RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 EXOC6Q8TAG9 804 aa12.27□□□□□ -0.45
MSH4-201ENST00000263187 CDCA7LQ96GN5 454 aa12.27□□□□□ -0.45
MSH4-201ENST00000263187 ROCK2O75116 1388 aaKnown RBP12.26□□□□□ -0.45
MSH4-201ENST00000263187 PTPRGP23470 1445 aa12.26□□□□□ -0.45
MSH4-201ENST00000263187 NOP58Q9Y2X3 529 aaKnown RBP12.25□□□□□ -0.45
MSH4-201ENST00000263187 SMG6Q86US8 1419 aaKnown RBP12.25□□□□□ -0.45
MSH4-201ENST00000263187 ZCCHC11Q5TAX3 1644 aaKnown RBP12.25□□□□□ -0.45
MSH4-201ENST00000263187 KIF15Q9NS87 1388 aa12.23□□□□□ -0.45
MSH4-201ENST00000263187 C9orf84Q5VXU9 1444 aa12.23□□□□□ -0.45
MSH4-201ENST00000263187 DEKP35659 375 aaKnown RBP12.22□□□□□ -0.45
MSH4-201ENST00000263187 MYBBP1AQ9BQG0 1328 aaKnown RBP12.21□□□□□ -0.45
MSH4-201ENST00000263187 ANP32AP39687 249 aaKnown RBP12.21□□□□□ -0.45
MSH4-201ENST00000263187 RCAN3Q9UKA8 241 aa12.21□□□□□ -0.46
MSH4-201ENST00000263187 MBD5Q9P267 1494 aa12.2□□□□□ -0.46
MSH4-201ENST00000263187 RRP1P56182 461 aaKnown RBP12.19□□□□□ -0.46
MSH4-201ENST00000263187 PANK3Q9H999 370 aa12.19□□□□□ -0.46
MSH4-201ENST00000263187 ZBTB47Q9UFB7 747 aaPredicted RBP12.18□□□□□ -0.46
MSH4-201ENST00000263187 ATP10BO94823 1461 aa12.18□□□□□ -0.46
MSH4-201ENST00000263187 LAS1LQ9Y4W2 734 aaKnown RBP12.17□□□□□ -0.46
MSH4-201ENST00000263187 KDM5CP41229 1560 aa12.17□□□□□ -0.46
MSH4-201ENST00000263187 RALBP1Q15311 655 aa12.17□□□□□ -0.46
MSH4-201ENST00000263187 KTN1Q86UP2 1357 aaKnown RBP12.15□□□□□ -0.46
MSH4-201ENST00000263187 NLRP13Q86W25 1043 aa12.15□□□□□ -0.46
MSH4-201ENST00000263187 IPO9Q96P70 1041 aaKnown RBP12.15□□□□□ -0.46
MSH4-201ENST00000263187 RNF123Q5XPI4 1314 aa12.15□□□□□ -0.46
MSH4-201ENST00000263187 CYB5RLQ6IPT4 315 aa12.15□□□□□ -0.46
MSH4-201ENST00000263187 CCDC144AA2RUR9 1427 aa12.14□□□□□ -0.47
MSH4-201ENST00000263187 RALGAPBQ86X10 1494 aa12.14□□□□□ -0.47
MSH4-201ENST00000263187 DISP3Q9P2K9 1392 aa12.14□□□□□ -0.47
MSH4-201ENST00000263187 KIF13AQ9H1H9 1805 aa12.14□□□□□ -0.47
MSH4-201ENST00000263187 C20orf194Q5TEA3 1177 aa12.13□□□□□ -0.47
MSH4-201ENST00000263187 ADGRL2O95490 1459 aa12.13□□□□□ -0.47
MSH4-201ENST00000263187 MYT1LQ9UL68 1186 aa12.13□□□□□ -0.47
MSH4-201ENST00000263187 BRD4O60885 1362 aaPredicted RBP12.13□□□□□ -0.47
MSH4-201ENST00000263187 ARID4BQ4LE39 1312 aaPredicted RBP12.13□□□□□ -0.47
MSH4-201ENST00000263187 PER1O15534 1290 aaPredicted RBP12.12□□□□□ -0.47
MSH4-201ENST00000263187 CRBNQ96SW2 442 aa12.12□□□□□ -0.47
MSH4-201ENST00000263187 SENP3Q9H4L4 574 aaPredicted RBP12.11□□□□□ -0.47
MSH4-201ENST00000263187 ITSN2Q9NZM3 1697 aa12.11□□□□□ -0.47
MSH4-201ENST00000263187 ADAMTS8Q9UP79 889 aa12.11□□□□□ -0.47
MSH4-201ENST00000263187 UHRF1BP1Q6BDS2 1440 aa12.11□□□□□ -0.47
MSH4-201ENST00000263187 LRPPRCP42704 1394 aaKnown RBP12.11□□□□□ -0.47
MSH4-201ENST00000263187 PDE4AP27815 886 aa12.11□□□□□ -0.47
MSH4-201ENST00000263187 ADGBQ8N7X0 1667 aa12.11□□□□□ -0.47
MSH4-201ENST00000263187 DIP2BQ9P265 1576 aa12.11□□□□□ -0.47
MSH4-201ENST00000263187 RTL5Q5HYW3 569 aaPredicted RBP12.1□□□□□ -0.47
MSH4-201ENST00000263187 CCDC146Q8IYE0 955 aa12.1□□□□□ -0.47
MSH4-201ENST00000263187 GLI2P10070 1586 aa12.1□□□□□ -0.47
MSH4-201ENST00000263187 SLC4A3P48751 1232 aa12.1□□□□□ -0.47
MSH4-201ENST00000263187 ABCC10Q5T3U5 1492 aa12.09□□□□□ -0.47
MSH4-201ENST00000263187 TESK2Q96S53 571 aa12.09□□□□□ -0.47
MSH4-201ENST00000263187 WDR7Q9Y4E6 1490 aa12.09□□□□□ -0.47
MSH4-201ENST00000263187 POLR1AO95602 1720 aaPredicted RBP12.09□□□□□ -0.47
MSH4-201ENST00000263187 CDC42BPAQ5VT25 1732 aa12.09□□□□□ -0.47
MSH4-201ENST00000263187 MAP3K4Q9Y6R4 1608 aa12.08□□□□□ -0.47
MSH4-201ENST00000263187 ASXL2Q76L83 1435 aa12.08□□□□□ -0.48
MSH4-201ENST00000263187 TMF1P82094 1093 aa12.08□□□□□ -0.48
MSH4-201ENST00000263187 ABCA9Q8IUA7 1624 aa12.07□□□□□ -0.48
MSH4-201ENST00000263187 PRAG1Q86YV5 1406 aa12.07□□□□□ -0.48
MSH4-201ENST00000263187 FAM135AQ9P2D6 1515 aa12.07□□□□□ -0.48
MSH4-201ENST00000263187 PLEKHH2Q8IVE3 1493 aa12.07□□□□□ -0.48
MSH4-201ENST00000263187 PARD3Q8TEW0 1356 aa12.06□□□□□ -0.48
MSH4-201ENST00000263187 KNSTRNQ9Y448 316 aa12.06□□□□□ -0.48
MSH4-201ENST00000263187 CROCC2H7BZ55 1655 aa12.06□□□□□ -0.48
MSH4-201ENST00000263187 PPRC1Q5VV67 1664 aaKnown RBP12.06□□□□□ -0.48
MSH4-201ENST00000263187 WDR43Q15061 677 aaKnown RBP eCLIP12.05□□□□□ -0.48
MSH4-201ENST00000263187 PLA2R1Q13018 1463 aa12.05□□□□□ -0.48
MSH4-201ENST00000263187 AFAP1Q8N556 730 aa12.05□□□□□ -0.48
MSH4-201ENST00000263187 ARHGAP5Q13017 1502 aa12.04□□□□□ -0.48
MSH4-201ENST00000263187 A2MP01023 1474 aa12.04□□□□□ -0.48
MSH4-201ENST00000263187 CCDC141Q6ZP82 1450 aa12.04□□□□□ -0.48
MSH4-201ENST00000263187 SYCP2Q9BX26 1530 aa12.04□□□□□ -0.48
MSH4-201ENST00000263187 TTC37Q6PGP7 1564 aa12.04□□□□□ -0.48
MSH4-201ENST00000263187 TNNT2P45379 298 aaPredicted RBP12.04□□□□□ -0.48
MSH4-201ENST00000263187 RGS3P49796 1198 aa12.04□□□□□ -0.48
MSH4-201ENST00000263187 RTN4Q9NQC3 1192 aaKnown RBP12.04□□□□□ -0.48
MSH4-201ENST00000263187 NEFMP07197 916 aa12.03□□□□□ -0.48
MSH4-201ENST00000263187 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.03□□□□□ -0.48
MSH4-201ENST00000263187 TCERG1O14776 1098 aaKnown RBP12.03□□□□□ -0.48
MSH4-201ENST00000263187 ERBINQ96RT1 1412 aa12.03□□□□□ -0.48
MSH4-201ENST00000263187 BACH2Q9BYV9 841 aa12.03□□□□□ -0.48
MSH4-201ENST00000263187 ARHGEF12Q9NZN5 1544 aa12.02□□□□□ -0.48
MSH4-201ENST00000263187 KDM5DQ9BY66 1539 aa12.02□□□□□ -0.49
MSH4-201ENST00000263187 PPP2R1AP30153 589 aa12.01□□□□□ -0.49
MSH4-201ENST00000263187 NEUROD2Q15784 382 aa12.01□□□□□ -0.49
MSH4-201ENST00000263187 SAMD9LQ8IVG5 1584 aa12.01□□□□□ -0.49
MSH4-201ENST00000263187 PDE3BQ13370 1112 aa12.01□□□□□ -0.49
MSH4-201ENST00000263187 MYO5CQ9NQX4 1742 aa12.01□□□□□ -0.49
MSH4-201ENST00000263187 SHANK2Q9UPX8 1470 aa12.01□□□□□ -0.49
MSH4-201ENST00000263187 CDC42BPBQ9Y5S2 1711 aa12□□□□□ -0.49
MSH4-201ENST00000263187 PREX2Q70Z35 1606 aa12□□□□□ -0.49
MSH4-201ENST00000263187 CHGAP10645 457 aaKnown RBP12□□□□□ -0.49
MSH4-201ENST00000263187 PLEKHH1Q9ULM0 1364 aa11.99□□□□□ -0.49
MSH4-201ENST00000263187 ARAP3Q8WWN8 1544 aa11.99□□□□□ -0.49
MSH4-201ENST00000263187 SPINK5Q9NQ38 1064 aaPredicted RBP11.99□□□□□ -0.49
MSH4-201ENST00000263187 APAF1O14727 1248 aa11.99□□□□□ -0.49
MSH4-201ENST00000263187 RSPH4AQ5TD94 716 aa11.98□□□□□ -0.49
MSH4-201ENST00000263187 BCAR3O75815 825 aa11.98□□□□□ -0.49
MSH4-201ENST00000263187 NPM1P06748 294 aaKnown RBP eCLIP11.97□□□□□ -0.49
MSH4-201ENST00000263187 CFAP70Q5T0N1 1121 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms