RNA–Protein interactions for RNA: ENST00000334859.8

LRCH3-201, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LRCH3, Length 2,258 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-201ENST00000334859 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.26■■□□□ 1.471e-7■■□□□ 14.2
LRCH3-201ENST00000334859 IRX6P78412 446 aaPredicted RBP24.25■■□□□ 1.47
LRCH3-201ENST00000334859 PLXNC1O60486 1568 aa24.25■■□□□ 1.47
LRCH3-201ENST00000334859 ZBED9Q6R2W3 1325 aa24.24■■□□□ 1.47
LRCH3-201ENST00000334859 ROCK2O75116 1388 aaKnown RBP24.23■■□□□ 1.47
LRCH3-201ENST00000334859 ZCCHC11Q5TAX3 1644 aaKnown RBP24.22■■□□□ 1.47
LRCH3-201ENST00000334859 ST20-MTHFSA0A0A6YYL1 179 aa24.21■■□□□ 1.47
LRCH3-201ENST00000334859 IQGAP3Q86VI3 1631 aa24.18■■□□□ 1.46
LRCH3-201ENST00000334859 CLASP1Q7Z460 1538 aa24.17■■□□□ 1.46
LRCH3-201ENST00000334859 DUOX2Q9NRD8 1548 aa24.17■■□□□ 1.46
LRCH3-201ENST00000334859 RGL3Q3MIN7 710 aa24.17■■□□□ 1.46
LRCH3-201ENST00000334859 PRAG1Q86YV5 1406 aa24.16■■□□□ 1.46
LRCH3-201ENST00000334859 PLCH2O75038 1416 aa24.15■■□□□ 1.46
LRCH3-201ENST00000334859 PLA2R1Q13018 1463 aa24.15■■□□□ 1.46
LRCH3-201ENST00000334859 TRPM1Q7Z4N2 1603 aa24.15■■□□□ 1.46
LRCH3-201ENST00000334859 EFCAB2Q5VUJ9 269 aa24.13■■□□□ 1.45
LRCH3-201ENST00000334859 ERBINQ96RT1 1412 aa24.12■■□□□ 1.45
LRCH3-201ENST00000334859 UHRF1BP1LA0JNW5 1464 aa24.12■■□□□ 1.45
LRCH3-201ENST00000334859 ABCC1P33527 1531 aa24.12■■□□□ 1.45
LRCH3-201ENST00000334859 A2MP01023 1474 aa24.11■■□□□ 1.45
LRCH3-201ENST00000334859 MAGI2Q86UL8 1455 aa24.1■■□□□ 1.45
LRCH3-201ENST00000334859 E9PCH4 1651 aa24.07■■□□□ 1.44
LRCH3-201ENST00000334859 TRAPPC8Q9Y2L5 1435 aa24.07■■□□□ 1.44
LRCH3-201ENST00000334859 TMC1Q8TDI8 760 aa24.07■■□□□ 1.44
LRCH3-201ENST00000334859 NBPF1Q3BBV0 1214 aa24.06■■□□□ 1.44
LRCH3-201ENST00000334859 ERICH6BQ5W0A0 696 aa24.05■■□□□ 1.44
LRCH3-201ENST00000334859 MYT1Q01538 1121 aa24.05■■□□□ 1.44
LRCH3-201ENST00000334859 GPRASP1Q5JY77 1395 aa24.02■■□□□ 1.44
LRCH3-201ENST00000334859 EIF2AK4Q9P2K8 1649 aaKnown RBP24.02■■□□□ 1.44
LRCH3-201ENST00000334859 ATP10AO60312 1499 aa24.02■■□□□ 1.44
LRCH3-201ENST00000334859 SPAG9O60271 1321 aaKnown RBP24■■□□□ 1.43
LRCH3-201ENST00000334859 PNISRQ8TF01 805 aaKnown RBP24■■□□□ 1.43
LRCH3-201ENST00000334859 PPP4R2Q9NY27 417 aa24■■□□□ 1.43
LRCH3-201ENST00000334859 RBM19Q9Y4C8 960 aaKnown RBP24■■□□□ 1.43
LRCH3-201ENST00000334859 LAMC1P11047 1609 aa24■■□□□ 1.43
LRCH3-201ENST00000334859 KTN1Q86UP2 1357 aaKnown RBP24■■□□□ 1.43
LRCH3-201ENST00000334859 MYBBP1AQ9BQG0 1328 aaKnown RBP24■■□□□ 1.43
LRCH3-201ENST00000334859 PRDM15P57071 1507 aaPredicted RBP24■■□□□ 1.43
LRCH3-201ENST00000334859 SMG6Q86US8 1419 aaKnown RBP23.99■■□□□ 1.43
LRCH3-201ENST00000334859 RALBP1Q15311 655 aa23.99■■□□□ 1.43
LRCH3-201ENST00000334859 ZFYVE16Q7Z3T8 1539 aa23.98■■□□□ 1.43
LRCH3-201ENST00000334859 SENP3-EIF4A1A0A087X0R7 540 aa23.98■■□□□ 1.43
LRCH3-201ENST00000334859 BRD4O60885 1362 aaPredicted RBP23.97■■□□□ 1.43
LRCH3-201ENST00000334859 COL17A1Q9UMD9 1497 aaPredicted RBP23.96■■□□□ 1.43
LRCH3-201ENST00000334859 AFAP1Q8N556 730 aa23.96■■□□□ 1.43
LRCH3-201ENST00000334859 ARAP3Q8WWN8 1544 aa23.96■■□□□ 1.43
LRCH3-201ENST00000334859 NUDCQ9Y266 331 aa23.94■■□□□ 1.42
LRCH3-201ENST00000334859 WDR7Q9Y4E6 1490 aa23.94■■□□□ 1.42
LRCH3-201ENST00000334859 DISP3Q9P2K9 1392 aa23.93■■□□□ 1.42
LRCH3-201ENST00000334859 RTEL1-TNFRSF6BF6WH68 1400 aa23.92■■□□□ 1.42
LRCH3-201ENST00000334859 LRPPRCP42704 1394 aaKnown RBP23.91■■□□□ 1.42
LRCH3-201ENST00000334859 RNF17Q9BXT8 1623 aaKnown RBP23.9■■□□□ 1.42
LRCH3-201ENST00000334859 TESK2Q96S53 571 aa23.9■■□□□ 1.42
LRCH3-201ENST00000334859 B4GALNT3Q6L9W6 998 aa23.89■■□□□ 1.42
LRCH3-201ENST00000334859 PARD3Q8TEW0 1356 aa23.89■■□□□ 1.41
LRCH3-201ENST00000334859 FANCAO15360 1455 aa23.89■■□□□ 1.41
LRCH3-201ENST00000334859 TRPM2O94759 1503 aa23.88■■□□□ 1.41
LRCH3-201ENST00000334859 NLRP13Q86W25 1043 aa23.87■■□□□ 1.41
LRCH3-201ENST00000334859 ATP7AQ04656 1500 aa23.87■■□□□ 1.41
LRCH3-201ENST00000334859 SPHKAPQ2M3C7 1700 aa23.86■■□□□ 1.41
LRCH3-201ENST00000334859 ABCA9Q8IUA7 1624 aa23.86■■□□□ 1.41
LRCH3-201ENST00000334859 DEPDC5O75140 1603 aa23.86■■□□□ 1.41
LRCH3-201ENST00000334859 TMF1P82094 1093 aa23.86■■□□□ 1.41
LRCH3-201ENST00000334859 MYT1LQ9UL68 1186 aa23.86■■□□□ 1.41
LRCH3-201ENST00000334859 MADDQ8WXG6 1647 aa23.85■■□□□ 1.41
LRCH3-201ENST00000334859 INO80Q9ULG1 1556 aaPredicted RBP23.85■■□□□ 1.41
LRCH3-201ENST00000334859 PER1O15534 1290 aaPredicted RBP23.84■■□□□ 1.41
LRCH3-201ENST00000334859 CEP152O94986 1710 aa23.84■■□□□ 1.41
LRCH3-201ENST00000334859 TET3O43151 1660 aa23.83■■□□□ 1.4
LRCH3-201ENST00000334859 CC2D1BQ5T0F9 858 aaKnown RBP23.82■■□□□ 1.4
LRCH3-201ENST00000334859 ADGRL1O94910 1474 aa23.82■■□□□ 1.4
LRCH3-201ENST00000334859 CLTCL1P53675 1640 aa23.82■■□□□ 1.4
LRCH3-201ENST00000334859 KANK1Q14678 1352 aa23.82■■□□□ 1.4
LRCH3-201ENST00000334859 PANK3Q9H999 370 aa23.81■■□□□ 1.4
LRCH3-201ENST00000334859 PTPRTO14522 1441 aa23.79■■□□□ 1.4
LRCH3-201ENST00000334859 KIF3BO15066 747 aa23.79■■□□□ 1.4
LRCH3-201ENST00000334859 SCAPERQ9BY12 1400 aa23.78■■□□□ 1.4
LRCH3-201ENST00000334859 WASHC2CQ9Y4E1 1318 aa23.78■■□□□ 1.4
LRCH3-201ENST00000334859 IQGAP1P46940 1657 aa23.78■■□□□ 1.4
LRCH3-201ENST00000334859 RNF123Q5XPI4 1314 aa23.78■■□□□ 1.4
LRCH3-201ENST00000334859 ANP32EQ9BTT0 268 aa23.77■■□□□ 1.4
LRCH3-201ENST00000334859 ASXL2Q76L83 1435 aa23.76■■□□□ 1.39
LRCH3-201ENST00000334859 SALL2Q9Y467 1007 aaPredicted RBP23.75■■□□□ 1.39
LRCH3-201ENST00000334859 VWDEQ8N2E2 1590 aa23.75■■□□□ 1.39
LRCH3-201ENST00000334859 SCAF11Q99590 1463 aaKnown RBP23.72■■□□□ 1.39
LRCH3-201ENST00000334859 STAC3Q96MF2 364 aa23.7■■□□□ 1.38
LRCH3-201ENST00000334859 MROH1Q8NDA8 1641 aa23.7■■□□□ 1.38
LRCH3-201ENST00000334859 CCDC136Q96JN2 1154 aa23.69■■□□□ 1.38
LRCH3-201ENST00000334859 UGGT1Q9NYU2 1555 aa23.68■■□□□ 1.38
LRCH3-201ENST00000334859 KNSTRNQ9Y448 316 aa23.66■■□□□ 1.38
LRCH3-201ENST00000334859 EIF3AQ14152 1382 aaKnown RBP23.66■■□□□ 1.38
LRCH3-201ENST00000334859 CDCA8Q53HL2 280 aa23.65■■□□□ 1.38
LRCH3-201ENST00000334859 FANCIQ9NVI1 1328 aa23.65■■□□□ 1.38
LRCH3-201ENST00000334859 KIDINS220Q9ULH0 1771 aa23.65■■□□□ 1.38
LRCH3-201ENST00000334859 EFCAB6Q5THR3 1501 aa23.64■■□□□ 1.38
LRCH3-201ENST00000334859 SYNMO15061 1565 aa23.64■■□□□ 1.38
LRCH3-201ENST00000334859 BLMP54132 1417 aaPredicted RBP23.64■■□□□ 1.37
LRCH3-201ENST00000334859 PDE3BQ13370 1112 aa23.63■■□□□ 1.37
LRCH3-201ENST00000334859 ZNF518AQ6AHZ1 1483 aa23.63■■□□□ 1.37
LRCH3-201ENST00000334859 RCAN3Q9UKA8 241 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms