RNA–Protein interactions for RNA: ENST00000324106.8

CD28-201, Transcript of CD28 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD28, Length 4,812 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-201ENST00000324106 TEFQ10587 303 aa11.33□□□□□ -0.6
CD28-201ENST00000324106 PPP4R2Q9NY27 417 aa11.33□□□□□ -0.6
CD28-201ENST00000324106 CHMP3Q9Y3E7 222 aa11.33□□□□□ -0.6
CD28-201ENST00000324106 CGNL1Q0VF96 1302 aa11.33□□□□□ -0.6
CD28-201ENST00000324106 NLRP13Q86W25 1043 aa11.33□□□□□ -0.6
CD28-201ENST00000324106 PHLDB1Q86UU1 1377 aa11.33□□□□□ -0.6
CD28-201ENST00000324106 AQRO60306 1485 aaKnown RBP eCLIP11.32□□□□□ -0.6
CD28-201ENST00000324106 IFT140Q96RY7 1462 aa11.32□□□□□ -0.6
CD28-201ENST00000324106 FRAT2O75474 233 aaPredicted RBP11.31□□□□□ -0.6
CD28-201ENST00000324106 MSH5O43196 834 aa11.31□□□□□ -0.6
CD28-201ENST00000324106 RAD54L2Q9Y4B4 1467 aa11.31□□□□□ -0.6
CD28-201ENST00000324106 TTC5Q8N0Z6 440 aa11.3□□□□□ -0.6
CD28-201ENST00000324106 THEMISQ8N1K5 641 aaPredicted RBP11.3□□□□□ -0.6
CD28-201ENST00000324106 POGZQ7Z3K3 1410 aa11.3□□□□□ -0.6
CD28-201ENST00000324106 SYNJ2O15056 1496 aa11.3□□□□□ -0.6
CD28-201ENST00000324106 GOLGA6L6A8MZA4 724 aa11.3□□□□□ -0.6
CD28-201ENST00000324106 HSP90AB1P08238 724 aaKnown RBP11.3□□□□□ -0.6
CD28-201ENST00000324106 DHX57Q6P158 1386 aaKnown RBP11.3□□□□□ -0.6
CD28-201ENST00000324106 RWDD1Q9H446 243 aaPredicted RBP11.29□□□□□ -0.6
CD28-201ENST00000324106 TAOK2Q9UL54 1235 aa11.29□□□□□ -0.6
CD28-201ENST00000324106 TRIM44Q96DX7 344 aaPredicted RBP11.29□□□□□ -0.6
CD28-201ENST00000324106 CFTRP13569 1480 aa11.29□□□□□ -0.6
CD28-201ENST00000324106 WASHC2AQ641Q2 1341 aa11.29□□□□□ -0.6
CD28-201ENST00000324106 MINK1Q8N4C8 1332 aaPredicted RBP11.29□□□□□ -0.6
CD28-201ENST00000324106 GNL2Q13823 731 aaKnown RBP11.29□□□□□ -0.6
CD28-201ENST00000324106 KIF15Q9NS87 1388 aa11.28□□□□□ -0.6
CD28-201ENST00000324106 PRG4Q92954 1404 aaPredicted RBP11.28□□□□□ -0.6
CD28-201ENST00000324106 SMC4Q9NTJ3 1288 aa11.27□□□□□ -0.61
CD28-201ENST00000324106 PTMAP06454 111 aaKnown RBP11.27□□□□□ -0.61
CD28-201ENST00000324106 ITPRIPQ8IWB1 547 aa11.27□□□□□ -0.61
CD28-201ENST00000324106 PHF23Q9BUL5 403 aaPredicted RBP11.27□□□□□ -0.61
CD28-201ENST00000324106 NEXNQ0ZGT2 675 aa11.26□□□□□ -0.61
CD28-201ENST00000324106 RAPGEF4Q8WZA2 1011 aa11.26□□□□□ -0.61
CD28-201ENST00000324106 CCDC34Q96HJ3 373 aa11.26□□□□□ -0.61
CD28-201ENST00000324106 HMGB2P26583 209 aaKnown RBP11.26□□□□□ -0.61
CD28-201ENST00000324106 PDE3BQ13370 1112 aa11.25□□□□□ -0.61
CD28-201ENST00000324106 PROSER2Q86WR7 435 aaPredicted RBP11.25□□□□□ -0.61
CD28-201ENST00000324106 HSCBQ8IWL3 235 aa11.25□□□□□ -0.61
CD28-201ENST00000324106 TXNDC2Q86VQ3 553 aa11.25□□□□□ -0.61
CD28-201ENST00000324106 GPRASP1Q5JY77 1395 aa11.25□□□□□ -0.61
CD28-201ENST00000324106 HTATSF1O43719 755 aaKnown RBP11.24□□□□□ -0.61
CD28-201ENST00000324106 CLSTN1O94985 981 aa11.24□□□□□ -0.61
CD28-201ENST00000324106 LRRFIP1Q32MZ4 808 aaKnown RBP11.24□□□□□ -0.61
CD28-201ENST00000324106 NGEFQ8N5V2 710 aa11.24□□□□□ -0.61
CD28-201ENST00000324106 APBB1O00213 710 aa11.24□□□□□ -0.61
CD28-201ENST00000324106 SLC4A10Q6U841 1118 aa11.24□□□□□ -0.61
CD28-201ENST00000324106 ST20-MTHFSA0A0A6YYL1 179 aa11.24□□□□□ -0.61
CD28-201ENST00000324106 CENPJQ9HC77 1338 aaPredicted RBP11.23□□□□□ -0.61
CD28-201ENST00000324106 PLEKHH2Q8IVE3 1493 aa11.23□□□□□ -0.61
CD28-201ENST00000324106 PMFBP1Q8TBY8 1022 aa11.23□□□□□ -0.61
CD28-201ENST00000324106 MIA2Q96PC5 1412 aa11.23□□□□□ -0.61
CD28-201ENST00000324106 DDX58O95786 925 aaKnown RBP11.22□□□□□ -0.61
CD28-201ENST00000324106 SF3B2Q13435 895 aaKnown RBP11.22□□□□□ -0.61
CD28-201ENST00000324106 SYTL4Q96C24 671 aaPredicted RBP11.22□□□□□ -0.61
CD28-201ENST00000324106 RCAN3Q9UKA8 241 aa11.22□□□□□ -0.61
CD28-201ENST00000324106 NBR1Q14596 966 aa11.21□□□□□ -0.61
CD28-201ENST00000324106 CHMP4CQ96CF2 233 aa11.21□□□□□ -0.61
CD28-201ENST00000324106 NOL10Q9BSC4 688 aaKnown RBP11.21□□□□□ -0.61
CD28-201ENST00000324106 SLC52A1Q9NWF4 448 aa11.21□□□□□ -0.61
CD28-201ENST00000324106 CUX1P39880 1505 aa11.21□□□□□ -0.61
CD28-201ENST00000324106 ANKLE2Q86XL3 938 aa11.21□□□□□ -0.61
CD28-201ENST00000324106 AFAP1Q8N556 730 aa11.21□□□□□ -0.61
CD28-201ENST00000324106 PANK3Q9H999 370 aa11.2□□□□□ -0.62
CD28-201ENST00000324106 KIF3AQ9Y496 699 aa11.2□□□□□ -0.62
CD28-201ENST00000324106 ARHGAP5Q13017 1502 aa11.2□□□□□ -0.62
CD28-201ENST00000324106 DIAPH1O60610 1272 aaKnown RBP11.2□□□□□ -0.62
CD28-201ENST00000324106 L1TD1Q5T7N2 865 aaKnown RBP11.2□□□□□ -0.62
CD28-201ENST00000324106 ERICH6BQ5W0A0 696 aa11.2□□□□□ -0.62
CD28-201ENST00000324106 HSP90B1P14625 803 aaKnown RBP11.19□□□□□ -0.62
CD28-201ENST00000324106 AMOTL1Q8IY63 956 aa11.19□□□□□ -0.62
CD28-201ENST00000324106 ANKRD50Q9ULJ7 1429 aa11.19□□□□□ -0.62
CD28-201ENST00000324106 NLRP2Q9NX02 1062 aa11.19□□□□□ -0.62
CD28-201ENST00000324106 TPRNQ4KMQ1 711 aa11.18□□□□□ -0.62
CD28-201ENST00000324106 ANO8Q9HCE9 1232 aaPredicted RBP11.18□□□□□ -0.62
CD28-201ENST00000324106 MYBBP1AQ9BQG0 1328 aaKnown RBP11.18□□□□□ -0.62
CD28-201ENST00000324106 DNAJC5Q9H3Z4 198 aa11.18□□□□□ -0.62
CD28-201ENST00000324106 DNMBPQ6XZF7 1577 aa11.18□□□□□ -0.62
CD28-201ENST00000324106 NLRP6P59044 892 aa11.17□□□□□ -0.62
CD28-201ENST00000324106 CHAF1AQ13111 956 aaPredicted RBP11.17□□□□□ -0.62
CD28-201ENST00000324106 TRIM6-TRIM34B2RNG4 842 aa11.17□□□□□ -0.62
CD28-201ENST00000324106 TRIM34Q9BYJ4 488 aa11.16□□□□□ -0.62
CD28-201ENST00000324106 TOMM22Q9NS69 142 aa11.16□□□□□ -0.62
CD28-201ENST00000324106 PLCB2Q00722 1185 aa11.16□□□□□ -0.62
CD28-201ENST00000324106 FYCO1Q9BQS8 1478 aa11.16□□□□□ -0.62
CD28-201ENST00000324106 FGD6Q6ZV73 1430 aa11.16□□□□□ -0.62
CD28-201ENST00000324106 RRBP1Q9P2E9 1410 aaKnown RBP11.16□□□□□ -0.62
CD28-201ENST00000324106 CASKIN1Q8WXD9 1431 aa11.15□□□□□ -0.62
CD28-201ENST00000324106 C9orf78Q9NZ63 289 aaPredicted RBP11.15□□□□□ -0.62
CD28-201ENST00000324106 USP47Q96K76 1375 aa11.15□□□□□ -0.62
CD28-201ENST00000324106 WWC1Q8IX03 1113 aa11.15□□□□□ -0.62
CD28-201ENST00000324106 ESCO1Q5FWF5 840 aa11.14□□□□□ -0.63
CD28-201ENST00000324106 CCDC146Q8IYE0 955 aa11.14□□□□□ -0.63
CD28-201ENST00000324106 B4GALNT3Q6L9W6 998 aa11.14□□□□□ -0.63
CD28-201ENST00000324106 CTDP1Q9Y5B0 961 aaPredicted RBP11.14□□□□□ -0.63
CD28-201ENST00000324106 VPS37DQ86XT2 251 aa11.13□□□□□ -0.63
CD28-201ENST00000324106 TOPBP1Q92547 1522 aa11.13□□□□□ -0.63
CD28-201ENST00000324106 E9PSI1 815 aa11.13□□□□□ -0.63
CD28-201ENST00000324106 DNTTIP2Q5QJE6 756 aaKnown RBP11.13□□□□□ -0.63
CD28-201ENST00000324106 NESP48681 1621 aa11.13□□□□□ -0.63
CD28-201ENST00000324106 RUSC2Q8N2Y8 1516 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms