RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 KLHL34Q8N239 644 aa14.06□□□□□ -0.16
PTPN4-201ENST00000263708 CT47A1Q5JQC4 288 aaPredicted RBP14.06□□□□□ -0.16
PTPN4-201ENST00000263708 DHX16O60231 1041 aaKnown RBP14.05□□□□□ -0.16
PTPN4-201ENST00000263708 ST18O60284 1047 aa14.05□□□□□ -0.16
PTPN4-201ENST00000263708 SMC4Q9NTJ3 1288 aa14.05□□□□□ -0.16
PTPN4-201ENST00000263708 LTV1Q96GA3 475 aaPredicted RBP14.05□□□□□ -0.16
PTPN4-201ENST00000263708 ERCC6Q03468 1493 aa14.05□□□□□ -0.16
PTPN4-201ENST00000263708 HDAC5Q9UQL6 1122 aa14.04□□□□□ -0.16
PTPN4-201ENST00000263708 NAP1L1P55209 391 aaKnown RBP14.04□□□□□ -0.16
PTPN4-201ENST00000263708 BECN2A8MW95 431 aa14.04□□□□□ -0.16
PTPN4-201ENST00000263708 TCERG1O14776 1098 aaKnown RBP14.04□□□□□ -0.16
PTPN4-201ENST00000263708 IPO7O95373 1038 aaKnown RBP14.04□□□□□ -0.16
PTPN4-201ENST00000263708 KTN1Q86UP2 1357 aaKnown RBP14.04□□□□□ -0.16
PTPN4-201ENST00000263708 SYNE3Q6ZMZ3 975 aa14.04□□□□□ -0.16
PTPN4-201ENST00000263708 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.03□□□□□ -0.16
PTPN4-201ENST00000263708 CCDC180Q9P1Z9 1646 aa14.03□□□□□ -0.16
PTPN4-201ENST00000263708 CHMP4AQ9BY43 222 aa14.03□□□□□ -0.16
PTPN4-201ENST00000263708 PMFBP1Q8TBY8 1022 aa14.03□□□□□ -0.16
PTPN4-201ENST00000263708 EIF4G1Q04637 1599 aaKnown RBP14.02□□□□□ -0.16
PTPN4-201ENST00000263708 RILPL2Q969X0 211 aa14.02□□□□□ -0.16
PTPN4-201ENST00000263708 PAF1Q8N7H5 531 aa14.02□□□□□ -0.17
PTPN4-201ENST00000263708 RUFY1Q96T51 708 aa14.02□□□□□ -0.17
PTPN4-201ENST00000263708 ZFYVE27Q5T4F4 411 aa14.01□□□□□ -0.17
PTPN4-201ENST00000263708 HSP90AA2PQ14568 343 aaPredicted RBP14.01□□□□□ -0.17
PTPN4-201ENST00000263708 VPS37DQ86XT2 251 aa14□□□□□ -0.17
PTPN4-201ENST00000263708 SIN3AQ96ST3 1273 aa14□□□□□ -0.17
PTPN4-201ENST00000263708 TRIM29Q14134 588 aa14□□□□□ -0.17
PTPN4-201ENST00000263708 ANKRD20A12PQ8NF67 263 aa14□□□□□ -0.17
PTPN4-201ENST00000263708 MAP7D2Q96T17 732 aa14□□□□□ -0.17
PTPN4-201ENST00000263708 GGT6Q6P531 493 aa14□□□□□ -0.17
PTPN4-201ENST00000263708 HSP90AB2PQ58FF8 381 aa13.99□□□□□ -0.17
PTPN4-201ENST00000263708 MEX3CQ5U5Q3 659 aaKnown RBP13.99□□□□□ -0.17
PTPN4-201ENST00000263708 CCDC47Q96A33 483 aaKnown RBP13.99□□□□□ -0.17
PTPN4-201ENST00000263708 TEX35Q5T0J7 233 aa13.99□□□□□ -0.17
PTPN4-201ENST00000263708 AMPHP49418 695 aa13.99□□□□□ -0.17
PTPN4-201ENST00000263708 EVA1CP58658 441 aa13.99□□□□□ -0.17
PTPN4-201ENST00000263708 AK7Q96M32 723 aa13.98□□□□□ -0.17
PTPN4-201ENST00000263708 APPP05067 770 aa13.98□□□□□ -0.17
PTPN4-201ENST00000263708 R3HCC1Q9Y3T6 440 aaKnown RBP13.98□□□□□ -0.17
PTPN4-201ENST00000263708 RCAN3Q9UKA8 241 aa13.98□□□□□ -0.17
PTPN4-201ENST00000263708 EPS15P42566 896 aa13.98□□□□□ -0.17
PTPN4-201ENST00000263708 HOMER1Q86YM7 354 aa13.97□□□□□ -0.17
PTPN4-201ENST00000263708 NGDNQ8NEJ9 315 aaKnown RBP13.97□□□□□ -0.17
PTPN4-201ENST00000263708 CCNB3Q8WWL7 1395 aa13.97□□□□□ -0.17
PTPN4-201ENST00000263708 NGEFQ8N5V2 710 aa13.96□□□□□ -0.17
PTPN4-201ENST00000263708 ROCK2O75116 1388 aaKnown RBP13.96□□□□□ -0.17
PTPN4-201ENST00000263708 CLUAP1Q96AJ1 413 aa13.95□□□□□ -0.18
PTPN4-201ENST00000263708 HOOK1Q9UJC3 728 aaKnown RBP13.95□□□□□ -0.18
PTPN4-201ENST00000263708 TMEM132AQ24JP5 1023 aa13.95□□□□□ -0.18
PTPN4-201ENST00000263708 PHF23Q9BUL5 403 aaPredicted RBP13.94□□□□□ -0.18
PTPN4-201ENST00000263708 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.94□□□□□ -0.182e-6■■■□□ 16
PTPN4-201ENST00000263708 CCDC146Q8IYE0 955 aa13.94□□□□□ -0.18
PTPN4-201ENST00000263708 CDR1P51861 262 aa13.94□□□□□ -0.18
PTPN4-201ENST00000263708 BCL11BQ9C0K0 894 aaPredicted RBP13.94□□□□□ -0.18
PTPN4-201ENST00000263708 RBM19Q9Y4C8 960 aaKnown RBP13.94□□□□□ -0.18
PTPN4-201ENST00000263708 DDX11L8A8MPP1 907 aa13.94□□□□□ -0.18
PTPN4-201ENST00000263708 NFXL1Q6ZNB6 911 aa13.93□□□□□ -0.18
PTPN4-201ENST00000263708 NUTM2FA1L443 756 aa13.93□□□□□ -0.18
PTPN4-201ENST00000263708 FOSBP53539 338 aa13.93□□□□□ -0.18
PTPN4-201ENST00000263708 SKIDA1Q1XH10 827 aa13.93□□□□□ -0.18
PTPN4-201ENST00000263708 VSIG10Q8N0Z9 540 aa13.93□□□□□ -0.18
PTPN4-201ENST00000263708 ATP6V1DQ9Y5K8 247 aa13.93□□□□□ -0.18
PTPN4-201ENST00000263708 SYTL4Q96C24 671 aaPredicted RBP13.92□□□□□ -0.18
PTPN4-201ENST00000263708 DCAF8L1A6NGE4 600 aa13.91□□□□□ -0.18
PTPN4-201ENST00000263708 LRRFIP1Q32MZ4 808 aaKnown RBP13.91□□□□□ -0.18
PTPN4-201ENST00000263708 C1orf141Q5JVX7 400 aa13.91□□□□□ -0.18
PTPN4-201ENST00000263708 PLCD4Q9BRC7 762 aa13.91□□□□□ -0.18
PTPN4-201ENST00000263708 GOLGA3Q08378 1498 aa13.91□□□□□ -0.18
PTPN4-201ENST00000263708 CHMP4CQ96CF2 233 aa13.91□□□□□ -0.18
PTPN4-201ENST00000263708 EIF3AQ14152 1382 aaKnown RBP13.91□□□□□ -0.18
PTPN4-201ENST00000263708 WWC2Q6AWC2 1192 aa13.9□□□□□ -0.18
PTPN4-201ENST00000263708 CPLX1O14810 134 aa13.9□□□□□ -0.18
PTPN4-201ENST00000263708 CCDC191Q8NCU4 936 aa13.9□□□□□ -0.18
PTPN4-201ENST00000263708 EID1Q9Y6B2 187 aa13.9□□□□□ -0.18
PTPN4-201ENST00000263708 DIAPH3Q9NSV4 1193 aa13.9□□□□□ -0.18
PTPN4-201ENST00000263708 NOM1Q5C9Z4 860 aaKnown RBP13.9□□□□□ -0.18
PTPN4-201ENST00000263708 CPLX2Q6PUV4 134 aaKnown RBP13.9□□□□□ -0.18
PTPN4-201ENST00000263708 RDXP35241 583 aaKnown RBP13.9□□□□□ -0.18
PTPN4-201ENST00000263708 ERICH2A1L162 156 aa13.89□□□□□ -0.19
PTPN4-201ENST00000263708 NUTM2DQ5VT03 806 aaPredicted RBP13.89□□□□□ -0.19
PTPN4-201ENST00000263708 ANO2Q9NQ90 1003 aa13.89□□□□□ -0.19
PTPN4-201ENST00000263708 DDX49Q9Y6V7 483 aaKnown RBP13.89□□□□□ -0.19
PTPN4-201ENST00000263708 LMOD3Q0VAK6 560 aa13.89□□□□□ -0.19
PTPN4-201ENST00000263708 CAGE1Q8TC20 777 aa13.88□□□□□ -0.19
PTPN4-201ENST00000263708 FYB1O15117 783 aa13.88□□□□□ -0.19
PTPN4-201ENST00000263708 CCDC173Q0VFZ6 552 aa13.88□□□□□ -0.19
PTPN4-201ENST00000263708 TERF2IPQ9NYB0 399 aa13.87□□□□□ -0.19
PTPN4-201ENST00000263708 CCAR1Q8IX12 1150 aaKnown RBP13.87□□□□□ -0.19
PTPN4-201ENST00000263708 BICD2Q8TD16 824 aa13.87□□□□□ -0.19
PTPN4-201ENST00000263708 DCTN1Q14203 1278 aa13.87□□□□□ -0.19
PTPN4-201ENST00000263708 TRDNQ13061 729 aa13.87□□□□□ -0.19
PTPN4-201ENST00000263708 ANKRD45Q5TZF3 282 aa13.87□□□□□ -0.19
PTPN4-201ENST00000263708 CENPJQ9HC77 1338 aaPredicted RBP13.86□□□□□ -0.19
PTPN4-201ENST00000263708 CEP162Q5TB80 1403 aa13.86□□□□□ -0.19
PTPN4-201ENST00000263708 OFD1O75665 1012 aa13.86□□□□□ -0.19
PTPN4-201ENST00000263708 TTLL5Q6EMB2 1281 aa13.86□□□□□ -0.19
PTPN4-201ENST00000263708 TTC5Q8N0Z6 440 aa13.86□□□□□ -0.19
PTPN4-201ENST00000263708 IKQ13123 557 aaPredicted RBP13.86□□□□□ -0.19
PTPN4-201ENST00000263708 C9orf78Q9NZ63 289 aaPredicted RBP13.86□□□□□ -0.19
PTPN4-201ENST00000263708 MTMR7Q9Y216 660 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms