RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 RRP7AQ9Y3A4 280 aaKnown RBP21.66■■□□□ 1.06
SHANK1-201ENST00000293441 CCDC144AA2RUR9 1427 aa21.66■■□□□ 1.06
SHANK1-201ENST00000293441 CENPJQ9HC77 1338 aaPredicted RBP21.65■■□□□ 1.06
SHANK1-201ENST00000293441 AMER1Q5JTC6 1135 aaPredicted RBP21.64■■□□□ 1.05
SHANK1-201ENST00000293441 SLKQ9H2G2 1235 aaPredicted RBP21.63■■□□□ 1.05
SHANK1-201ENST00000293441 FANCD2Q9BXW9 1451 aa21.62■■□□□ 1.05
SHANK1-201ENST00000293441 NOL8Q76FK4 1167 aaKnown RBP21.62■■□□□ 1.05
SHANK1-201ENST00000293441 GBP4Q96PP9 640 aa21.62■■□□□ 1.05
SHANK1-201ENST00000293441 PTPRGP23470 1445 aa21.62■■□□□ 1.05
SHANK1-201ENST00000293441 L1TD1Q5T7N2 865 aaKnown RBP21.62■■□□□ 1.05
SHANK1-201ENST00000293441 C1orf141Q5JVX7 400 aa21.62■■□□□ 1.05
SHANK1-201ENST00000293441 NLRP13Q86W25 1043 aa21.62■■□□□ 1.05
SHANK1-201ENST00000293441 COG3Q96JB2 828 aa21.62■■□□□ 1.05
SHANK1-201ENST00000293441 TOMM22Q9NS69 142 aa21.61■■□□□ 1.05
SHANK1-201ENST00000293441 PANK3Q9H999 370 aa21.61■■□□□ 1.05
SHANK1-201ENST00000293441 HTATSF1O43719 755 aaKnown RBP21.6■■□□□ 1.05
SHANK1-201ENST00000293441 UACAQ9BZF9 1416 aa21.6■■□□□ 1.05
SHANK1-201ENST00000293441 KIAA2012Q0VF49 1180 aa21.6■■□□□ 1.05
SHANK1-201ENST00000293441 GZF1Q9H116 711 aaPredicted RBP21.6■■□□□ 1.05
SHANK1-201ENST00000293441 MINK1Q8N4C8 1332 aaPredicted RBP21.59■■□□□ 1.05
SHANK1-201ENST00000293441 ST20-MTHFSA0A0A6YYL1 179 aa21.59■■□□□ 1.05
SHANK1-201ENST00000293441 VGFO15240 615 aaPredicted RBP21.58■■□□□ 1.05
SHANK1-201ENST00000293441 MSH5O43196 834 aa21.58■■□□□ 1.05
SHANK1-201ENST00000293441 ELL2O00472 640 aaPredicted RBP21.58■■□□□ 1.04
SHANK1-201ENST00000293441 ATAD2BQ9ULI0 1458 aa21.57■■□□□ 1.04
SHANK1-201ENST00000293441 KIF15Q9NS87 1388 aa21.57■■□□□ 1.04
SHANK1-201ENST00000293441 OSCARQ8IYS5 282 aa21.57■■□□□ 1.04
SHANK1-201ENST00000293441 EVC2Q86UK5 1308 aa21.57■■□□□ 1.04
SHANK1-201ENST00000293441 FOXD4L1Q9NU39 408 aa21.56■■□□□ 1.04
SHANK1-201ENST00000293441 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.56■■□□□ 1.04
SHANK1-201ENST00000293441 RASSF8Q8NHQ8 419 aa21.55■■□□□ 1.04
SHANK1-201ENST00000293441 NGEFQ8N5V2 710 aa21.55■■□□□ 1.04
SHANK1-201ENST00000293441 TCERG1O14776 1098 aaKnown RBP21.55■■□□□ 1.04
SHANK1-201ENST00000293441 RBM19Q9Y4C8 960 aaKnown RBP21.55■■□□□ 1.04
SHANK1-201ENST00000293441 SMARCA4P51532 1647 aa21.54■■□□□ 1.04
SHANK1-201ENST00000293441 PTMSP20962 102 aa21.53■■□□□ 1.04
SHANK1-201ENST00000293441 CGNL1Q0VF96 1302 aa21.53■■□□□ 1.04
SHANK1-201ENST00000293441 PHLDB1Q86UU1 1377 aa21.52■■□□□ 1.04
SHANK1-201ENST00000293441 VPS53Q5VIR6 699 aa21.52■■□□□ 1.04
SHANK1-201ENST00000293441 MEX3CQ5U5Q3 659 aaKnown RBP21.51■■□□□ 1.03
SHANK1-201ENST00000293441 MYBBP1AQ9BQG0 1328 aaKnown RBP21.51■■□□□ 1.03
SHANK1-201ENST00000293441 BCL2L13Q9BXK5 485 aa21.51■■□□□ 1.03
SHANK1-201ENST00000293441 PRDM2Q13029 1718 aa21.51■■□□□ 1.03
SHANK1-201ENST00000293441 TEFQ10587 303 aa21.5■■□□□ 1.03
SHANK1-201ENST00000293441 TPM4P67936 248 aa21.5■■□□□ 1.03
SHANK1-201ENST00000293441 CREBRFQ8IUR6 639 aa21.5■■□□□ 1.03
SHANK1-201ENST00000293441 SYAP1Q96A49 352 aaPredicted RBP21.5■■□□□ 1.03
SHANK1-201ENST00000293441 PSME1Q06323 249 aa21.49■■□□□ 1.03
SHANK1-201ENST00000293441 RILPL2Q969X0 211 aa21.49■■□□□ 1.03
SHANK1-201ENST00000293441 TTC5Q8N0Z6 440 aa21.49■■□□□ 1.03
SHANK1-201ENST00000293441 EIF2S2P20042 333 aaKnown RBP21.48■■□□□ 1.03
SHANK1-201ENST00000293441 SYTL4Q96C24 671 aaPredicted RBP21.48■■□□□ 1.03
SHANK1-201ENST00000293441 FAM69CQ0P6D2 419 aa21.48■■□□□ 1.03
SHANK1-201ENST00000293441 PDE3BQ13370 1112 aa21.47■■□□□ 1.03
SHANK1-201ENST00000293441 AEBP2Q6ZN18 517 aaPredicted RBP21.47■■□□□ 1.03
SHANK1-201ENST00000293441 MARCH6O60337 910 aa21.47■■□□□ 1.03
SHANK1-201ENST00000293441 CCDC34Q96HJ3 373 aa21.46■■□□□ 1.03
SHANK1-201ENST00000293441 NECTIN2Q92692 538 aa21.45■■□□□ 1.03
SHANK1-201ENST00000293441 FOXD4L5Q5VV16 416 aaPredicted RBP21.45■■□□□ 1.02
SHANK1-201ENST00000293441 FOXD4L4Q8WXT5 416 aaPredicted RBP21.45■■□□□ 1.02
SHANK1-201ENST00000293441 NOC3LQ8WTT2 800 aaKnown RBP21.45■■□□□ 1.02
SHANK1-201ENST00000293441 KIF16BQ96L93 1317 aa21.45■■□□□ 1.02
SHANK1-201ENST00000293441 RUSC2Q8N2Y8 1516 aa21.45■■□□□ 1.02
SHANK1-201ENST00000293441 DEKP35659 375 aaKnown RBP21.44■■□□□ 1.02
SHANK1-201ENST00000293441 PDE4CQ08493 712 aa21.44■■□□□ 1.02
SHANK1-201ENST00000293441 ANKRD45Q5TZF3 282 aa21.43■■□□□ 1.02
SHANK1-201ENST00000293441 CSPP1Q1MSJ5 1256 aa21.43■■□□□ 1.02
SHANK1-201ENST00000293441 ST18O60284 1047 aa21.41■■□□□ 1.02
SHANK1-201ENST00000293441 GAPVD1Q14C86 1478 aa21.41■■□□□ 1.02
SHANK1-201ENST00000293441 USP47Q96K76 1375 aa21.41■■□□□ 1.02
SHANK1-201ENST00000293441 NEXNQ0ZGT2 675 aa21.4■■□□□ 1.02
SHANK1-201ENST00000293441 PLIN1O60240 522 aa21.4■■□□□ 1.02
SHANK1-201ENST00000293441 SF3A1Q15459 793 aaKnown RBP21.39■■□□□ 1.01
SHANK1-201ENST00000293441 C9orf78Q9NZ63 289 aaPredicted RBP21.39■■□□□ 1.01
SHANK1-201ENST00000293441 RAD21O60216 631 aa21.38■■□□□ 1.01
SHANK1-201ENST00000293441 DIAPH1O60610 1272 aaKnown RBP21.38■■□□□ 1.01
SHANK1-201ENST00000293441 PRM3Q9NNZ6 103 aa21.37■■□□□ 1.01
SHANK1-201ENST00000293441 ZKSCAN2Q63HK3 967 aa21.37■■□□□ 1.01
SHANK1-201ENST00000293441 H3BQV1 296 aa21.37■■□□□ 1.01
SHANK1-201ENST00000293441 IFFO2Q5TF58 517 aa21.37■■□□□ 1.01
SHANK1-201ENST00000293441 E9PSI1 815 aa21.36■■□□□ 1.01
SHANK1-201ENST00000293441 FGD5Q6ZNL6 1462 aa21.36■■□□□ 1.01
SHANK1-201ENST00000293441 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.35■■□□□ 1.01
SHANK1-201ENST00000293441 KIF3AQ9Y496 699 aa21.35■■□□□ 1.01
SHANK1-201ENST00000293441 FBXW7Q969H0 707 aa21.35■■□□□ 1.01
SHANK1-201ENST00000293441 RAD54L2Q9Y4B4 1467 aa21.35■■□□□ 1.01
SHANK1-201ENST00000293441 ATF3P18847 181 aa21.35■■□□□ 1.01
SHANK1-201ENST00000293441 NOL10Q9BSC4 688 aaKnown RBP21.35■■□□□ 1.01
SHANK1-201ENST00000293441 TRIM34Q9BYJ4 488 aa21.34■■□□□ 1.01
SHANK1-201ENST00000293441 AKAP17AQ02040 695 aaKnown RBP21.34■■□□□ 1.01
SHANK1-201ENST00000293441 FAM184AQ8NB25 1140 aa21.34■■□□□ 1.01
SHANK1-201ENST00000293441 APAF1O14727 1248 aa21.33■■□□□ 1.01
SHANK1-201ENST00000293441 DHX57Q6P158 1386 aaKnown RBP21.33■■□□□ 1
SHANK1-201ENST00000293441 RIPK4P57078 832 aa21.33■■□□□ 1
SHANK1-201ENST00000293441 NUTM2GQ5VZR2 741 aa21.31■■□□□ 1
SHANK1-201ENST00000293441 VPS37DQ86XT2 251 aa21.31■■□□□ 1
SHANK1-201ENST00000293441 AMOTL1Q8IY63 956 aa21.31■■□□□ 1
SHANK1-201ENST00000293441 ANO8Q9HCE9 1232 aaPredicted RBP21.31■■□□□ 1
SHANK1-201ENST00000293441 COG6Q9Y2V7 657 aa21.31■■□□□ 1
SHANK1-201ENST00000293441 DIAPH3Q9NSV4 1193 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms