RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CENPQQ7L2Z9 268 aaPredicted RBP17.09■□□□□ 0.33
CSPG4-201ENST00000308508 SOX12O15370 315 aa17.08■□□□□ 0.33
CSPG4-201ENST00000308508 ROCK2O75116 1388 aaKnown RBP17.08■□□□□ 0.33
CSPG4-201ENST00000308508 ACBD3Q9H3P7 528 aa17.08■□□□□ 0.32
CSPG4-201ENST00000308508 FOXD4L5Q5VV16 416 aaPredicted RBP17.08■□□□□ 0.32
CSPG4-201ENST00000308508 FOXD4L4Q8WXT5 416 aaPredicted RBP17.08■□□□□ 0.32
CSPG4-201ENST00000308508 AK7Q96M32 723 aa17.08■□□□□ 0.32
CSPG4-201ENST00000308508 ARGLU1Q9NWB6 273 aaPredicted RBP17.08■□□□□ 0.32
CSPG4-201ENST00000308508 EIF3AQ14152 1382 aaKnown RBP17.07■□□□□ 0.32
CSPG4-201ENST00000308508 CDR1P51861 262 aa17.07■□□□□ 0.32
CSPG4-201ENST00000308508 FAM184AQ8NB25 1140 aa17.06■□□□□ 0.32
CSPG4-201ENST00000308508 TAF7LQ5H9L4 462 aa17.06■□□□□ 0.32
CSPG4-201ENST00000308508 FAM43AQ8N2R8 423 aa17.06■□□□□ 0.32
CSPG4-201ENST00000308508 MAP7D2Q96T17 732 aa17.06■□□□□ 0.32
CSPG4-201ENST00000308508 RUFY1Q96T51 708 aa17.05■□□□□ 0.32
CSPG4-201ENST00000308508 CHMP3Q9Y3E7 222 aa17.05■□□□□ 0.32
CSPG4-201ENST00000308508 TMX4Q9H1E5 349 aaPredicted RBP17.05■□□□□ 0.32
CSPG4-201ENST00000308508 CWC15Q9P013 229 aaKnown RBP17.05■□□□□ 0.32
CSPG4-201ENST00000308508 HOMER1Q86YM7 354 aa17.05■□□□□ 0.32
CSPG4-201ENST00000308508 MARCH6O60337 910 aa17.04■□□□□ 0.32
CSPG4-201ENST00000308508 ANKRD20A12PQ8NF67 263 aa17.04■□□□□ 0.32
CSPG4-201ENST00000308508 WRNQ14191 1432 aaPredicted RBP eCLIP17.04■□□□□ 0.32
CSPG4-201ENST00000308508 ARHGAP35Q9NRY4 1499 aa17.04■□□□□ 0.32
CSPG4-201ENST00000308508 FANCIQ9NVI1 1328 aa17.03■□□□□ 0.32
CSPG4-201ENST00000308508 PDE4AP27815 886 aa17.02■□□□□ 0.32
CSPG4-201ENST00000308508 HOOK1Q9UJC3 728 aaKnown RBP17.02■□□□□ 0.32
CSPG4-201ENST00000308508 APPP05067 770 aa17.02■□□□□ 0.31
CSPG4-201ENST00000308508 LMOD3Q0VAK6 560 aa17.02■□□□□ 0.31
CSPG4-201ENST00000308508 HSP90B2PQ58FF3 399 aa17.01■□□□□ 0.31
CSPG4-201ENST00000308508 CCDC66A2RUB6 948 aa16.99■□□□□ 0.31
CSPG4-201ENST00000308508 VPS53Q5VIR6 699 aa16.99■□□□□ 0.31
CSPG4-201ENST00000308508 AKAP17AQ02040 695 aaKnown RBP16.99■□□□□ 0.31
CSPG4-201ENST00000308508 SLC4A10Q6U841 1118 aa16.99■□□□□ 0.31
CSPG4-201ENST00000308508 CCDC191Q8NCU4 936 aa16.99■□□□□ 0.31
CSPG4-201ENST00000308508 DIAPH3Q9NSV4 1193 aa16.99■□□□□ 0.31
CSPG4-201ENST00000308508 CLUAP1Q96AJ1 413 aa16.98■□□□□ 0.31
CSPG4-201ENST00000308508 DCTN1Q14203 1278 aa16.97■□□□□ 0.31
CSPG4-201ENST00000308508 NLRP13Q86W25 1043 aa16.97■□□□□ 0.31
CSPG4-201ENST00000308508 TOMM22Q9NS69 142 aa16.97■□□□□ 0.31
CSPG4-201ENST00000308508 SAFB2Q14151 953 aaKnown RBP eCLIP16.97■□□□□ 0.31
CSPG4-201ENST00000308508 RDXP35241 583 aaKnown RBP16.97■□□□□ 0.31
CSPG4-201ENST00000308508 PCMTD1Q96MG8 357 aaPredicted RBP16.97■□□□□ 0.31
CSPG4-201ENST00000308508 ZNF330Q9Y3S2 320 aaPredicted RBP16.97■□□□□ 0.31
CSPG4-201ENST00000308508 MNS1Q8NEH6 495 aa16.96■□□□□ 0.31
CSPG4-201ENST00000308508 REC8O95072 547 aa16.96■□□□□ 0.31
CSPG4-201ENST00000308508 MCTP1Q6DN14 999 aa16.95■□□□□ 0.3
CSPG4-201ENST00000308508 CCDC47Q96A33 483 aaKnown RBP16.95■□□□□ 0.3
CSPG4-201ENST00000308508 RILPL2Q969X0 211 aa16.95■□□□□ 0.3
CSPG4-201ENST00000308508 FOXD4L6Q3SYB3 417 aaPredicted RBP16.94■□□□□ 0.3
CSPG4-201ENST00000308508 FOXD4L3Q6VB84 417 aaPredicted RBP16.94■□□□□ 0.3
CSPG4-201ENST00000308508 LRRFIP1Q32MZ4 808 aaKnown RBP16.94■□□□□ 0.3
CSPG4-201ENST00000308508 H0YHG0 523 aa16.94■□□□□ 0.3
CSPG4-201ENST00000308508 CHMP5Q9NZZ3 219 aa16.94■□□□□ 0.3
CSPG4-201ENST00000308508 CPLX2Q6PUV4 134 aaKnown RBP16.93■□□□□ 0.3
CSPG4-201ENST00000308508 IFT57Q9NWB7 429 aa16.93■□□□□ 0.3
CSPG4-201ENST00000308508 TRIM29Q14134 588 aa16.93■□□□□ 0.3
CSPG4-201ENST00000308508 SYNE3Q6ZMZ3 975 aa16.93■□□□□ 0.3
CSPG4-201ENST00000308508 KIF15Q9NS87 1388 aa16.93■□□□□ 0.3
CSPG4-201ENST00000308508 ANKRD45Q5TZF3 282 aa16.93■□□□□ 0.3
CSPG4-201ENST00000308508 SLC4A3P48751 1232 aa16.92■□□□□ 0.3
CSPG4-201ENST00000308508 CCDC39Q9UFE4 941 aa16.92■□□□□ 0.3
CSPG4-201ENST00000308508 SASS6Q6UVJ0 657 aa16.92■□□□□ 0.3
CSPG4-201ENST00000308508 RUFY2Q8WXA3 655 aa16.92■□□□□ 0.3
CSPG4-201ENST00000308508 ERCC4Q92889 916 aaPredicted RBP16.91■□□□□ 0.3
CSPG4-201ENST00000308508 TERF2IPQ9NYB0 399 aa16.91■□□□□ 0.3
CSPG4-201ENST00000308508 CCDC146Q8IYE0 955 aa16.9■□□□□ 0.3
CSPG4-201ENST00000308508 STK26Q9P289 416 aa16.9■□□□□ 0.3
CSPG4-201ENST00000308508 NUCB2P80303 420 aa16.9■□□□□ 0.3
CSPG4-201ENST00000308508 PKD2Q13563 968 aa16.9■□□□□ 0.3
CSPG4-201ENST00000308508 PAK3O75914 559 aaPredicted RBP16.9■□□□□ 0.3
CSPG4-201ENST00000308508 BICD2Q8TD16 824 aa16.9■□□□□ 0.3
CSPG4-201ENST00000308508 ZKSCAN1P17029 563 aaPredicted RBP16.9■□□□□ 0.3
CSPG4-201ENST00000308508 CGNL1Q0VF96 1302 aa16.89■□□□□ 0.29
CSPG4-201ENST00000308508 CSB-PGBD3P0DP91 1061 aa16.88■□□□□ 0.29
CSPG4-201ENST00000308508 G3V3G9 751 aa16.88■□□□□ 0.29
CSPG4-201ENST00000308508 DCAF8Q5TAQ9 597 aa16.88■□□□□ 0.29
CSPG4-201ENST00000308508 PKNOX2Q96KN3 472 aa16.88■□□□□ 0.29
CSPG4-201ENST00000308508 NAT10Q9H0A0 1025 aaKnown RBP16.88■□□□□ 0.29
CSPG4-201ENST00000308508 FRAT2O75474 233 aaPredicted RBP16.88■□□□□ 0.29
CSPG4-201ENST00000308508 RRP1P56182 461 aaKnown RBP16.88■□□□□ 0.29
CSPG4-201ENST00000308508 ANO8Q9HCE9 1232 aaPredicted RBP16.87■□□□□ 0.29
CSPG4-201ENST00000308508 EIF4G1Q04637 1599 aaKnown RBP16.87■□□□□ 0.29
CSPG4-201ENST00000308508 NASPP49321 788 aaPredicted RBP16.87■□□□□ 0.29
CSPG4-201ENST00000308508 MRE11P49959 708 aa16.87■□□□□ 0.29
CSPG4-201ENST00000308508 MYBBP1AQ9BQG0 1328 aaKnown RBP16.87■□□□□ 0.29
CSPG4-201ENST00000308508 MYO6Q9UM54 1294 aa16.86■□□□□ 0.29
CSPG4-201ENST00000308508 TCEAL9Q9UHQ7 104 aa16.86■□□□□ 0.29
CSPG4-201ENST00000308508 ZBED9Q6R2W3 1325 aa16.86■□□□□ 0.29
CSPG4-201ENST00000308508 CCDC173Q0VFZ6 552 aa16.86■□□□□ 0.29
CSPG4-201ENST00000308508 RAB3GAP2Q9H2M9 1393 aa16.86■□□□□ 0.29
CSPG4-201ENST00000308508 ZKSCAN2Q63HK3 967 aa16.85■□□□□ 0.29
CSPG4-201ENST00000308508 R3HCC1Q9Y3T6 440 aaKnown RBP16.85■□□□□ 0.29
CSPG4-201ENST00000308508 NAP1L1P55209 391 aaKnown RBP16.85■□□□□ 0.29
CSPG4-201ENST00000308508 E9PSI1 815 aa16.85■□□□□ 0.29
CSPG4-201ENST00000308508 LEKR1Q6ZMV7 388 aa16.85■□□□□ 0.29
CSPG4-201ENST00000308508 RNF20Q5VTR2 975 aa16.84■□□□□ 0.29
CSPG4-201ENST00000308508 VPS8Q8N3P4 1428 aa16.84■□□□□ 0.29
CSPG4-201ENST00000308508 RB1CC1Q8TDY2 1594 aa16.83■□□□□ 0.29
CSPG4-201ENST00000308508 CPLX1O14810 134 aa16.83■□□□□ 0.29
CSPG4-201ENST00000308508 FBXO3Q9UK99 471 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms