RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 DAPK1P53355 1430 aa18.83■□□□□ 0.6
TCOF1-201ENST00000323668 PNNQ9H307 717 aaKnown RBP18.83■□□□□ 0.6
TCOF1-201ENST00000323668 ANKRD30BQ9BXX2 1392 aa18.82■□□□□ 0.6
TCOF1-201ENST00000323668 SLKQ9H2G2 1235 aaPredicted RBP18.82■□□□□ 0.6
TCOF1-201ENST00000323668 PMFBP1Q8TBY8 1022 aa18.82■□□□□ 0.6
TCOF1-201ENST00000323668 MSH5O43196 834 aa18.82■□□□□ 0.6
TCOF1-201ENST00000323668 ROCK1Q13464 1354 aa18.82■□□□□ 0.6
TCOF1-201ENST00000323668 EPRSP07814 1512 aaKnown RBP18.8■□□□□ 0.6
TCOF1-201ENST00000323668 L1TD1Q5T7N2 865 aaKnown RBP18.8■□□□□ 0.6
TCOF1-201ENST00000323668 SLC4A3P48751 1232 aa18.8■□□□□ 0.6
TCOF1-201ENST00000323668 CDCA7LQ96GN5 454 aa18.8■□□□□ 0.6
TCOF1-201ENST00000323668 SRPK2P78362 688 aaKnown RBP18.8■□□□□ 0.6
TCOF1-201ENST00000323668 PRDM2Q13029 1718 aa18.8■□□□□ 0.6
TCOF1-201ENST00000323668 GGT6Q6P531 493 aa18.79■□□□□ 0.6
TCOF1-201ENST00000323668 HSCBQ8IWL3 235 aa18.79■□□□□ 0.6
TCOF1-201ENST00000323668 APAF1O14727 1248 aa18.79■□□□□ 0.6
TCOF1-201ENST00000323668 HECW1Q76N89 1606 aa18.79■□□□□ 0.6
TCOF1-201ENST00000323668 E9PSI1 815 aa18.79■□□□□ 0.6
TCOF1-201ENST00000323668 SAFB2Q14151 953 aaKnown RBP eCLIP18.79■□□□□ 0.6
TCOF1-201ENST00000323668 PAK3O75914 559 aaPredicted RBP18.78■□□□□ 0.6
TCOF1-201ENST00000323668 SPRYD3Q8NCJ5 442 aa18.78■□□□□ 0.6
TCOF1-201ENST00000323668 HSP90AB1P08238 724 aaKnown RBP18.77■□□□□ 0.6
TCOF1-201ENST00000323668 NCOA1Q15788 1441 aa18.77■□□□□ 0.6
TCOF1-201ENST00000323668 CLUAP1Q96AJ1 413 aa18.77■□□□□ 0.6
TCOF1-201ENST00000323668 PTPN23Q9H3S7 1636 aa18.77■□□□□ 0.59
TCOF1-201ENST00000323668 CC2D2AQ9P2K1 1620 aa18.77■□□□□ 0.59
TCOF1-201ENST00000323668 TROQ12816 1431 aaPredicted RBP18.76■□□□□ 0.59
TCOF1-201ENST00000323668 PTPRKQ15262 1439 aa18.76■□□□□ 0.59
TCOF1-201ENST00000323668 WASHC2CQ9Y4E1 1318 aa18.76■□□□□ 0.59
TCOF1-201ENST00000323668 PRG4Q92954 1404 aaPredicted RBP18.76■□□□□ 0.59
TCOF1-201ENST00000323668 IPO8O15397 1037 aaKnown RBP18.75■□□□□ 0.59
TCOF1-201ENST00000323668 CGNL1Q0VF96 1302 aa18.75■□□□□ 0.59
TCOF1-201ENST00000323668 CUL7Q14999 1698 aa18.75■□□□□ 0.59
TCOF1-201ENST00000323668 CDK13Q14004 1512 aaKnown RBP18.75■□□□□ 0.59
TCOF1-201ENST00000323668 NBPF1Q3BBV0 1214 aa18.74■□□□□ 0.59
TCOF1-201ENST00000323668 ADAMTS8Q9UP79 889 aa18.74■□□□□ 0.59
TCOF1-201ENST00000323668 NCLP19338 710 aaKnown RBP18.74■□□□□ 0.59
TCOF1-201ENST00000323668 GSE1Q14687 1217 aa18.74■□□□□ 0.59
TCOF1-201ENST00000323668 NGEFQ8N5V2 710 aa18.73■□□□□ 0.59
TCOF1-201ENST00000323668 CASC1Q6TDU7 716 aa18.72■□□□□ 0.59
TCOF1-201ENST00000323668 ITPRIPQ8IWB1 547 aa18.71■□□□□ 0.59
TCOF1-201ENST00000323668 STK26Q9P289 416 aa18.71■□□□□ 0.59
TCOF1-201ENST00000323668 RRP7AQ9Y3A4 280 aaKnown RBP18.71■□□□□ 0.59
TCOF1-201ENST00000323668 COG6Q9Y2V7 657 aa18.71■□□□□ 0.59
TCOF1-201ENST00000323668 STAC3Q96MF2 364 aa18.7■□□□□ 0.58
TCOF1-201ENST00000323668 SMC4Q9NTJ3 1288 aa18.7■□□□□ 0.58
TCOF1-201ENST00000323668 TRAK1Q9UPV9 953 aa18.7■□□□□ 0.58
TCOF1-201ENST00000323668 ABCC5O15440 1437 aa18.7■□□□□ 0.58
TCOF1-201ENST00000323668 C9orf84Q5VXU9 1444 aa18.7■□□□□ 0.58
TCOF1-201ENST00000323668 RPRD2Q5VT52 1461 aaKnown RBP18.69■□□□□ 0.58
TCOF1-201ENST00000323668 NAP1L5Q96NT1 182 aaPredicted RBP18.69■□□□□ 0.58
TCOF1-201ENST00000323668 BACH2Q9BYV9 841 aa18.68■□□□□ 0.58
TCOF1-201ENST00000323668 MFAP1P55081 439 aaKnown RBP18.66■□□□□ 0.58
TCOF1-201ENST00000323668 BCL2L13Q9BXK5 485 aa18.66■□□□□ 0.58
TCOF1-201ENST00000323668 HDGFL2Q7Z4V5 671 aaPredicted RBP18.66■□□□□ 0.58
TCOF1-201ENST00000323668 GZF1Q9H116 711 aaPredicted RBP18.65■□□□□ 0.58
TCOF1-201ENST00000323668 PPP2R1AP30153 589 aa18.64■□□□□ 0.57
TCOF1-201ENST00000323668 IQGAP2Q13576 1575 aa18.63■□□□□ 0.57
TCOF1-201ENST00000323668 KIAA0586Q9BVV6 1533 aa18.63■□□□□ 0.57
TCOF1-201ENST00000323668 PLPPR3Q6T4P5 718 aa18.62■□□□□ 0.57
TCOF1-201ENST00000323668 NFKBIBQ15653 356 aa18.62■□□□□ 0.57
TCOF1-201ENST00000323668 TERF2IPQ9NYB0 399 aa18.61■□□□□ 0.57
TCOF1-201ENST00000323668 CALD1Q05682 793 aaKnown RBP18.6■□□□□ 0.57
TCOF1-201ENST00000323668 GBP4Q96PP9 640 aa18.6■□□□□ 0.57
TCOF1-201ENST00000323668 IFT140Q96RY7 1462 aa18.6■□□□□ 0.57
TCOF1-201ENST00000323668 ZKSCAN2Q63HK3 967 aa18.6■□□□□ 0.57
TCOF1-201ENST00000323668 GOLGA6L3A6NEY3 463 aa18.59■□□□□ 0.57
TCOF1-201ENST00000323668 CFAP44Q96MT7 982 aa18.59■□□□□ 0.57
TCOF1-201ENST00000323668 MRC2Q9UBG0 1479 aa18.59■□□□□ 0.57
TCOF1-201ENST00000323668 HAP1P54257 671 aaPredicted RBP18.59■□□□□ 0.57
TCOF1-201ENST00000323668 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.58■□□□□ 0.57
TCOF1-201ENST00000323668 NUTM2DQ5VT03 806 aaPredicted RBP18.57■□□□□ 0.56
TCOF1-201ENST00000323668 SYNJ2O15056 1496 aa18.57■□□□□ 0.56
TCOF1-201ENST00000323668 URB2Q14146 1524 aaKnown RBP18.56■□□□□ 0.56
TCOF1-201ENST00000323668 RUNDC1Q96C34 613 aa18.56■□□□□ 0.56
TCOF1-201ENST00000323668 UGGT2Q9NYU1 1516 aa18.56■□□□□ 0.56
TCOF1-201ENST00000323668 LAMC3Q9Y6N6 1575 aa18.56■□□□□ 0.56
TCOF1-201ENST00000323668 PTMAP06454 111 aaKnown RBP18.55■□□□□ 0.56
TCOF1-201ENST00000323668 CAMSAP2Q08AD1 1489 aa18.55■□□□□ 0.56
TCOF1-201ENST00000323668 PANK1Q8TE04 598 aa18.55■□□□□ 0.56
TCOF1-201ENST00000323668 SNAPC4Q5SXM2 1469 aa18.54■□□□□ 0.56
TCOF1-201ENST00000323668 THOC2Q8NI27 1593 aaKnown RBP18.54■□□□□ 0.56
TCOF1-201ENST00000323668 ERBINQ96RT1 1412 aa18.53■□□□□ 0.56
TCOF1-201ENST00000323668 CFAP43Q8NDM7 1665 aa18.53■□□□□ 0.56
TCOF1-201ENST00000323668 EVC2Q86UK5 1308 aa18.53■□□□□ 0.56
TCOF1-201ENST00000323668 PTMSP20962 102 aa18.53■□□□□ 0.56
TCOF1-201ENST00000323668 AAMPQ13685 434 aa18.53■□□□□ 0.56
TCOF1-201ENST00000323668 CFAP70Q5T0N1 1121 aa18.51■□□□□ 0.55
TCOF1-201ENST00000323668 VGFO15240 615 aaPredicted RBP18.51■□□□□ 0.55
TCOF1-201ENST00000323668 DZIP1LQ8IYY4 767 aaKnown RBP18.51■□□□□ 0.55
TCOF1-201ENST00000323668 C14orf37Q86TY3 774 aa18.51■□□□□ 0.55
TCOF1-201ENST00000323668 ARHGAP5Q13017 1502 aa18.5■□□□□ 0.55
TCOF1-201ENST00000323668 PDE3AQ14432 1141 aa18.5■□□□□ 0.55
TCOF1-201ENST00000323668 AFAP1Q8N556 730 aa18.5■□□□□ 0.55
TCOF1-201ENST00000323668 APBB1O00213 710 aa18.49■□□□□ 0.55
TCOF1-201ENST00000323668 DDX19BQ9UMR2 479 aa18.49■□□□□ 0.55
TCOF1-201ENST00000323668 BCAR3O75815 825 aa18.49■□□□□ 0.55
TCOF1-201ENST00000323668 TCP11L2Q8N4U5 519 aa18.48■□□□□ 0.55
TCOF1-201ENST00000323668 PLB1Q6P1J6 1458 aa18.48■□□□□ 0.55
TCOF1-201ENST00000323668 DNAJC5BQ9UF47 199 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms