12.26□□□□□ -0.45
PTCHD4-201ENST00000339488 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.26□□□□□ -0.45
PTCHD4-201ENST00000339488 KDM5BQ9UGL1 1544 aa12.25□□□□□ -0.45
PTCHD4-201ENST00000339488 ZNF608Q9ULD9 1512 aaPredicted RBP12.25□□□□□ -0.45
PTCHD4-201ENST00000339488 KIF20AO95235 890 aa12.25□□□□□ -0.45
PTCHD4-201ENST00000339488 PHLDB1Q86UU1 1377 aa12.25□□□□□ -0.45
PTCHD4-201ENST00000339488 IRX5P78411 483 aaPredicted RBP12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 IRX3P78415 501 aaPredicted RBP12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 TDRD9Q8NDG6 1382 aaKnown RBP12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 RGS22Q8NE09 1264 aa12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 MAP3K1Q13233 1512 aa12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 NCOA1Q15788 1441 aa12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 CENPQQ7L2Z9 268 aaPredicted RBP12.23□□□□□ -0.45
PTCHD4-201ENST00000339488 KCNG1Q9UIX4 513 aa12.23□□□□□ -0.45
PTCHD4-201ENST00000339488 LETM1O95202 739 aaPredicted RBP12.23□□□□□ -0.45
PTCHD4-201ENST00000339488 NGEFQ8N5V2 710 aa12.23□□□□□ -0.45
PTCHD4-201ENST00000339488 DYNC1I1O14576 645 aa12.22□□□□□ -0.45
PTCHD4-201ENST00000339488 ABCA10Q8WWZ4 1543 aa12.22□□□□□ -0.45
PTCHD4-201ENST00000339488 KCNJ4P48050 445 aa12.22□□□□□ -0.45
PTCHD4-201ENST00000339488 GTPBP4Q9BZE4 634 aaKnown RBP12.22□□□□□ -0.45
PTCHD4-201ENST00000339488 NASPP49321 788 aaPredicted RBP12.21□□□□□ -0.45
PTCHD4-201ENST00000339488 SAMD1Q6SPF0 538 aaPredicted RBP12.21□□□□□ -0.45
PTCHD4-201ENST00000339488 AQRO60306 1485 aaKnown RBP eCLIP12.21□□□□□ -0.459e-6■■□□□ 13.1
PTCHD4-201ENST00000339488 ZNF710Q8N1W2 664 aa12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 CCDC173Q0VFZ6 552 aa12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 ZNF771Q7L3S4 317 aaPredicted RBP12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 MTERF4Q7Z6M4 381 aaKnown RBP12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 CHRM1P11229 460 aaPredicted RBP12.19□□□□□ -0.46
PTCHD4-201ENST00000339488 TERF1P54274 439 aa12.19□□□□□ -0.46
PTCHD4-201ENST00000339488 IFT140Q96RY7 1462 aa12.19□□□□□ -0.46
PTCHD4-201ENST00000339488 KIF27Q86VH2 1401 aa12.19□□□□□ -0.46
PTCHD4-201ENST00000339488 NCBP3Q53F19 620 aaKnown RBP12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 TRERF1Q96PN7 1200 aa12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 SLC52A1Q9NWF4 448 aa12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 DHX29Q7Z478 1369 aaKnown RBP12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 CNPY4Q8N129 248 aa12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 ATP1B4Q9UN42 357 aaPredicted RBP12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 MYCNP04198 464 aaPredicted RBP12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 MLECQ14165 292 aa12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 RNF216Q9NWF9 866 aaPredicted RBP12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 MYOM3Q5VTT5 1437 aa12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 MPNDQ8N594 471 aa12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 ABCA5Q8WWZ7 1642 aa12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 EIF4G3O43432 1585 aaKnown RBP12.16□□□□□ -0.46
PTCHD4-201ENST00000339488 SASS6Q6UVJ0 657 aa12.16□□□□□ -0.46
PTCHD4-201ENST00000339488 PPP1R9BQ96SB3 815 aa12.15□□□□□ -0.46
PTCHD4-201ENST00000339488 NLRP1Q9C000 1473 aa12.15□□□□□ -0.46
PTCHD4-201ENST00000339488 L3MBTL2Q969R5 705 aa12.15□□□□□ -0.46
PTCHD4-201ENST00000339488 FOXD4L1Q9NU39 408 aa12.15□□□□□ -0.46
PTCHD4-201ENST00000339488 GAPVD1Q14C86 1478 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 NBPF8Q3BBV2 869 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 CHMP5Q9NZZ3 219 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 TRIM6-TRIM34B2RNG4 842 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 U2AF2P26368 475 aaKnown RBP eCLIP12.14□□□□□ -0.478e-14■■■□□ 16.2
PTCHD4-201ENST00000339488 TRIM34Q9BYJ4 488 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 CCDC18Q5T9S5 1454 aa12.13□□□□□ -0.47
PTCHD4-201ENST00000339488 DDX11L8A8MPP1 907 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 IGHDP01880 384 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 IGF1RP08069 1367 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 PRR29P0C7W0 189 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 WWC1Q8IX03 1113 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 PBRM1Q86U86 1689 aa12.11□□□□□ -0.47
PTCHD4-201ENST00000339488 ZNF500O60304 480 aaPredicted RBP12.11□□□□□ -0.47
PTCHD4-201ENST00000339488 NOL7Q9UMY1 257 aaKnown RBP12.11□□□□□ -0.47
PTCHD4-201ENST00000339488 PRXQ9BXM0 1461 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms