RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 EFCAB2Q5VUJ9 269 aa22.37■■□□□ 1.17
VPS54-201ENST00000272322 CCDC141Q6ZP82 1450 aa22.36■■□□□ 1.17
VPS54-201ENST00000272322 PLIN1O60240 522 aa22.34■■□□□ 1.17
VPS54-201ENST00000272322 KIF3BO15066 747 aa22.33■■□□□ 1.17
VPS54-201ENST00000272322 RSPH4AQ5TD94 716 aa22.32■■□□□ 1.16
VPS54-201ENST00000272322 SPAG9O60271 1321 aaKnown RBP22.32■■□□□ 1.16
VPS54-201ENST00000272322 MYBBP1AQ9BQG0 1328 aaKnown RBP22.32■■□□□ 1.16
VPS54-201ENST00000272322 FAM135AQ9P2D6 1515 aa22.3■■□□□ 1.16
VPS54-201ENST00000272322 DISP3Q9P2K9 1392 aa22.3■■□□□ 1.16
VPS54-201ENST00000272322 MYT1Q01538 1121 aa22.29■■□□□ 1.16
VPS54-201ENST00000272322 SAMD9LQ8IVG5 1584 aa22.29■■□□□ 1.16
VPS54-201ENST00000272322 ADGBQ8N7X0 1667 aa22.28■■□□□ 1.16
VPS54-201ENST00000272322 SKAP1Q86WV1 359 aa22.27■■□□□ 1.16
VPS54-201ENST00000272322 RALGAPBQ86X10 1494 aa22.27■■□□□ 1.16
VPS54-201ENST00000272322 KTN1Q86UP2 1357 aaKnown RBP22.26■■□□□ 1.15
VPS54-201ENST00000272322 NUTM2DQ5VT03 806 aaPredicted RBP22.26■■□□□ 1.15
VPS54-201ENST00000272322 RALBP1Q15311 655 aa22.26■■□□□ 1.15
VPS54-201ENST00000272322 EXOC6Q8TAG9 804 aa22.26■■□□□ 1.15
VPS54-201ENST00000272322 TRAPPC8Q9Y2L5 1435 aa22.26■■□□□ 1.15
VPS54-201ENST00000272322 TMF1P82094 1093 aa22.26■■□□□ 1.15
VPS54-201ENST00000272322 NPM2Q86SE8 214 aaKnown RBP22.26■■□□□ 1.15
VPS54-201ENST00000272322 NLRP13Q86W25 1043 aa22.26■■□□□ 1.15
VPS54-201ENST00000272322 PLA2R1Q13018 1463 aa22.25■■□□□ 1.15
VPS54-201ENST00000272322 TESK2Q96S53 571 aa22.25■■□□□ 1.15
VPS54-201ENST00000272322 KDM5CP41229 1560 aa22.24■■□□□ 1.15
VPS54-201ENST00000272322 TTC37Q6PGP7 1564 aa22.24■■□□□ 1.15
VPS54-201ENST00000272322 ARHGEF12Q9NZN5 1544 aa22.23■■□□□ 1.15
VPS54-201ENST00000272322 PER1O15534 1290 aaPredicted RBP22.22■■□□□ 1.15
VPS54-201ENST00000272322 TNNT2P45379 298 aaPredicted RBP22.22■■□□□ 1.15
VPS54-201ENST00000272322 ADCY10Q96PN6 1610 aa22.22■■□□□ 1.15
VPS54-201ENST00000272322 PRAG1Q86YV5 1406 aa22.22■■□□□ 1.15
VPS54-201ENST00000272322 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.21■■□□□ 1.155e-8■■■■■ 28.6
VPS54-201ENST00000272322 UHRF1BP1Q6BDS2 1440 aa22.21■■□□□ 1.15
VPS54-201ENST00000272322 SHANK2Q9UPX8 1470 aa22.21■■□□□ 1.15
VPS54-201ENST00000272322 CROCC2H7BZ55 1655 aa22.21■■□□□ 1.15
VPS54-201ENST00000272322 KNSTRNQ9Y448 316 aa22.21■■□□□ 1.15
VPS54-201ENST00000272322 GGT6Q6P531 493 aa22.2■■□□□ 1.14
VPS54-201ENST00000272322 RCAN3Q9UKA8 241 aa22.2■■□□□ 1.14
VPS54-201ENST00000272322 ARID4BQ4LE39 1312 aaPredicted RBP22.2■■□□□ 1.14
VPS54-201ENST00000272322 CCDC146Q8IYE0 955 aa22.19■■□□□ 1.14
VPS54-201ENST00000272322 CFAP70Q5T0N1 1121 aa22.19■■□□□ 1.14
VPS54-201ENST00000272322 CDC42BPBQ9Y5S2 1711 aa22.19■■□□□ 1.14
VPS54-201ENST00000272322 A2MP01023 1474 aa22.19■■□□□ 1.14
VPS54-201ENST00000272322 ADAMTS8Q9UP79 889 aa22.18■■□□□ 1.14
VPS54-201ENST00000272322 CHD1O14646 1710 aa22.17■■□□□ 1.14
VPS54-201ENST00000272322 SMG6Q86US8 1419 aaKnown RBP22.17■■□□□ 1.14
VPS54-201ENST00000272322 NBR1Q14596 966 aa22.16■■□□□ 1.14
VPS54-201ENST00000272322 SCAPERQ9BY12 1400 aa22.15■■□□□ 1.14
VPS54-201ENST00000272322 ERICH6BQ5W0A0 696 aa22.14■■□□□ 1.13
VPS54-201ENST00000272322 BRD4O60885 1362 aaPredicted RBP22.13■■□□□ 1.13
VPS54-201ENST00000272322 RRP1P56182 461 aaKnown RBP22.13■■□□□ 1.13
VPS54-201ENST00000272322 WDR43Q15061 677 aaKnown RBP eCLIP22.12■■□□□ 1.133e-6■■■■■ 29.9
VPS54-201ENST00000272322 SAFB2Q14151 953 aaKnown RBP eCLIP22.11■■□□□ 1.131e-7■■■■□ 23.5
VPS54-201ENST00000272322 ERBINQ96RT1 1412 aa22.11■■□□□ 1.13
VPS54-201ENST00000272322 NEUROD2Q15784 382 aa22.1■■□□□ 1.13
VPS54-201ENST00000272322 PLCH2O75038 1416 aa22.09■■□□□ 1.13
VPS54-201ENST00000272322 TRAK1Q9UPV9 953 aa22.08■■□□□ 1.13
VPS54-201ENST00000272322 TMEM132EQ6IEE7 984 aa22.08■■□□□ 1.13
VPS54-201ENST00000272322 PAK3O75914 559 aaPredicted RBP22.07■■□□□ 1.12
VPS54-201ENST00000272322 KDM5DQ9BY66 1539 aa22.07■■□□□ 1.12
VPS54-201ENST00000272322 C20orf194Q5TEA3 1177 aa22.07■■□□□ 1.12
VPS54-201ENST00000272322 ARHGEF5Q12774 1597 aa22.07■■□□□ 1.12
VPS54-201ENST00000272322 PREX2Q70Z35 1606 aa22.06■■□□□ 1.12
VPS54-201ENST00000272322 ADGRF5Q8IZF2 1346 aa22.06■■□□□ 1.12
VPS54-201ENST00000272322 ABCC2Q92887 1545 aa22.06■■□□□ 1.12
VPS54-201ENST00000272322 NPM1P06748 294 aaKnown RBP eCLIP22.04■■□□□ 1.12
VPS54-201ENST00000272322 PPP2R1AP30153 589 aa22.04■■□□□ 1.12
VPS54-201ENST00000272322 PARD3Q8TEW0 1356 aa22.04■■□□□ 1.12
VPS54-201ENST00000272322 LRPPRCP42704 1394 aaKnown RBP22.03■■□□□ 1.12
VPS54-201ENST00000272322 CRBNQ96SW2 442 aa22.03■■□□□ 1.12
VPS54-201ENST00000272322 FANCIQ9NVI1 1328 aa22.02■■□□□ 1.12
VPS54-201ENST00000272322 APAF1O14727 1248 aa21.99■■□□□ 1.11
VPS54-201ENST00000272322 RAPGEF3O95398 923 aa21.99■■□□□ 1.11
VPS54-201ENST00000272322 RRP7AQ9Y3A4 280 aaKnown RBP21.97■■□□□ 1.11
VPS54-201ENST00000272322 KANK1Q14678 1352 aa21.96■■□□□ 1.11
VPS54-201ENST00000272322 AMER1Q5JTC6 1135 aaPredicted RBP21.96■■□□□ 1.11
VPS54-201ENST00000272322 RNF123Q5XPI4 1314 aa21.95■■□□□ 1.1
VPS54-201ENST00000272322 ANP32AP39687 249 aaKnown RBP21.95■■□□□ 1.1
VPS54-201ENST00000272322 DUOX2Q9NRD8 1548 aa21.95■■□□□ 1.1
VPS54-201ENST00000272322 STK26Q9P289 416 aa21.95■■□□□ 1.1
VPS54-201ENST00000272322 UGGT1Q9NYU2 1555 aa21.94■■□□□ 1.1
VPS54-201ENST00000272322 COL17A1Q9UMD9 1497 aaPredicted RBP21.94■■□□□ 1.1
VPS54-201ENST00000272322 SLC12A5Q9H2X9 1139 aa21.94■■□□□ 1.1
VPS54-201ENST00000272322 GPRASP1Q5JY77 1395 aa21.93■■□□□ 1.1
VPS54-201ENST00000272322 POLR1AO95602 1720 aaPredicted RBP21.93■■□□□ 1.1
VPS54-201ENST00000272322 CFAP65Q6ZU64 1925 aaKnown RBP21.93■■□□□ 1.1
VPS54-201ENST00000272322 FANCAO15360 1455 aa21.93■■□□□ 1.1
VPS54-201ENST00000272322 MAGI2Q86UL8 1455 aa21.93■■□□□ 1.1
VPS54-201ENST00000272322 SPINK5Q9NQ38 1064 aaPredicted RBP21.92■■□□□ 1.1
VPS54-201ENST00000272322 NOP58Q9Y2X3 529 aaKnown RBP21.92■■□□□ 1.1
VPS54-201ENST00000272322 MYO5CQ9NQX4 1742 aa21.92■■□□□ 1.1
VPS54-201ENST00000272322 TRPM1Q7Z4N2 1603 aa21.91■■□□□ 1.1
VPS54-201ENST00000272322 CARD14Q9BXL6 1004 aa21.9■■□□□ 1.1
VPS54-201ENST00000272322 ZCCHC11Q5TAX3 1644 aaKnown RBP21.9■■□□□ 1.1
VPS54-201ENST00000272322 WASHC2CQ9Y4E1 1318 aa21.9■■□□□ 1.1
VPS54-201ENST00000272322 CDCA8Q53HL2 280 aa21.89■■□□□ 1.1
VPS54-201ENST00000272322 PLEKHH1Q9ULM0 1364 aa21.89■■□□□ 1.09
VPS54-201ENST00000272322 RGS3P49796 1198 aa21.88■■□□□ 1.09
VPS54-201ENST00000272322 DMRT2Q9Y5R5 561 aa21.88■■□□□ 1.09
VPS54-201ENST00000272322 ADGRL1O94910 1474 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms