RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PMFBP1Q8TBY8 1022 aa15.7■□□□□ 0.1
SDC3-201ENST00000336798 PATL2C9JE40 543 aaKnown RBP15.69■□□□□ 0.1
SDC3-201ENST00000336798 TPD52L1Q16890 204 aaPredicted RBP15.69■□□□□ 0.1
SDC3-201ENST00000336798 HMMRO75330 724 aa15.69■□□□□ 0.1
SDC3-201ENST00000336798 KIF3BO15066 747 aa15.69■□□□□ 0.1
SDC3-201ENST00000336798 TNIKQ9UKE5 1360 aa15.69■□□□□ 0.1
SDC3-201ENST00000336798 CCAR2Q8N163 923 aaKnown RBP15.68■□□□□ 0.1
SDC3-201ENST00000336798 FBXW7Q969H0 707 aa15.68■□□□□ 0.1
SDC3-201ENST00000336798 CCDC34Q96HJ3 373 aa15.68■□□□□ 0.1
SDC3-201ENST00000336798 KIF16BQ96L93 1317 aa15.68■□□□□ 0.1
SDC3-201ENST00000336798 TPM3P06753 285 aa15.68■□□□□ 0.1
SDC3-201ENST00000336798 BCL2L13Q9BXK5 485 aa15.67■□□□□ 0.1
SDC3-201ENST00000336798 PTMSP20962 102 aa15.67■□□□□ 0.1
SDC3-201ENST00000336798 H3BQV1 296 aa15.67■□□□□ 0.1
SDC3-201ENST00000336798 IFFO2Q5TF58 517 aa15.67■□□□□ 0.1
SDC3-201ENST00000336798 NUP155O75694 1391 aa15.67■□□□□ 0.1
SDC3-201ENST00000336798 EID1Q9Y6B2 187 aa15.67■□□□□ 0.1
SDC3-201ENST00000336798 AEBP2Q6ZN18 517 aaPredicted RBP15.66■□□□□ 0.1
SDC3-201ENST00000336798 KLHL34Q8N239 644 aa15.66■□□□□ 0.1
SDC3-201ENST00000336798 NECTIN2Q92692 538 aa15.66■□□□□ 0.1
SDC3-201ENST00000336798 SAMD1Q6SPF0 538 aaPredicted RBP15.66■□□□□ 0.1
SDC3-201ENST00000336798 EVA1CP58658 441 aa15.65■□□□□ 0.1
SDC3-201ENST00000336798 TRAK1Q9UPV9 953 aa15.65■□□□□ 0.1
SDC3-201ENST00000336798 HNRNPMP52272 730 aaKnown RBP eCLIP15.65■□□□□ 0.1
SDC3-201ENST00000336798 CCDC180Q9P1Z9 1646 aa15.65■□□□□ 0.1
SDC3-201ENST00000336798 TERF2IPQ9NYB0 399 aa15.65■□□□□ 0.1
SDC3-201ENST00000336798 MPHOSPH9Q99550 1183 aa15.64■□□□□ 0.09
SDC3-201ENST00000336798 SETD5Q9C0A6 1442 aa15.64■□□□□ 0.09
SDC3-201ENST00000336798 CCER2I3L3R5 266 aa15.64■□□□□ 0.09
SDC3-201ENST00000336798 CENPJQ9HC77 1338 aaPredicted RBP15.63■□□□□ 0.09
SDC3-201ENST00000336798 CUX2O14529 1486 aa15.63■□□□□ 0.09
SDC3-201ENST00000336798 SLC4A3P48751 1232 aa15.63■□□□□ 0.09
SDC3-201ENST00000336798 CSPP1Q1MSJ5 1256 aa15.63■□□□□ 0.09
SDC3-201ENST00000336798 MCTP1Q6DN14 999 aa15.63■□□□□ 0.09
SDC3-201ENST00000336798 KRI1Q8N9T8 703 aaKnown RBP15.63■□□□□ 0.09
SDC3-201ENST00000336798 CARMIL1Q5VZK9 1371 aa15.63■□□□□ 0.09
SDC3-201ENST00000336798 SYTL4Q96C24 671 aaPredicted RBP15.63■□□□□ 0.09
SDC3-201ENST00000336798 TCEAL9Q9UHQ7 104 aa15.63■□□□□ 0.09
SDC3-201ENST00000336798 ARHGAP35Q9NRY4 1499 aa15.62■□□□□ 0.09
SDC3-201ENST00000336798 RALBP1Q15311 655 aa15.62■□□□□ 0.09
SDC3-201ENST00000336798 FAM184AQ8NB25 1140 aa15.62■□□□□ 0.09
SDC3-201ENST00000336798 EIF2S2P20042 333 aaKnown RBP15.62■□□□□ 0.09
SDC3-201ENST00000336798 FHAD1B1AJZ9 1412 aa15.61■□□□□ 0.09
SDC3-201ENST00000336798 TCERG1O14776 1098 aaKnown RBP15.61■□□□□ 0.09
SDC3-201ENST00000336798 KANK4Q5T7N3 995 aaPredicted RBP15.61■□□□□ 0.09
SDC3-201ENST00000336798 TRIM34Q9BYJ4 488 aa15.61■□□□□ 0.09
SDC3-201ENST00000336798 AKAP17AQ02040 695 aaKnown RBP15.61■□□□□ 0.09
SDC3-201ENST00000336798 WASHC2CQ9Y4E1 1318 aa15.61■□□□□ 0.09
SDC3-201ENST00000336798 CTDP1Q9Y5B0 961 aaPredicted RBP15.61■□□□□ 0.09
SDC3-201ENST00000336798 ANKRD45Q5TZF3 282 aa15.6■□□□□ 0.09
SDC3-201ENST00000336798 ST18O60284 1047 aa15.6■□□□□ 0.09
SDC3-201ENST00000336798 CNKSR2Q8WXI2 1034 aa15.6■□□□□ 0.09
SDC3-201ENST00000336798 PLIN1O60240 522 aa15.59■□□□□ 0.09
SDC3-201ENST00000336798 PCMTD1Q96MG8 357 aaPredicted RBP15.59■□□□□ 0.09
SDC3-201ENST00000336798 EIF3AQ14152 1382 aaKnown RBP15.59■□□□□ 0.09
SDC3-201ENST00000336798 DHX16O60231 1041 aaKnown RBP15.59■□□□□ 0.09
SDC3-201ENST00000336798 FOSBP53539 338 aa15.59■□□□□ 0.09
SDC3-201ENST00000336798 C1orf141Q5JVX7 400 aa15.59■□□□□ 0.09
SDC3-201ENST00000336798 ZNF592Q92610 1267 aa15.57■□□□□ 0.08
SDC3-201ENST00000336798 APPP05067 770 aa15.57■□□□□ 0.08
SDC3-201ENST00000336798 HDAC5Q9UQL6 1122 aa15.57■□□□□ 0.08
SDC3-201ENST00000336798 TSR1Q2NL82 804 aaKnown RBP15.57■□□□□ 0.08
SDC3-201ENST00000336798 MEX3CQ5U5Q3 659 aaKnown RBP15.56■□□□□ 0.08
SDC3-201ENST00000336798 BCL11BQ9C0K0 894 aaPredicted RBP15.56■□□□□ 0.08
SDC3-201ENST00000336798 EFCAB2Q5VUJ9 269 aa15.56■□□□□ 0.08
SDC3-201ENST00000336798 CHMP4AQ9BY43 222 aa15.55■□□□□ 0.08
SDC3-201ENST00000336798 LMOD3Q0VAK6 560 aa15.55■□□□□ 0.08
SDC3-201ENST00000336798 GOLGA6L19H0YKK7 550 aa15.54■□□□□ 0.08
SDC3-201ENST00000336798 PHF14O94880 888 aa15.54■□□□□ 0.08
SDC3-201ENST00000336798 NACADO15069 1562 aa15.54■□□□□ 0.08
SDC3-201ENST00000336798 SOGA1O94964 1423 aa15.54■□□□□ 0.08
SDC3-201ENST00000336798 SYNE3Q6ZMZ3 975 aa15.54■□□□□ 0.08
SDC3-201ENST00000336798 IPO9Q96P70 1041 aaKnown RBP15.54■□□□□ 0.08
SDC3-201ENST00000336798 NOL10Q9BSC4 688 aaKnown RBP15.54■□□□□ 0.08
SDC3-201ENST00000336798 KDM4AO75164 1064 aa15.53■□□□□ 0.08
SDC3-201ENST00000336798 BECN2A8MW95 431 aa15.53■□□□□ 0.08
SDC3-201ENST00000336798 TPM2P07951 284 aa15.53■□□□□ 0.08
SDC3-201ENST00000336798 CWC22Q9HCG8 908 aaKnown RBP15.53■□□□□ 0.08
SDC3-201ENST00000336798 VPS37DQ86XT2 251 aa15.53■□□□□ 0.08
SDC3-201ENST00000336798 KIF3AQ9Y496 699 aa15.53■□□□□ 0.08
SDC3-201ENST00000336798 TTC5Q8N0Z6 440 aa15.52■□□□□ 0.08
SDC3-201ENST00000336798 DDX49Q9Y6V7 483 aaKnown RBP15.51■□□□□ 0.07
SDC3-201ENST00000336798 ANO2Q9NQ90 1003 aa15.51■□□□□ 0.07
SDC3-201ENST00000336798 DIAPH3Q9NSV4 1193 aa15.51■□□□□ 0.07
SDC3-201ENST00000336798 FYB1O15117 783 aa15.51■□□□□ 0.07
SDC3-201ENST00000336798 SETQ01105 290 aaPredicted RBP15.51■□□□□ 0.07
SDC3-201ENST00000336798 C9orf78Q9NZ63 289 aaPredicted RBP15.51■□□□□ 0.07
SDC3-201ENST00000336798 RAB3GAP2Q9H2M9 1393 aa15.51■□□□□ 0.07
SDC3-201ENST00000336798 TEFQ10587 303 aa15.51■□□□□ 0.07
SDC3-201ENST00000336798 AMOTL1Q8IY63 956 aa15.51■□□□□ 0.07
SDC3-201ENST00000336798 MTMR7Q9Y216 660 aa15.5■□□□□ 0.07
SDC3-201ENST00000336798 ANKRD30AQ9BXX3 1397 aa15.5■□□□□ 0.07
SDC3-201ENST00000336798 L3MBTL2Q969R5 705 aa15.5■□□□□ 0.07
SDC3-201ENST00000336798 COG3Q96JB2 828 aa15.5■□□□□ 0.07
SDC3-201ENST00000336798 PANK3Q9H999 370 aa15.49■□□□□ 0.07
SDC3-201ENST00000336798 CARMIL2Q6F5E8 1435 aa15.49■□□□□ 0.07
SDC3-201ENST00000336798 MINK1Q8N4C8 1332 aaPredicted RBP15.49■□□□□ 0.07
SDC3-201ENST00000336798 PHF23Q9BUL5 403 aaPredicted RBP15.49■□□□□ 0.07
SDC3-201ENST00000336798 TRIM29Q14134 588 aa15.49■□□□□ 0.07
SDC3-201ENST00000336798 CALRP27797 417 aaKnown RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms