RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 RCAN3Q9UKA8 241 aa17.95■□□□□ 0.46
SKA3-202ENST00000314759 SHANK2Q9UPX8 1470 aa17.93■□□□□ 0.46
SKA3-202ENST00000314759 NPM2Q86SE8 214 aaKnown RBP17.93■□□□□ 0.46
SKA3-202ENST00000314759 E9PCH4 1651 aa17.93■□□□□ 0.46
SKA3-202ENST00000314759 KDM5DQ9BY66 1539 aa17.93■□□□□ 0.46
SKA3-202ENST00000314759 CEP170Q5SW79 1584 aa17.92■□□□□ 0.46
SKA3-202ENST00000314759 CDC42BPAQ5VT25 1732 aa17.92■□□□□ 0.46
SKA3-202ENST00000314759 RTN4Q9NQC3 1192 aaKnown RBP17.92■□□□□ 0.46
SKA3-202ENST00000314759 NLRP13Q86W25 1043 aa17.92■□□□□ 0.46
SKA3-202ENST00000314759 PLEKHD1A6NEE1 506 aa17.91■□□□□ 0.46
SKA3-202ENST00000314759 TSPY4P0CV99 314 aa17.91■□□□□ 0.46
SKA3-202ENST00000314759 TSPY10P0CW01 314 aa17.91■□□□□ 0.46
SKA3-202ENST00000314759 EIF4G3O43432 1585 aaKnown RBP17.91■□□□□ 0.46
SKA3-202ENST00000314759 PTPRGP23470 1445 aa17.91■□□□□ 0.46
SKA3-202ENST00000314759 PARD3Q8TEW0 1356 aa17.9■□□□□ 0.46
SKA3-202ENST00000314759 ABCC10Q5T3U5 1492 aa17.9■□□□□ 0.46
SKA3-202ENST00000314759 TCERG1O14776 1098 aaKnown RBP17.9■□□□□ 0.46
SKA3-202ENST00000314759 CHMP7Q8WUX9 453 aaPredicted RBP17.9■□□□□ 0.46
SKA3-202ENST00000314759 PDE3BQ13370 1112 aa17.88■□□□□ 0.45
SKA3-202ENST00000314759 LAS1LQ9Y4W2 734 aaKnown RBP17.88■□□□□ 0.45
SKA3-202ENST00000314759 PER1O15534 1290 aaPredicted RBP17.88■□□□□ 0.45
SKA3-202ENST00000314759 HNRNPMP52272 730 aaKnown RBP eCLIP17.88■□□□□ 0.45
SKA3-202ENST00000314759 JPH4Q96JJ6 628 aa17.88■□□□□ 0.45
SKA3-202ENST00000314759 CARMIL2Q6F5E8 1435 aa17.87■□□□□ 0.45
SKA3-202ENST00000314759 CDCA7LQ96GN5 454 aa17.87■□□□□ 0.45
SKA3-202ENST00000314759 MAGI1Q96QZ7 1491 aaPredicted RBP17.87■□□□□ 0.45
SKA3-202ENST00000314759 PDE4AP27815 886 aa17.87■□□□□ 0.45
SKA3-202ENST00000314759 FBLN2P98095 1184 aa17.85■□□□□ 0.45
SKA3-202ENST00000314759 ATP10BO94823 1461 aa17.85■□□□□ 0.45
SKA3-202ENST00000314759 PRAG1Q86YV5 1406 aa17.85■□□□□ 0.45
SKA3-202ENST00000314759 NBPF1Q3BBV0 1214 aa17.85■□□□□ 0.45
SKA3-202ENST00000314759 BACH2Q9BYV9 841 aa17.84■□□□□ 0.45
SKA3-202ENST00000314759 SYNJ2O15056 1496 aa17.83■□□□□ 0.45
SKA3-202ENST00000314759 NEFMP07197 916 aa17.83■□□□□ 0.45
SKA3-202ENST00000314759 ABCA8O94911 1581 aa17.82■□□□□ 0.44
SKA3-202ENST00000314759 MS4A1P11836 297 aa17.82■□□□□ 0.44
SKA3-202ENST00000314759 FAM135AQ9P2D6 1515 aa17.82■□□□□ 0.44
SKA3-202ENST00000314759 TRPM1Q7Z4N2 1603 aa17.82■□□□□ 0.44
SKA3-202ENST00000314759 PLIN1O60240 522 aa17.81■□□□□ 0.44
SKA3-202ENST00000314759 RGL3Q3MIN7 710 aa17.81■□□□□ 0.44
SKA3-202ENST00000314759 CC2D1BQ5T0F9 858 aaKnown RBP17.8■□□□□ 0.44
SKA3-202ENST00000314759 CCDC144AA2RUR9 1427 aa17.8■□□□□ 0.44
SKA3-202ENST00000314759 ARHGEF5Q12774 1597 aa17.79■□□□□ 0.44
SKA3-202ENST00000314759 NUP160Q12769 1436 aa17.79■□□□□ 0.44
SKA3-202ENST00000314759 GPRASP1Q5JY77 1395 aa17.78■□□□□ 0.44
SKA3-202ENST00000314759 TESK2Q96S53 571 aa17.78■□□□□ 0.44
SKA3-202ENST00000314759 WASHC2CQ9Y4E1 1318 aa17.78■□□□□ 0.44
SKA3-202ENST00000314759 DISP3Q9P2K9 1392 aa17.78■□□□□ 0.44
SKA3-202ENST00000314759 COL17A1Q9UMD9 1497 aaPredicted RBP17.77■□□□□ 0.44
SKA3-202ENST00000314759 BLMP54132 1417 aaPredicted RBP17.77■□□□□ 0.44
SKA3-202ENST00000314759 PANK3Q9H999 370 aa17.76■□□□□ 0.43
SKA3-202ENST00000314759 PLA2R1Q13018 1463 aa17.76■□□□□ 0.43
SKA3-202ENST00000314759 ERCC6Q03468 1493 aa17.76■□□□□ 0.43
SKA3-202ENST00000314759 INSRP06213 1382 aa17.76■□□□□ 0.43
SKA3-202ENST00000314759 SKAP1Q86WV1 359 aa17.75■□□□□ 0.43
SKA3-202ENST00000314759 CRBNQ96SW2 442 aa17.75■□□□□ 0.43
SKA3-202ENST00000314759 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.75■□□□□ 0.43
SKA3-202ENST00000314759 CCDC141Q6ZP82 1450 aa17.75■□□□□ 0.43
SKA3-202ENST00000314759 A2MP01023 1474 aa17.75■□□□□ 0.43
SKA3-202ENST00000314759 ZMYM4Q5VZL5 1548 aa17.73■□□□□ 0.43
SKA3-202ENST00000314759 SAMD9LQ8IVG5 1584 aa17.72■□□□□ 0.43
SKA3-202ENST00000314759 PRDM15P57071 1507 aaPredicted RBP17.72■□□□□ 0.43
SKA3-202ENST00000314759 USP35Q9P2H5 1018 aa17.72■□□□□ 0.43
SKA3-202ENST00000314759 ERBINQ96RT1 1412 aa17.71■□□□□ 0.43
SKA3-202ENST00000314759 RSPH4AQ5TD94 716 aa17.71■□□□□ 0.43
SKA3-202ENST00000314759 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.71■□□□□ 0.439e-6■■■□□ 18.9
SKA3-202ENST00000314759 C20orf194Q5TEA3 1177 aa17.7■□□□□ 0.42
SKA3-202ENST00000314759 LAMC1P11047 1609 aa17.69■□□□□ 0.42
SKA3-202ENST00000314759 TMF1P82094 1093 aa17.69■□□□□ 0.42
SKA3-202ENST00000314759 CDC42BPBQ9Y5S2 1711 aa17.69■□□□□ 0.42
SKA3-202ENST00000314759 ADAMTS8Q9UP79 889 aa17.68■□□□□ 0.42
SKA3-202ENST00000314759 BRPF3Q9ULD4 1205 aa17.68■□□□□ 0.42
SKA3-202ENST00000314759 PLEKHH2Q8IVE3 1493 aa17.68■□□□□ 0.42
SKA3-202ENST00000314759 PPM1GO15355 546 aaPredicted RBP17.66■□□□□ 0.42
SKA3-202ENST00000314759 PREX2Q70Z35 1606 aa17.66■□□□□ 0.42
SKA3-202ENST00000314759 UNC13BO14795 1591 aa17.66■□□□□ 0.42
SKA3-202ENST00000314759 KDM2BQ8NHM5 1336 aa17.65■□□□□ 0.42
SKA3-202ENST00000314759 SYCP2Q9BX26 1530 aa17.64■□□□□ 0.41
SKA3-202ENST00000314759 SLC4A3P48751 1232 aa17.64■□□□□ 0.41
SKA3-202ENST00000314759 DDRGK1Q96HY6 314 aa17.63■□□□□ 0.41
SKA3-202ENST00000314759 DUSP27Q5VZP5 1158 aa17.63■□□□□ 0.41
SKA3-202ENST00000314759 PLEKHH1Q9ULM0 1364 aa17.63■□□□□ 0.41
SKA3-202ENST00000314759 MYO5CQ9NQX4 1742 aa17.63■□□□□ 0.41
SKA3-202ENST00000314759 EIF2AK4Q9P2K8 1649 aaKnown RBP17.62■□□□□ 0.41
SKA3-202ENST00000314759 MAGI2Q86UL8 1455 aa17.61■□□□□ 0.41
SKA3-202ENST00000314759 PPP2R1AP30153 589 aa17.61■□□□□ 0.41
SKA3-202ENST00000314759 MAST1Q9Y2H9 1570 aa17.61■□□□□ 0.41
SKA3-202ENST00000314759 WDR7Q9Y4E6 1490 aa17.6■□□□□ 0.41
SKA3-202ENST00000314759 IQGAP3Q86VI3 1631 aa17.6■□□□□ 0.41
SKA3-202ENST00000314759 GSE1Q14687 1217 aa17.6■□□□□ 0.41
SKA3-202ENST00000314759 ATP10AO60312 1499 aa17.6■□□□□ 0.41
SKA3-202ENST00000314759 CENPQQ7L2Z9 268 aaPredicted RBP17.6■□□□□ 0.41
SKA3-202ENST00000314759 KNSTRNQ9Y448 316 aa17.59■□□□□ 0.41
SKA3-202ENST00000314759 ZNF521Q96K83 1311 aa17.59■□□□□ 0.41
SKA3-202ENST00000314759 NFKBIBQ15653 356 aa17.59■□□□□ 0.41
SKA3-202ENST00000314759 WDR43Q15061 677 aaKnown RBP eCLIP17.58■□□□□ 0.41
SKA3-202ENST00000314759 ARHGAP5Q13017 1502 aa17.58■□□□□ 0.4
SKA3-202ENST00000314759 AMER1Q5JTC6 1135 aaPredicted RBP17.58■□□□□ 0.4
SKA3-202ENST00000314759 GOLGA2Q08379 1002 aa17.57■□□□□ 0.4
SKA3-202ENST00000314759 TTC37Q6PGP7 1564 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms