RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 RWDD1Q9H446 243 aaPredicted RBP23.29■■□□□ 1.32
CLIP2-201ENST00000223398 EVC2Q86UK5 1308 aa23.29■■□□□ 1.32
CLIP2-201ENST00000223398 CHMP4AQ9BY43 222 aa23.29■■□□□ 1.32
CLIP2-201ENST00000223398 NLRP13Q86W25 1043 aa23.28■■□□□ 1.32
CLIP2-201ENST00000223398 UACAQ9BZF9 1416 aa23.28■■□□□ 1.32
CLIP2-201ENST00000223398 MEX3CQ5U5Q3 659 aaKnown RBP23.28■■□□□ 1.32
CLIP2-201ENST00000223398 LMOD3Q0VAK6 560 aa23.27■■□□□ 1.32
CLIP2-201ENST00000223398 PSME1Q06323 249 aa23.27■■□□□ 1.32
CLIP2-201ENST00000223398 C1orf141Q5JVX7 400 aa23.27■■□□□ 1.32
CLIP2-201ENST00000223398 TRIM6-TRIM34B2RNG4 842 aa23.26■■□□□ 1.31
CLIP2-201ENST00000223398 FRAT2O75474 233 aaPredicted RBP23.26■■□□□ 1.31
CLIP2-201ENST00000223398 NGEFQ8N5V2 710 aa23.26■■□□□ 1.31
CLIP2-201ENST00000223398 NCBP3Q53F19 620 aaKnown RBP23.25■■□□□ 1.31
CLIP2-201ENST00000223398 SYTL4Q96C24 671 aaPredicted RBP23.24■■□□□ 1.31
CLIP2-201ENST00000223398 CGNL1Q0VF96 1302 aa23.22■■□□□ 1.31
CLIP2-201ENST00000223398 CENPJQ9HC77 1338 aaPredicted RBP23.22■■□□□ 1.31
CLIP2-201ENST00000223398 NOP58Q9Y2X3 529 aaKnown RBP23.21■■□□□ 1.31
CLIP2-201ENST00000223398 PRDM2Q13029 1718 aa23.2■■□□□ 1.31
CLIP2-201ENST00000223398 BCL2L13Q9BXK5 485 aa23.2■■□□□ 1.3
CLIP2-201ENST00000223398 HMMRO75330 724 aa23.19■■□□□ 1.3
CLIP2-201ENST00000223398 TEFQ10587 303 aa23.19■■□□□ 1.3
CLIP2-201ENST00000223398 GPATCH3Q96I76 525 aa23.19■■□□□ 1.3
CLIP2-201ENST00000223398 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.18■■□□□ 1.3
CLIP2-201ENST00000223398 AMER1Q5JTC6 1135 aaPredicted RBP23.18■■□□□ 1.3
CLIP2-201ENST00000223398 HDAC5Q9UQL6 1122 aa23.17■■□□□ 1.3
CLIP2-201ENST00000223398 AFAP1Q8N556 730 aa23.17■■□□□ 1.3
CLIP2-201ENST00000223398 CFAP44Q96MT7 982 aa23.17■■□□□ 1.3
CLIP2-201ENST00000223398 NUTM2GQ5VZR2 741 aa23.17■■□□□ 1.3
CLIP2-201ENST00000223398 EIF2S2P20042 333 aaKnown RBP23.16■■□□□ 1.3
CLIP2-201ENST00000223398 ATF3P18847 181 aa23.16■■□□□ 1.3
CLIP2-201ENST00000223398 KIF15Q9NS87 1388 aa23.16■■□□□ 1.3
CLIP2-201ENST00000223398 TOMM22Q9NS69 142 aa23.15■■□□□ 1.3
CLIP2-201ENST00000223398 GOLGA6L6A8MZA4 724 aa23.15■■□□□ 1.3
CLIP2-201ENST00000223398 NECTIN2Q92692 538 aa23.15■■□□□ 1.3
CLIP2-201ENST00000223398 TTC5Q8N0Z6 440 aa23.15■■□□□ 1.3
CLIP2-201ENST00000223398 MFAP1P55081 439 aaKnown RBP23.14■■□□□ 1.3
CLIP2-201ENST00000223398 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.14■■□□□ 1.29
CLIP2-201ENST00000223398 PMFBP1Q8TBY8 1022 aa23.14■■□□□ 1.29
CLIP2-201ENST00000223398 NOL8Q76FK4 1167 aaKnown RBP23.13■■□□□ 1.29
CLIP2-201ENST00000223398 USP47Q96K76 1375 aa23.13■■□□□ 1.29
CLIP2-201ENST00000223398 MYBBP1AQ9BQG0 1328 aaKnown RBP23.13■■□□□ 1.29
CLIP2-201ENST00000223398 HSP90B1P14625 803 aaKnown RBP23.13■■□□□ 1.29
CLIP2-201ENST00000223398 MYOM3Q5VTT5 1437 aa23.11■■□□□ 1.29
CLIP2-201ENST00000223398 NESP48681 1621 aa23.11■■□□□ 1.29
CLIP2-201ENST00000223398 TMEM132EQ6IEE7 984 aa23.11■■□□□ 1.29
CLIP2-201ENST00000223398 DHX57Q6P158 1386 aaKnown RBP23.1■■□□□ 1.29
CLIP2-201ENST00000223398 NCAPD3P42695 1498 aa23.09■■□□□ 1.29
CLIP2-201ENST00000223398 TCERG1O14776 1098 aaKnown RBP23.08■■□□□ 1.29
CLIP2-201ENST00000223398 PRG4Q92954 1404 aaPredicted RBP23.07■■□□□ 1.28
CLIP2-201ENST00000223398 SLKQ9H2G2 1235 aaPredicted RBP23.06■■□□□ 1.28
CLIP2-201ENST00000223398 DIAPH1O60610 1272 aaKnown RBP23.06■■□□□ 1.28
CLIP2-201ENST00000223398 PHLDB1Q86UU1 1377 aa23.05■■□□□ 1.28
CLIP2-201ENST00000223398 NRDCO43847 1150 aa23.05■■□□□ 1.28
CLIP2-201ENST00000223398 DRC7Q8IY82 874 aa23.05■■□□□ 1.28
CLIP2-201ENST00000223398 KLHL34Q8N239 644 aa23.05■■□□□ 1.28
CLIP2-201ENST00000223398 GRIN2BQ13224 1484 aa23.04■■□□□ 1.28
CLIP2-201ENST00000223398 CABP2Q9NPB3 220 aa23.04■■□□□ 1.28
CLIP2-201ENST00000223398 PHF23Q9BUL5 403 aaPredicted RBP23.04■■□□□ 1.28
CLIP2-201ENST00000223398 ARHGAP5Q13017 1502 aa23.03■■□□□ 1.28
CLIP2-201ENST00000223398 APAF1O14727 1248 aa23.02■■□□□ 1.28
CLIP2-201ENST00000223398 PLIN1O60240 522 aa23.02■■□□□ 1.28
CLIP2-201ENST00000223398 GLIPR1L2Q4G1C9 344 aa23.02■■□□□ 1.28
CLIP2-201ENST00000223398 FOXD4L1Q9NU39 408 aa23.02■■□□□ 1.28
CLIP2-201ENST00000223398 NLRP2Q9NX02 1062 aa23.02■■□□□ 1.28
CLIP2-201ENST00000223398 USP35Q9P2H5 1018 aa23.01■■□□□ 1.27
CLIP2-201ENST00000223398 GGNBP2Q9H3C7 697 aa23■■□□□ 1.27
CLIP2-201ENST00000223398 HMOX1P09601 288 aa23■■□□□ 1.27
CLIP2-201ENST00000223398 TXNDC2Q86VQ3 553 aa23■■□□□ 1.27
CLIP2-201ENST00000223398 FGD6Q6ZV73 1430 aa23■■□□□ 1.27
CLIP2-201ENST00000223398 PDE3BQ13370 1112 aa23■■□□□ 1.27
CLIP2-201ENST00000223398 NEXNQ0ZGT2 675 aa22.99■■□□□ 1.27
CLIP2-201ENST00000223398 RILPL2Q969X0 211 aa22.99■■□□□ 1.27
CLIP2-201ENST00000223398 RIPK4P57078 832 aa22.98■■□□□ 1.27
CLIP2-201ENST00000223398 C9orf78Q9NZ63 289 aaPredicted RBP22.98■■□□□ 1.27
CLIP2-201ENST00000223398 RAPGEF4Q8WZA2 1011 aa22.98■■□□□ 1.27
CLIP2-201ENST00000223398 RTN4Q9NQC3 1192 aaKnown RBP22.98■■□□□ 1.27
CLIP2-201ENST00000223398 NLRP6P59044 892 aa22.97■■□□□ 1.27
CLIP2-201ENST00000223398 ANKRD50Q9ULJ7 1429 aa22.96■■□□□ 1.27
CLIP2-201ENST00000223398 ESCO1Q5FWF5 840 aa22.96■■□□□ 1.27
CLIP2-201ENST00000223398 VPS53Q5VIR6 699 aa22.96■■□□□ 1.27
CLIP2-201ENST00000223398 PROSER2Q86WR7 435 aaPredicted RBP22.96■■□□□ 1.27
CLIP2-201ENST00000223398 PRKRIP1Q9H875 184 aaPredicted RBP22.96■■□□□ 1.27
CLIP2-201ENST00000223398 RASSF8Q8NHQ8 419 aa22.95■■□□□ 1.27
CLIP2-201ENST00000223398 ANKRD45Q5TZF3 282 aa22.95■■□□□ 1.26
CLIP2-201ENST00000223398 GZF1Q9H116 711 aaPredicted RBP22.94■■□□□ 1.26
CLIP2-201ENST00000223398 FBXW7Q969H0 707 aa22.94■■□□□ 1.26
CLIP2-201ENST00000223398 MRC2Q9UBG0 1479 aa22.94■■□□□ 1.26
CLIP2-201ENST00000223398 ZKSCAN2Q63HK3 967 aa22.93■■□□□ 1.26
CLIP2-201ENST00000223398 E9PSI1 815 aa22.93■■□□□ 1.26
CLIP2-201ENST00000223398 RAD21O60216 631 aa22.92■■□□□ 1.26
CLIP2-201ENST00000223398 SYNJ2O15056 1496 aa22.92■■□□□ 1.26
CLIP2-201ENST00000223398 NAP1L5Q96NT1 182 aaPredicted RBP22.92■■□□□ 1.26
CLIP2-201ENST00000223398 COG6Q9Y2V7 657 aa22.92■■□□□ 1.26
CLIP2-201ENST00000223398 CFAP70Q5T0N1 1121 aa22.91■■□□□ 1.26
CLIP2-201ENST00000223398 RAPGEF3O95398 923 aa22.91■■□□□ 1.26
CLIP2-201ENST00000223398 RBM19Q9Y4C8 960 aaKnown RBP22.9■■□□□ 1.26
CLIP2-201ENST00000223398 FOXD4L5Q5VV16 416 aaPredicted RBP22.9■■□□□ 1.26
CLIP2-201ENST00000223398 ERICH6BQ5W0A0 696 aa22.9■■□□□ 1.26
CLIP2-201ENST00000223398 FOXD4L4Q8WXT5 416 aaPredicted RBP22.9■■□□□ 1.26
CLIP2-201ENST00000223398 GBP4Q96PP9 640 aa22.9■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms