RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 HDGFL2Q7Z4V5 671 aaPredicted RBP9.78□□□□□ -0.84
CIITA-201ENST00000324288 NUTM2FA1L443 756 aa9.78□□□□□ -0.84
CIITA-201ENST00000324288 HTATSF1O43719 755 aaKnown RBP9.77□□□□□ -0.84
CIITA-201ENST00000324288 IL27Q8NEV9 243 aa9.77□□□□□ -0.84
CIITA-201ENST00000324288 RAD21O60216 631 aa9.77□□□□□ -0.84
CIITA-201ENST00000324288 R3HCC1Q9Y3T6 440 aaKnown RBP9.77□□□□□ -0.84
CIITA-201ENST00000324288 PLIN1O60240 522 aa9.77□□□□□ -0.85
CIITA-201ENST00000324288 RRP7AQ9Y3A4 280 aaKnown RBP9.77□□□□□ -0.85
CIITA-201ENST00000324288 FRAT2O75474 233 aaPredicted RBP9.77□□□□□ -0.85
CIITA-201ENST00000324288 STK31Q9BXU1 1019 aa9.77□□□□□ -0.85
CIITA-201ENST00000324288 RBM10P98175 930 aaKnown RBP9.76□□□□□ -0.85
CIITA-201ENST00000324288 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.76□□□□□ -0.85
CIITA-201ENST00000324288 TPD52L1Q16890 204 aaPredicted RBP9.76□□□□□ -0.85
CIITA-201ENST00000324288 MCTP1Q6DN14 999 aa9.76□□□□□ -0.85
CIITA-201ENST00000324288 DDX49Q9Y6V7 483 aaKnown RBP9.76□□□□□ -0.85
CIITA-201ENST00000324288 CSPP1Q1MSJ5 1256 aa9.76□□□□□ -0.85
CIITA-201ENST00000324288 DHX37Q8IY37 1157 aaKnown RBP9.76□□□□□ -0.85
CIITA-201ENST00000324288 CEP89Q96ST8 783 aa9.76□□□□□ -0.85
CIITA-201ENST00000324288 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.75□□□□□ -0.85
CIITA-201ENST00000324288 RRP12Q5JTH9 1297 aaKnown RBP9.75□□□□□ -0.85
CIITA-201ENST00000324288 APPP05067 770 aa9.75□□□□□ -0.85
CIITA-201ENST00000324288 KIF16BQ96L93 1317 aa9.75□□□□□ -0.85
CIITA-201ENST00000324288 PDE4AP27815 886 aa9.74□□□□□ -0.85
CIITA-201ENST00000324288 TEX35Q5T0J7 233 aa9.74□□□□□ -0.85
CIITA-201ENST00000324288 H3BQV1 296 aa9.74□□□□□ -0.85
CIITA-201ENST00000324288 IFFO2Q5TF58 517 aa9.74□□□□□ -0.85
CIITA-201ENST00000324288 CRBNQ96SW2 442 aa9.74□□□□□ -0.85
CIITA-201ENST00000324288 PLCD4Q9BRC7 762 aa9.74□□□□□ -0.85
CIITA-201ENST00000324288 PKD2Q13563 968 aa9.73□□□□□ -0.85
CIITA-201ENST00000324288 RILPL2Q969X0 211 aa9.73□□□□□ -0.85
CIITA-201ENST00000324288 GOLGA6L19H0YKK7 550 aa9.73□□□□□ -0.85
CIITA-201ENST00000324288 MPNDQ8N594 471 aa9.73□□□□□ -0.85
CIITA-201ENST00000324288 SPAG9O60271 1321 aaKnown RBP9.73□□□□□ -0.85
CIITA-201ENST00000324288 FAM43AQ8N2R8 423 aa9.73□□□□□ -0.85
CIITA-201ENST00000324288 GTF2E1P29083 439 aaPredicted RBP9.73□□□□□ -0.85
CIITA-201ENST00000324288 NGEFQ8N5V2 710 aa9.73□□□□□ -0.85
CIITA-201ENST00000324288 ST18O60284 1047 aa9.72□□□□□ -0.85
CIITA-201ENST00000324288 EXOC6Q8TAG9 804 aa9.72□□□□□ -0.85
CIITA-201ENST00000324288 PMFBP1Q8TBY8 1022 aa9.72□□□□□ -0.85
CIITA-201ENST00000324288 BCL2L13Q9BXK5 485 aa9.72□□□□□ -0.85
CIITA-201ENST00000324288 PCMTD1Q96MG8 357 aaPredicted RBP9.72□□□□□ -0.85
CIITA-201ENST00000324288 BECN2A8MW95 431 aa9.72□□□□□ -0.85
CIITA-201ENST00000324288 HOMER1Q86YM7 354 aa9.72□□□□□ -0.85
CIITA-201ENST00000324288 KIF27Q86VH2 1401 aa9.71□□□□□ -0.85
CIITA-201ENST00000324288 CCDC34Q96HJ3 373 aa9.71□□□□□ -0.85
CIITA-201ENST00000324288 CFAP44Q96MT7 982 aa9.71□□□□□ -0.86
CIITA-201ENST00000324288 TTLL5Q6EMB2 1281 aa9.7□□□□□ -0.86
CIITA-201ENST00000324288 GPS2Q13227 327 aa9.7□□□□□ -0.86
CIITA-201ENST00000324288 CNKSR2Q8WXI2 1034 aa9.7□□□□□ -0.86
CIITA-201ENST00000324288 HMMRO75330 724 aa9.7□□□□□ -0.86
CIITA-201ENST00000324288 WRNQ14191 1432 aaPredicted RBP eCLIP9.7□□□□□ -0.86
CIITA-201ENST00000324288 SKIDA1Q1XH10 827 aa9.69□□□□□ -0.86
CIITA-201ENST00000324288 SAMD1Q6SPF0 538 aaPredicted RBP9.69□□□□□ -0.86
CIITA-201ENST00000324288 HSP90AB3PQ58FF7 597 aa9.69□□□□□ -0.86
CIITA-201ENST00000324288 TCEAL9Q9UHQ7 104 aa9.69□□□□□ -0.86
CIITA-201ENST00000324288 TSR1Q2NL82 804 aaKnown RBP9.69□□□□□ -0.86
CIITA-201ENST00000324288 IFT57Q9NWB7 429 aa9.69□□□□□ -0.86
CIITA-201ENST00000324288 CENPJQ9HC77 1338 aaPredicted RBP9.69□□□□□ -0.86
CIITA-201ENST00000324288 ELL2O00472 640 aaPredicted RBP9.69□□□□□ -0.86
CIITA-201ENST00000324288 MSH5O43196 834 aa9.69□□□□□ -0.86
CIITA-201ENST00000324288 NECTIN2Q92692 538 aa9.69□□□□□ -0.86
CIITA-201ENST00000324288 HDGFP51858 240 aaKnown RBP9.68□□□□□ -0.86
CIITA-201ENST00000324288 RNF214Q8ND24 703 aa9.68□□□□□ -0.86
CIITA-201ENST00000324288 CEP164Q9UPV0 1460 aa9.68□□□□□ -0.86
CIITA-201ENST00000324288 TPM1P09493 284 aa9.68□□□□□ -0.86
CIITA-201ENST00000324288 MAP7D2Q96T17 732 aa9.68□□□□□ -0.86
CIITA-201ENST00000324288 ANKRD45Q5TZF3 282 aa9.68□□□□□ -0.86
CIITA-201ENST00000324288 MNS1Q8NEH6 495 aa9.68□□□□□ -0.86
CIITA-201ENST00000324288 AMPHP49418 695 aa9.67□□□□□ -0.86
CIITA-201ENST00000324288 KDM4AO75164 1064 aa9.67□□□□□ -0.86
CIITA-201ENST00000324288 CCDC70Q6NSX1 233 aa9.67□□□□□ -0.86
CIITA-201ENST00000324288 FAM184AQ8NB25 1140 aa9.67□□□□□ -0.86
CIITA-201ENST00000324288 NOM1Q5C9Z4 860 aaKnown RBP9.67□□□□□ -0.86
CIITA-201ENST00000324288 AK7Q96M32 723 aa9.67□□□□□ -0.86
CIITA-201ENST00000324288 AKAP17AQ02040 695 aaKnown RBP9.67□□□□□ -0.86
CIITA-201ENST00000324288 ARHGAP35Q9NRY4 1499 aa9.67□□□□□ -0.86
CIITA-201ENST00000324288 NAP1L1P55209 391 aaKnown RBP9.67□□□□□ -0.86
CIITA-201ENST00000324288 NGDNQ8NEJ9 315 aaKnown RBP9.66□□□□□ -0.86
CIITA-201ENST00000324288 KRI1Q8N9T8 703 aaKnown RBP9.66□□□□□ -0.86
CIITA-201ENST00000324288 NASPP49321 788 aaPredicted RBP9.66□□□□□ -0.86
CIITA-201ENST00000324288 FAM161AQ3B820 660 aa9.66□□□□□ -0.86
CIITA-201ENST00000324288 FANCIQ9NVI1 1328 aa9.66□□□□□ -0.86
CIITA-201ENST00000324288 SETD5Q9C0A6 1442 aa9.66□□□□□ -0.86
CIITA-201ENST00000324288 EEA1Q15075 1411 aa9.65□□□□□ -0.86
CIITA-201ENST00000324288 DHX16O60231 1041 aaKnown RBP9.65□□□□□ -0.86
CIITA-201ENST00000324288 PRDM10Q9NQV6 1147 aa9.65□□□□□ -0.86
CIITA-201ENST00000324288 TSPYL1Q9H0U9 437 aa9.65□□□□□ -0.86
CIITA-201ENST00000324288 ANO2Q9NQ90 1003 aa9.65□□□□□ -0.87
CIITA-201ENST00000324288 TRIM34Q9BYJ4 488 aa9.64□□□□□ -0.87
CIITA-201ENST00000324288 RALBP1Q15311 655 aa9.64□□□□□ -0.87
CIITA-201ENST00000324288 RUFY1Q96T51 708 aa9.64□□□□□ -0.87
CIITA-201ENST00000324288 KLHL34Q8N239 644 aa9.64□□□□□ -0.87
CIITA-201ENST00000324288 PDILTQ8N807 584 aa9.64□□□□□ -0.87
CIITA-201ENST00000324288 IBSPP21815 317 aaPredicted RBP9.64□□□□□ -0.87
CIITA-201ENST00000324288 SKOR2Q2VWA4 1001 aaPredicted RBP9.64□□□□□ -0.87
CIITA-201ENST00000324288 ERICH4A6NGS2 130 aa9.63□□□□□ -0.87
CIITA-201ENST00000324288 TPM2P07951 284 aa9.63□□□□□ -0.87
CIITA-201ENST00000324288 NUP155O75694 1391 aa9.63□□□□□ -0.87
CIITA-201ENST00000324288 EIF3AQ14152 1382 aaKnown RBP9.63□□□□□ -0.87
CIITA-201ENST00000324288 EIF2S2P20042 333 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms